Rw1G036720

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001452
Physical Location & Seq
Reverse (-)
64566209 .. 64567138
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036720.1

Sequence Viewer

Length: 891 bp
ATGGAAGAGTACGACTCCAGACGAGGGGATGACCTGCCTAGTGACGTACTGCGCAATTTATTTGAGTTTTTCGACGACACATCGGATCCAACTTCGGCCATTACCAGGGTTCATTGCAGTGCCGTTTGTAGTGCTTGGCGTTCGATTCTCTGTGACCCTCAGCTTTGGAACACAATTGACCTCTCCACCATGGAATCTGATTTCATCAGAATACAAATTGAGCCCTATGTTTGGGTTAGTGAAAAGACAGATTCGAGATTGAATTGCATTTTGAAGACTGCATTGAGTCTCAGCAGGAGAAATATAACCACCCTTCTCTTCAATCTCAACCTATCCCCGAAGCTGAAACGACTGGTTATGCCGGTATGGAACAGGATAAGCATTGCCGGAATCCGCAAGGCCATTGCTTCATGGAAAGACCTTGAGTCCCTTACAATAGGTAACATCAATAGTTACAACTACGACTTCCTCATGAGGCAGATTTCAACCAATTGCAAGAACTTCAGTGAGTTGAAGTTGGTCGGAACTTGGGGTTCCTTTGCTTCAGCACTAGTTAGATATGTTCCGAAACTGAAAGTTTTGAGCCTCCGGTGTTCGAATCTCTTGAAGGAGGATTTGATCGCCATATTAAATGGATTACAAGACTTGGAAGTTCTGAATATATCACATTGCGTTTTGCTAAATACTCGACCTAGAACGAGGATTACTCTTACAGAGCTTGATCCATTTATTCTTGGCAAGGCTTTTAGGTTAAGGAGATTCATAACGTGCATGAAATCTGAGTCGTGCGTCATGTGCCAAAGGGCCAGAGAAGACGAGGGGATCATGAGGTGGTATAGGTATGAAGAAGGGTTATGGAAAGTAGATGAGGTCGACTCTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

296

Amino Acids

34.22

Weight (kDa)

8.3

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 10 - 61 2.9e-09 F-box-like
F-box PF00646 11 - 57 1.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 873
AciI CCGC 1 cut(s) 394
AclWI GGATC 4 cut(s) 80, 93, 716, 830
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 487, 528
AfaI GTAC 2 cut(s) 11, 48
AfiI CCNNNNNNNGG 3 cut(s) 24, 105, 231
AgsI TTSAA 6 cut(s) 262, 274, 322, 486, 514, 607
AhdI GACNNNNNGTC 1 cut(s) 424
AhlI ACTAGT 1 cut(s) 550
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 3 cut(s) 163, 343, 718
AluI AGCT 3 cut(s) 163, 343, 718
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 4 cut(s) 80, 93, 716, 830
AoxI GGCC 3 cut(s) 96, 399, 804
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 804
AsuII TTCGAA 1 cut(s) 596
BamHI GGATCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 281, 819
BbvCI CCTCAGC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 107
BcgI CGANNNNNNTGC 1 cut(s) 863
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 3 cut(s) 39, 551, 693
BfuAI ACCTGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 106
BmeRI GACNNNNNGTC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 804
BmiI GGNNCC 2 cut(s) 87, 535
BmrFI CCNGG 1 cut(s) 106
BpiI GAAGAC 2 cut(s) 281, 819
BplI GAGNNNNNCTC 4 cut(s) 31, 691, 723, 860
Bpu10I CCTNAGC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 105, 189
BsaWI WCCGGW 1 cut(s) 588
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 105, 231
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 4 cut(s) 112, 381, 402, 667
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 105, 189
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 3 cut(s) 24, 105, 231
BseMI GCAATG 4 cut(s) 112, 381, 402, 667
BseMII CTCAG 3 cut(s) 173, 304, 771
BseNI ACTGG 1 cut(s) 357
BshFI GGCC 3 cut(s) 98, 401, 806
BsiSI CCGG 3 cut(s) 362, 387, 589
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 3 cut(s) 24, 105, 231
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 3 cut(s) 98, 401, 806
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 4 cut(s) 85, 618, 721, 822
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 1 cut(s) 394
BspANI GGCC 3 cut(s) 98, 401, 806
BspCNI CTCAG 3 cut(s) 172, 303, 772
BspHI TCATGA 2 cut(s) 471, 825
BspLI GGNNCC 2 cut(s) 87, 535
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 4 cut(s) 80, 93, 716, 830
BspT104I TTCGAA 1 cut(s) 596
BsrDI GCAATG 4 cut(s) 112, 381, 402, 667
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 105, 189
BssMI GATC 4 cut(s) 85, 618, 721, 822
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 323
BstBI TTCGAA 1 cut(s) 596
BstDEI CTNAG 3 cut(s) 159, 290, 780
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 4 cut(s) 88, 621, 724, 825
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 4 cut(s) 85, 618, 721, 822
BstMWI GCNNNNNNNGC 1 cut(s) 795
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstV2I GAAGAC 2 cut(s) 281, 819
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 3 cut(s) 98, 401, 806
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 124, 511
BveI ACCTGC 1 cut(s) 42
CciI TCATGA 2 cut(s) 471, 825
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 804
CseI GACGC 1 cut(s) 778
Csp6I GTAC 2 cut(s) 10, 47
CviAII CATG 6 cut(s) 190, 411, 472, 772, 793, 826
CviJI RGCY 9 cut(s) 98, 163, 223, 343, 401, 585, 718, 743, 806
CviKI_1 RGCY 9 cut(s) 98, 163, 223, 343, 401, 585, 718, 743, 806
CviQI GTAC 2 cut(s) 10, 47
DdeI CTNAG 3 cut(s) 159, 290, 780
DpnI GATC 4 cut(s) 87, 620, 723, 824
DpnII GATC 4 cut(s) 85, 618, 721, 822
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 323
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 487, 528
EcoRII CCWGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 6 cut(s) 193, 414, 475, 775, 796, 829
FaqI GGGAC 1 cut(s) 412
FatI CATG 6 cut(s) 189, 410, 471, 771, 792, 825
FblI GTMKAC 1 cut(s) 873
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 3 cut(s) 39, 551, 693
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 1 cut(s) 53
HaeIII GGCC 3 cut(s) 98, 401, 806
HapII CCGG 3 cut(s) 362, 387, 589
HgaI GACGC 1 cut(s) 778
HhaI GCGC 1 cut(s) 54
Hin1II CATG 6 cut(s) 193, 414, 475, 775, 796, 829
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HpaII CCGG 3 cut(s) 362, 387, 589
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 7 cut(s) 85, 199, 209, 524, 567, 657, 781
Hpy188III TCNNGA 5 cut(s) 18, 255, 472, 604, 826
Hpy8I GTNNAC 1 cut(s) 874
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 323, 601, 842
HpyCH4IV ACGT 2 cut(s) 45, 767
HpyCH4V TGCA 5 cut(s) 117, 267, 281, 495, 771
HpyF10VI GCNNNNNNNGC 1 cut(s) 795
HpyF3I CTNAG 3 cut(s) 159, 290, 780
HpySE526I ACGT 2 cut(s) 45, 767
Hsp92II CATG 6 cut(s) 193, 414, 475, 775, 796, 829
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 4 cut(s) 85, 618, 721, 822
MaeI CTAG 3 cut(s) 39, 551, 693
MaeII ACGT 2 cut(s) 45, 767
MaeIII GTNAC 4 cut(s) 41, 152, 440, 452
MalI GATC 4 cut(s) 87, 620, 723, 824
MboI GATC 4 cut(s) 85, 618, 721, 822
MboII GAAGA 5 cut(s) 17, 286, 310, 824, 857
MfeI CAATTG 2 cut(s) 174, 490
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 5 cut(s) 55, 174, 216, 262, 490
MlyI GAGTC 5 cut(s) 8, 295, 434, 791, 869
MmeI TCCRAC 2 cut(s) 113, 502
MseI TTAA 2 cut(s) 629, 752
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 3 cut(s) 362, 387, 589
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 2 cut(s) 174, 490
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 795
NcoI CCATGG 1 cut(s) 189
NdeII GATC 4 cut(s) 85, 618, 721, 822
NlaIII CATG 6 cut(s) 193, 414, 475, 775, 796, 829
NlaIV GGNNCC 2 cut(s) 87, 535
NmuCI GTSAC 2 cut(s) 41, 152
NsbI TGCGCA 1 cut(s) 53
NspV TTCGAA 1 cut(s) 596
PagI TCATGA 2 cut(s) 471, 825
PfeI GAWTC 6 cut(s) 145, 194, 251, 390, 598, 759
PleI GAGTC 5 cut(s) 8, 294, 433, 790, 869
PpsI GAGTC 5 cut(s) 8, 294, 433, 790, 869
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 87, 535
PspPI GGNCC 1 cut(s) 804
PsrI GAACNNNNNNTAC 2 cut(s) 688, 720
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 11, 48
RsaNI GTAC 2 cut(s) 10, 47
RseI CAYNNNNRTG 1 cut(s) 117
SalI GTCGAC 1 cut(s) 872
SaqAI TTAA 2 cut(s) 629, 752
Sau3AI GATC 4 cut(s) 85, 618, 721, 822
Sau96I GGNCC 1 cut(s) 804
SchI GAGTC 5 cut(s) 8, 295, 434, 791, 869
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 5 cut(s) 55, 174, 216, 262, 490
SsiI CCGC 1 cut(s) 394
SspMI CTAG 3 cut(s) 39, 551, 693
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 2 cut(s) 48, 770
TaqI TCGA 6 cut(s) 72, 143, 254, 596, 688, 873
TasI AATT 5 cut(s) 55, 174, 216, 262, 490
TfiI GAWTC 6 cut(s) 145, 194, 251, 390, 598, 759
Tru1I TTAA 2 cut(s) 629, 752
Tru9I TTAA 2 cut(s) 629, 752
TscAI CASTG 2 cut(s) 124, 511
TseFI GTSAC 2 cut(s) 41, 152
Tsp45I GTSAC 2 cut(s) 41, 152
TspDTI ATGAA 6 cut(s) 101, 193, 399, 751, 788, 858
TspRI CASTG 2 cut(s) 124, 511
XmiI GTMKAC 1 cut(s) 873
XspI CTAG 3 cut(s) 39, 551, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.