RLG00000026546

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001452
Physical Location & Seq
Forward (+)
3735307 .. 3736275
969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026546

Sequence Viewer

Length: 969 bp
ATGGAAGAAGGCTCCAACAAAAGAATAAGAATTGGTACAATGGCAGAGTACGACTCCAGACGAGGGGATGACCTGCCTAGTGACGTAGTGCGCAATTTATTTGCGTTTTTCGACCACACATCGGATCCAACTTCGGCCATTGCAAGGGTTCATTGCAGTGCCGTTTGTTGTGCTTGGCGTTCGATTCTCTGTGACCCTCAGCTTTGGAACACAATTGACCTCTCCACCATGGAATCTGATTTCATCAGAATACTAATTGAGCCCTATGTTTGGGTTAGTGAAAAGACAGATTCGAGATTGAATTGCATTTTGAAGACTGCATTGAGTCTCAGCAGGAGAAATATAACTACCATTCTCTTCAATCTCAACTTGTATGTTCCTGACCATCTCTTCACTTACACTGCTGAAAGATCCCCGAAGCTGAAACGACTGGTTATGCCGGTATGGAACAGGATAAGCACTGCCGGAATCCGCAAGGCCATTGCTTCATGGAAAGACCTTGAGTCCCTTACAATAGGTAACATCAATAGTTACAACTACGACTTCCTCATGAGGCAGATTTCAACCAATTGCAAGAACTTCAGTGAGTTGAAGTTGATCGGAACTTGCGATTTCTTTGCTTCAGCACTAGTTAGATATGTTCCGAAACTGAAAGTTTTGAGCCTCCGGTGCTCGAATCTCTTGAAGGAGGATTTGATCGCCATATTAAATGGATTACAAGACTTGGAAGTTCTGAATATATCACATTGCGTTTTGCTAAATACTCGACCTAGAACGAGGATTATTCTTACAGAGCTTGATCCATTTATTCTTGGCAAGGCTTTTAGGTTAAGGAGATTCATAACGTGCATGAAATCTGAGTCGTGCGTCATGTGCAAAAGGGCCAGAGAAGACGAGGGGATCATGAGGTGGTATAGGTATGAAGAAGGGTTATGGAAAGTAGATGAGGTCGACTCTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

323

Amino Acids

37.2

Weight (kDa)

8.68

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 23 - 74 1.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 951
AciI CCGC 1 cut(s) 472
AclWI GGATC 5 cut(s) 119, 132, 405, 794, 908
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 565, 606
AfaI GTAC 2 cut(s) 37, 50
AfiI CCNNNNNNNGG 4 cut(s) 63, 121, 144, 270
AgsI TTSAA 6 cut(s) 301, 313, 361, 564, 592, 685
AhdI GACNNNNNGTC 1 cut(s) 502
AhlI ACTAGT 1 cut(s) 628
AluBI AGCT 3 cut(s) 202, 421, 796
AluI AGCT 3 cut(s) 202, 421, 796
Alw21I GWGCWC 1 cut(s) 674
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 5 cut(s) 119, 132, 405, 794, 908
AoxI GGCC 3 cut(s) 135, 477, 882
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 882
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 320, 897
Bbv12I GWGCWC 1 cut(s) 674
BbvCI CCTCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 393
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 3 cut(s) 599, 633, 941
BcoDI GTCTC 1 cut(s) 332
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 3 cut(s) 78, 629, 771
BfuAI ACCTGC 1 cut(s) 81
BmeRI GACNNNNNGTC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 882
BmiI GGNNCC 2 cut(s) 13, 126
BpiI GAAGAC 2 cut(s) 320, 897
BplI GAGNNNNNCTC 3 cut(s) 38, 70, 938
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 666
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 121, 144, 270
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 4 cut(s) 138, 151, 480, 745
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 4 cut(s) 63, 121, 144, 270
BseMI GCAATG 4 cut(s) 138, 151, 480, 745
BseMII CTCAG 3 cut(s) 212, 343, 849
BseNI ACTGG 1 cut(s) 435
BshFI GGCC 3 cut(s) 137, 479, 884
BsiHKAI GWGCWC 1 cut(s) 674
BsiSI CCGG 3 cut(s) 440, 465, 667
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 4 cut(s) 63, 121, 144, 270
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 3 cut(s) 137, 479, 884
Bsp1286I GDGCHC 2 cut(s) 264, 674
Bsp143I GATC 6 cut(s) 124, 410, 597, 696, 799, 900
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 1 cut(s) 472
BspANI GGCC 3 cut(s) 137, 479, 884
BspCNI CTCAG 3 cut(s) 211, 342, 850
BspHI TCATGA 2 cut(s) 549, 903
BspLI GGNNCC 2 cut(s) 13, 126
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 5 cut(s) 119, 132, 405, 794, 908
BsrDI GCAATG 4 cut(s) 138, 151, 480, 745
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 6 cut(s) 124, 410, 597, 696, 799, 900
BssT1I CCWWGG 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 362, 395
BstDEI CTNAG 3 cut(s) 198, 329, 858
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 6 cut(s) 127, 413, 600, 699, 802, 903
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 6 cut(s) 124, 410, 597, 696, 799, 900
BstMWI GCNNNNNNNGC 2 cut(s) 669, 873
BstV2I GAAGAC 2 cut(s) 320, 897
BstX2I RGATCY 2 cut(s) 124, 410
BstYI RGATCY 2 cut(s) 124, 410
BsuRI GGCC 3 cut(s) 137, 479, 884
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 3 cut(s) 163, 399, 459
BtsIMutI CAGTG 4 cut(s) 163, 399, 459, 589
BveI ACCTGC 1 cut(s) 81
CciI TCATGA 2 cut(s) 549, 903
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 882
CseI GACGC 1 cut(s) 856
Csp6I GTAC 2 cut(s) 36, 49
CviAII CATG 6 cut(s) 229, 489, 550, 850, 871, 904
CviQI GTAC 2 cut(s) 36, 49
DdeI CTNAG 3 cut(s) 198, 329, 858
DpnI GATC 6 cut(s) 126, 412, 599, 698, 801, 902
DpnII GATC 6 cut(s) 124, 410, 597, 696, 799, 900
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 362, 395
Eam1105I GACNNNNNGTC 1 cut(s) 502
EarI CTCTTC 2 cut(s) 362, 395
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 565, 606
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 6 cut(s) 232, 492, 553, 853, 874, 907
FaqI GGGAC 1 cut(s) 490
FatI CATG 6 cut(s) 228, 488, 549, 849, 870, 903
FblI GTMKAC 1 cut(s) 951
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 264
FspBI CTAG 3 cut(s) 78, 629, 771
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 3 cut(s) 137, 479, 884
HapII CCGG 3 cut(s) 440, 465, 667
HgaI GACGC 1 cut(s) 856
HhaI GCGC 1 cut(s) 93
Hin1II CATG 6 cut(s) 232, 492, 553, 853, 874, 907
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HpaII CCGG 3 cut(s) 440, 465, 667
Hpy166II GTNNAC 1 cut(s) 952
Hpy188I TCNGA 7 cut(s) 124, 238, 248, 602, 645, 735, 859
Hpy188III TCNNGA 6 cut(s) 57, 294, 380, 550, 682, 904
Hpy8I GTNNAC 1 cut(s) 952
HpyAV CCTTC 2 cut(s) 679, 920
HpyCH4IV ACGT 2 cut(s) 84, 845
HpyCH4V TGCA 7 cut(s) 143, 156, 306, 320, 573, 849, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 669, 873
HpyF3I CTNAG 3 cut(s) 198, 329, 858
HpySE526I ACGT 2 cut(s) 84, 845
Hsp92II CATG 6 cut(s) 232, 492, 553, 853, 874, 907
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 6 cut(s) 124, 410, 597, 696, 799, 900
LmnI GCTCC 1 cut(s) 17
MaeI CTAG 3 cut(s) 78, 629, 771
MaeII ACGT 2 cut(s) 84, 845
MaeIII GTNAC 4 cut(s) 80, 191, 518, 530
MalI GATC 6 cut(s) 126, 412, 599, 698, 801, 902
MboI GATC 6 cut(s) 124, 410, 597, 696, 799, 900
MboII GAAGA 6 cut(s) 17, 325, 349, 382, 902, 935
MfeI CAATTG 2 cut(s) 213, 568
MflI RGATCY 2 cut(s) 124, 410
MhlI GDGCHC 2 cut(s) 264, 674
MluCI AATT 6 cut(s) 30, 94, 213, 255, 301, 568
MlyI GAGTC 5 cut(s) 47, 334, 512, 869, 947
MmeI TCCRAC 2 cut(s) 39, 152
MseI TTAA 2 cut(s) 707, 830
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 3 cut(s) 440, 465, 667
MunI CAATTG 2 cut(s) 213, 568
MwoI GCNNNNNNNGC 2 cut(s) 669, 873
NcoI CCATGG 1 cut(s) 228
NdeII GATC 6 cut(s) 124, 410, 597, 696, 799, 900
NlaIII CATG 6 cut(s) 232, 492, 553, 853, 874, 907
NlaIV GGNNCC 2 cut(s) 13, 126
NmuCI GTSAC 2 cut(s) 80, 191
NsbI TGCGCA 1 cut(s) 92
PagI TCATGA 2 cut(s) 549, 903
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PfeI GAWTC 6 cut(s) 184, 233, 290, 468, 676, 837
PleI GAGTC 5 cut(s) 47, 333, 511, 868, 947
PpsI GAGTC 5 cut(s) 47, 333, 511, 868, 947
PspN4I GGNNCC 2 cut(s) 13, 126
PspPI GGNCC 1 cut(s) 882
PsuI RGATCY 2 cut(s) 124, 410
RsaI GTAC 2 cut(s) 37, 50
RsaNI GTAC 2 cut(s) 36, 49
RseI CAYNNNNRTG 1 cut(s) 156
SalI GTCGAC 1 cut(s) 950
SaqAI TTAA 2 cut(s) 707, 830
Sau3AI GATC 6 cut(s) 124, 410, 597, 696, 799, 900
Sau96I GGNCC 1 cut(s) 882
SchI GAGTC 5 cut(s) 47, 334, 512, 869, 947
SduI GDGCHC 2 cut(s) 264, 674
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SpeI ACTAGT 1 cut(s) 628
Sse9I AATT 6 cut(s) 30, 94, 213, 255, 301, 568
SsiI CCGC 1 cut(s) 472
SspMI CTAG 3 cut(s) 78, 629, 771
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 2 cut(s) 87, 848
TaqI TCGA 6 cut(s) 111, 182, 293, 674, 766, 951
TasI AATT 6 cut(s) 30, 94, 213, 255, 301, 568
TfiI GAWTC 6 cut(s) 184, 233, 290, 468, 676, 837
Tru1I TTAA 2 cut(s) 707, 830
Tru9I TTAA 2 cut(s) 707, 830
TscAI CASTG 4 cut(s) 163, 406, 466, 589
TseFI GTSAC 2 cut(s) 80, 191
Tsp45I GTSAC 2 cut(s) 80, 191
TspDTI ATGAA 6 cut(s) 140, 232, 477, 829, 866, 936
TspRI CASTG 4 cut(s) 163, 406, 466, 589
XmiI GTMKAC 1 cut(s) 951
XspI CTAG 3 cut(s) 78, 629, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.