Rh1DG408700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001452
Physical Location & Seq
Reverse (-)
62642877 .. 62645614
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG408700.1

Sequence Viewer

Length: 918 bp
ATGGAAGACTGTGTCTCTGCTGTGAGGAGATGGGAGGACTTGGAGACGGATATTTTGGTGAAGATTTTTCAGTCGTTTGATGTGTTTGAGTTAACTTCCGGAATAGCTCATGTTTGTAGTGGGTGGCGTTTGGCGTGCTGTGATCCTCTGCTGTGGAAGACGTTGGATTTGTCGATGATGAAATCTAATTTCATCAAAATCCCGTCAGAGCCTTATGTATATGTGGATGACCCGTCCGATAAGCTTTTGTCTCGTTTGTTGAAGATTTCAATGAGTCTCAGCAGGGGAAACATCACGACCTTGATTTTTCATTTCAACTTATATGTGAGCGATGATCAGTTGACTTATACTGCTCAAAGGTGCCCAAAGCTGAAACGACTAGTTTTGCCAGGTTGGAACAGAATAAAAAAGACAGGAATCTGCAAGGCCATTTCCTGCTGGAAGGATCTTGAATCCTTGACAATGCCTAGCATAGCGAATCCCCCATACTTCATAGAAGAGATTGCCAAGAACTGCAGGAATTTCAGAGAACTAAAGATCATGGGTCCTTGTGATATCTTTTTTGCTTCAACCCTAGTTGCATATCTTCCTAAGCTGAAGGTTTTAAGCCTCCGGTGCTCAATGCTCCTAAGGGAGGCTCTCCTCATGATCTTGGAGGGCCTACCACAGCTAGAAGTTCTGAATATTTCGCATTGCCTTCTTTTCGACCTCTCTCCATTGCCTACATCTAAAATTTTTTTGAGAGAGATCGATCCTTTTATCCATGAGAAGGCCTCTCGACTACGCAGGTTTTTGACTTGCAGTCAAGACACCTGCGTGATGTGCCAAAGGACGAAAACCGACGAGGGGCTCTTGAGGTGGTACAAGTATGAAGAAGGGCTATGGAAAGAAGACGAGGTGAGCTCCCTTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

305

Amino Acids

35.28

Weight (kDa)

7.87

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 16 - 57 1.3e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 821
Acc36I ACCTGC 2 cut(s) 777, 821
AccB1I GGYRCC 1 cut(s) 360
AccIII TCCGGA 1 cut(s) 98
AclWI GGATC 3 cut(s) 137, 453, 746
AcsI RAATTY 2 cut(s) 520, 732
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 863
AfiI CCNNNNNNNGG 3 cut(s) 634, 769, 846
AgsI TTSAA 5 cut(s) 262, 270, 316, 452, 570
AhdI GACNNNNNGTC 1 cut(s) 801
AhlI ACTAGT 1 cut(s) 379
AjnI CCWGG 1 cut(s) 388
AleI CACNNNNGTG 1 cut(s) 815
AluBI AGCT 6 cut(s) 107, 244, 370, 595, 670, 903
AluI AGCT 6 cut(s) 107, 244, 370, 595, 670, 903
Alw21I GWGCWC 2 cut(s) 620, 905
Alw26I GTCTC 4 cut(s) 19, 38, 255, 281
AlwI GGATC 3 cut(s) 137, 453, 746
Aor13HI TCCGGA 1 cut(s) 98
AoxI GGCC 3 cut(s) 426, 658, 771
ApoI RAATTY 2 cut(s) 520, 732
ArsI GACNNNNNNTTYG 4 cut(s) 37, 69, 151, 183
AspS9I GGNCC 2 cut(s) 545, 658
AsuHPI GGTGA 2 cut(s) 70, 910
AvaII GGWCC 1 cut(s) 545
AxyI CCTNAGG 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 360
BanII GRGCYC 2 cut(s) 852, 905
BbsI GAAGAC 3 cut(s) 12, 164, 897
Bbv12I GWGCWC 2 cut(s) 620, 905
BccI CCATC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 390
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 4 cut(s) 19, 38, 255, 281
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 4 cut(s) 380, 468, 575, 671
BfmI CTRYAG 1 cut(s) 514
BfuAI ACCTGC 2 cut(s) 777, 821
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 545
BmeRI GACNNNNNGTC 1 cut(s) 801
BmgT120I GGNCC 2 cut(s) 545, 658
BmiI GGNNCC 2 cut(s) 362, 546
BmrFI CCNGG 1 cut(s) 390
BpiI GAAGAC 3 cut(s) 12, 164, 897
BplI GAGNNNNNCTC 3 cut(s) 758, 790, 887
Bpu10I CCTNAGC 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 874
Bsa29I ATCGAT 1 cut(s) 750
BsaWI WCCGGW 2 cut(s) 98, 612
Bsc4I CCNNNNNNNGG 3 cut(s) 634, 769, 846
Bse21I CCTNAGG 1 cut(s) 629
Bse3DI GCAATG 2 cut(s) 691, 716
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 1 cut(s) 390
BseCI ATCGAT 1 cut(s) 750
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 3 cut(s) 634, 769, 846
BseMI GCAATG 2 cut(s) 691, 716
BseMII CTCAG 1 cut(s) 292
BseRI GAGGAG 2 cut(s) 40, 632
BseSI GKGCMC 1 cut(s) 365
BshFI GGCC 3 cut(s) 428, 660, 773
BshNI GGYRCC 1 cut(s) 360
BshVI ATCGAT 1 cut(s) 750
BsiHKAI GWGCWC 2 cut(s) 620, 905
BsiSI CCGG 2 cut(s) 99, 613
BslI CCNNNNNNNGG 3 cut(s) 634, 769, 846
BsmAI GTCTC 4 cut(s) 19, 38, 255, 281
BsmBI CGTCTC 1 cut(s) 38
BsnI GGCC 3 cut(s) 428, 660, 773
Bsp1286I GDGCHC 4 cut(s) 365, 620, 852, 905
Bsp13I TCCGGA 1 cut(s) 98
Bsp143I GATC 7 cut(s) 142, 334, 445, 537, 648, 747, 751
BspANI GGCC 3 cut(s) 428, 660, 773
BspCNI CTCAG 1 cut(s) 291
BspDI ATCGAT 1 cut(s) 750
BspEI TCCGGA 1 cut(s) 98
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 2 cut(s) 362, 546
BspMAI CTGCAG 1 cut(s) 518
BspMI ACCTGC 2 cut(s) 777, 821
BspPI GGATC 3 cut(s) 137, 453, 746
BspT107I GGYRCC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 691, 716
BssMI GATC 7 cut(s) 142, 334, 445, 537, 648, 747, 751
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 278, 591, 629
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 7 cut(s) 145, 337, 448, 540, 651, 750, 754
BstMAI GTCTC 4 cut(s) 19, 38, 255, 281
BstMBI GATC 7 cut(s) 142, 334, 445, 537, 648, 747, 751
BstMWI GCNNNNNNNGC 2 cut(s) 615, 822
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 1 cut(s) 365
BstV2I GAAGAC 3 cut(s) 12, 164, 897
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 750
Bsu36I CCTNAGG 1 cut(s) 629
BsuRI GGCC 3 cut(s) 428, 660, 773
BsuTUI ATCGAT 1 cut(s) 750
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 2 cut(s) 777, 821
Cac8I GCNNGC 1 cut(s) 136
CciI TCATGA 1 cut(s) 645
Cfr13I GGNCC 2 cut(s) 545, 658
ClaI ATCGAT 1 cut(s) 750
Csp6I GTAC 1 cut(s) 862
CviAII CATG 4 cut(s) 110, 541, 646, 764
CviQI GTAC 1 cut(s) 862
DdeI CTNAG 3 cut(s) 278, 591, 629
DpnI GATC 7 cut(s) 144, 336, 447, 539, 650, 749, 753
DpnII GATC 7 cut(s) 142, 334, 445, 537, 648, 747, 751
DriI GACNNNNNGTC 1 cut(s) 801
Eam1104I CTCTTC 1 cut(s) 492
Eam1105I GACNNNNNGTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 492
Ecl136II GAGCTC 1 cut(s) 903
Eco147I AGGCCT 1 cut(s) 773
Eco24I GRGCYC 2 cut(s) 852, 905
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 903
Eco57I CTGAAG 1 cut(s) 617
Eco81I CCTNAGG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 903
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoO109I RGGNCCY 2 cut(s) 545, 658
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 556
EcoT38I GRGCYC 2 cut(s) 852, 905
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 4 cut(s) 113, 544, 649, 767
FatI CATG 4 cut(s) 109, 540, 645, 763
FbaI TGATCA 1 cut(s) 334
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 2 cut(s) 852, 905
FspBI CTAG 4 cut(s) 380, 468, 575, 671
HaeIII GGCC 3 cut(s) 428, 660, 773
HapII CCGG 2 cut(s) 99, 613
Hin1II CATG 4 cut(s) 113, 544, 649, 767
HincII GTYRAC 2 cut(s) 93, 342
HindII GTYRAC 2 cut(s) 93, 342
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 4 cut(s) 274, 417, 452, 478
HpaI GTTAAC 1 cut(s) 93
HpaII CCGG 2 cut(s) 99, 613
HphI GGTGA 2 cut(s) 70, 910
Hpy166II GTNNAC 2 cut(s) 93, 342
Hpy188I TCNGA 4 cut(s) 208, 238, 527, 681
Hpy188III TCNNGA 7 cut(s) 99, 295, 449, 646, 777, 806, 853
Hpy8I GTNNAC 2 cut(s) 93, 342
Hpy99I CGWCG 1 cut(s) 845
HpyAV CCTTC 5 cut(s) 436, 592, 707, 763, 869
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 4 cut(s) 423, 516, 581, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 615, 822
HpyF3I CTNAG 3 cut(s) 278, 591, 629
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 4 cut(s) 113, 544, 649, 767
Kpn2I TCCGGA 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 334
KspAI GTTAAC 1 cut(s) 93
Kzo9I GATC 7 cut(s) 142, 334, 445, 537, 648, 747, 751
LmnI GCTCC 2 cut(s) 630, 908
MaeI CTAG 4 cut(s) 380, 468, 575, 671
MaeII ACGT 1 cut(s) 161
MalI GATC 7 cut(s) 144, 336, 447, 539, 650, 749, 753
MboI GATC 7 cut(s) 142, 334, 445, 537, 648, 747, 751
MboII GAAGA 8 cut(s) 17, 73, 169, 274, 509, 578, 884, 902
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 4 cut(s) 365, 620, 852, 905
MluCI AATT 3 cut(s) 187, 520, 732
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 144, 374
MroI TCCGGA 1 cut(s) 98
MseI TTAA 2 cut(s) 92, 605
MslI CAYNNNNRTG 1 cut(s) 815
MspI CCGG 2 cut(s) 99, 613
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 615, 822
NdeII GATC 7 cut(s) 142, 334, 445, 537, 648, 747, 751
NlaIII CATG 4 cut(s) 113, 544, 649, 767
NlaIV GGNNCC 2 cut(s) 362, 546
OliI CACNNNNGTG 1 cut(s) 815
PagI TCATGA 1 cut(s) 645
PaqCI CACCTGC 1 cut(s) 821
PceI AGGCCT 1 cut(s) 773
PfeI GAWTC 3 cut(s) 417, 452, 478
PflFI GACNNNGTC 1 cut(s) 11
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 905
Psp5II RGGWCCY 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 362, 546
PspPI GGNCC 2 cut(s) 545, 658
PspPPI RGGWCCY 1 cut(s) 545
PstI CTGCAG 1 cut(s) 518
PsuI RGATCY 1 cut(s) 445
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 1 cut(s) 863
RsaNI GTAC 1 cut(s) 862
RseI CAYNNNNRTG 1 cut(s) 815
SacI GAGCTC 1 cut(s) 905
SaqAI TTAA 2 cut(s) 92, 605
Sau3AI GATC 7 cut(s) 142, 334, 445, 537, 648, 747, 751
Sau96I GGNCC 2 cut(s) 545, 658
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 4 cut(s) 365, 620, 852, 905
SfcI CTRYAG 1 cut(s) 514
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 1 cut(s) 853
SmoI CTYRAG 1 cut(s) 853
SpeI ACTAGT 1 cut(s) 379
Sse9I AATT 3 cut(s) 187, 520, 732
SseBI AGGCCT 1 cut(s) 773
SspI AATATT 1 cut(s) 685
SspMI CTAG 4 cut(s) 380, 468, 575, 671
SstI GAGCTC 1 cut(s) 905
StuI AGGCCT 1 cut(s) 773
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 164
TaqI TCGA 4 cut(s) 173, 705, 750, 778
TasI AATT 3 cut(s) 187, 520, 732
TfiI GAWTC 3 cut(s) 417, 452, 478
Tru1I TTAA 2 cut(s) 92, 605
Tru9I TTAA 2 cut(s) 92, 605
TspDTI ATGAA 5 cut(s) 181, 194, 299, 481, 885
TspGWI ACGGA 1 cut(s) 62
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 545
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 2 cut(s) 520, 732
XspI CTAG 4 cut(s) 380, 468, 575, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.