Rw1G036740

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001452
Physical Location & Seq
Reverse (-)
64574288 .. 64575285
998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036740.1

Sequence Viewer

Length: 741 bp
ATGAAATCTAATTTCATCAAAATCCCGTCGGAGCCTTATGTATATGTGGATGACCCGTCCGATAAGCTCTTGTCTCGTTTGTTGAAGATTTCCATGAGTCTCAGCAGGGGAAACATCACGACCTTGATTTTTCATTTCAACTTATATGTGAGCGACGATCAGTTGACTTATACTGCTGAAAGGTGCCCAAAGCTGAAACGACTAGTTTTGCCAGGTTGGAACAGAATAAAAAAGACAGGAATCTGCAAGGCCATTTCCTGCTGGAAGGATCTTGAATCCTTGACAATGCCTAGCATAGCGAATCCCCCATACTTCATAGAAGAGATTGCCAAGAACTGCAGGAACTTCAGAGAACTAAAGATCATGGGTCCTTGTGATATCTTATTTGCTTCAACCCTAGTTGCATATCTTCCTAAGCTGAAGGTTTTAAGCCTCCGGTGCTCAATGCTCCTAAGGGAGGCTCTCCTCATGATCTTGGAGGGCCTACCACAGCTAGAAGTTCTGAATATTTCGCATTGCATTCTTTTCGACCTCTCTCCATCGCCTACATCTAAAAAAATTTTGAGAGAGATCGATCCTTTTATCCATGAGAAGGCCTCTCGACTACGCAGGTTTTTGACTTGCAGTCAAGACACCTGCGTGATGTGCCAAAGGACGAAAACCGATGAGGGGATCTTGAGGTGGTACAAGTATGAAGAAGGGCTATGGAAAGAAGACGAGGCGAGCTCCCTTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

246

Amino Acids

28.4

Weight (kDa)

8.85

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 2 cut(s) 600, 644
AccB1I GGYRCC 1 cut(s) 183
AclWI GGATC 3 cut(s) 276, 569, 680
AcsI RAATTY 1 cut(s) 558
AcuI CTGAAG 2 cut(s) 331, 440
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 3 cut(s) 457, 592, 669
AgsI TTSAA 4 cut(s) 85, 139, 275, 393
AhdI GACNNNNNGTC 1 cut(s) 624
AhlI ACTAGT 1 cut(s) 202
AjnI CCWGG 1 cut(s) 211
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 5 cut(s) 67, 193, 418, 493, 726
AluI AGCT 5 cut(s) 67, 193, 418, 493, 726
Alw21I GWGCWC 2 cut(s) 443, 728
Alw26I GTCTC 2 cut(s) 78, 104
AlwI GGATC 3 cut(s) 276, 569, 680
AoxI GGCC 3 cut(s) 249, 481, 594
ApoI RAATTY 1 cut(s) 558
AspS9I GGNCC 2 cut(s) 368, 481
AvaII GGWCC 1 cut(s) 368
AxyI CCTNAGG 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 720
Bbv12I GWGCWC 2 cut(s) 443, 728
BccI CCATC 1 cut(s) 547
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 78, 104
BcuI ACTAGT 1 cut(s) 202
BfaI CTAG 4 cut(s) 203, 291, 398, 494
BfmI CTRYAG 1 cut(s) 337
BfuAI ACCTGC 2 cut(s) 600, 644
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 368
BmeRI GACNNNNNGTC 1 cut(s) 624
BmgT120I GGNCC 2 cut(s) 368, 481
BmiI GGNNCC 3 cut(s) 33, 185, 369
BmrFI CCNGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 720
BplI GAGNNNNNCTC 3 cut(s) 581, 613, 710
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 697
Bsa29I ATCGAT 1 cut(s) 573
BsaWI WCCGGW 1 cut(s) 435
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 592, 669
Bse21I CCTNAGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 514
BseBI CCWGG 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 573
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 3 cut(s) 457, 592, 669
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 188
BshFI GGCC 3 cut(s) 251, 483, 596
BshNI GGYRCC 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 573
BsiHKAI GWGCWC 2 cut(s) 443, 728
BsiSI CCGG 1 cut(s) 436
BslI CCNNNNNNNGG 3 cut(s) 457, 592, 669
BsmAI GTCTC 2 cut(s) 78, 104
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 3 cut(s) 251, 483, 596
Bsp1286I GDGCHC 3 cut(s) 188, 443, 728
Bsp143I GATC 7 cut(s) 157, 268, 360, 471, 570, 574, 672
BspANI GGCC 3 cut(s) 251, 483, 596
BspCNI CTCAG 1 cut(s) 114
BspDI ATCGAT 1 cut(s) 573
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 3 cut(s) 33, 185, 369
BspMAI CTGCAG 1 cut(s) 341
BspMI ACCTGC 2 cut(s) 600, 644
BspPI GGATC 3 cut(s) 276, 569, 680
BspT107I GGYRCC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 514
BssMI GATC 7 cut(s) 157, 268, 360, 471, 570, 574, 672
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 3 cut(s) 101, 414, 452
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 7 cut(s) 160, 271, 363, 474, 573, 577, 675
BstMAI GTCTC 2 cut(s) 78, 104
BstMBI GATC 7 cut(s) 157, 268, 360, 471, 570, 574, 672
BstMWI GCNNNNNNNGC 2 cut(s) 438, 645
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 2 cut(s) 268, 672
BstYI RGATCY 2 cut(s) 268, 672
Bsu15I ATCGAT 1 cut(s) 573
Bsu36I CCTNAGG 1 cut(s) 452
BsuRI GGCC 3 cut(s) 251, 483, 596
BsuTUI ATCGAT 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 1 cut(s) 55
BveI ACCTGC 2 cut(s) 600, 644
Cac8I GCNNGC 1 cut(s) 724
CciI TCATGA 1 cut(s) 468
Cfr13I GGNCC 2 cut(s) 368, 481
ClaI ATCGAT 1 cut(s) 573
Csp6I GTAC 1 cut(s) 685
CviAII CATG 4 cut(s) 94, 364, 469, 587
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 3 cut(s) 101, 414, 452
DpnI GATC 7 cut(s) 159, 270, 362, 473, 572, 576, 674
DpnII GATC 7 cut(s) 157, 268, 360, 471, 570, 574, 672
DriI GACNNNNNGTC 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 315
Eam1105I GACNNNNNGTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 726
Eco147I AGGCCT 1 cut(s) 596
Eco24I GRGCYC 1 cut(s) 728
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 726
Eco57I CTGAAG 2 cut(s) 331, 440
Eco81I CCTNAGG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 726
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoO109I RGGNCCY 2 cut(s) 368, 481
EcoRII CCWGG 1 cut(s) 211
EcoRV GATATC 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 728
FaeI CATG 4 cut(s) 97, 367, 472, 590
FatI CATG 4 cut(s) 93, 363, 468, 586
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 728
FspBI CTAG 4 cut(s) 203, 291, 398, 494
HaeIII GGCC 3 cut(s) 251, 483, 596
HapII CCGG 1 cut(s) 436
Hin1II CATG 4 cut(s) 97, 367, 472, 590
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 4 cut(s) 97, 240, 275, 301
HpaII CCGG 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 4 cut(s) 31, 61, 350, 504
Hpy188III TCNNGA 6 cut(s) 118, 272, 469, 600, 629, 676
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 2 cut(s) 31, 158
HpyAV CCTTC 4 cut(s) 259, 415, 586, 692
HpyCH4V TGCA 5 cut(s) 246, 339, 404, 519, 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 438, 645
HpyF3I CTNAG 3 cut(s) 101, 414, 452
Hsp92II CATG 4 cut(s) 97, 367, 472, 590
Kzo9I GATC 7 cut(s) 157, 268, 360, 471, 570, 574, 672
LmnI GCTCC 3 cut(s) 31, 453, 731
MaeI CTAG 4 cut(s) 203, 291, 398, 494
MalI GATC 7 cut(s) 159, 270, 362, 473, 572, 576, 674
MboI GATC 7 cut(s) 157, 268, 360, 471, 570, 574, 672
MboII GAAGA 5 cut(s) 97, 332, 401, 707, 725
MflI RGATCY 2 cut(s) 268, 672
MhlI GDGCHC 3 cut(s) 188, 443, 728
MluCI AATT 2 cut(s) 10, 558
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 2 cut(s) 9, 197
MnlI CCTC 9 cut(s) 443, 451, 472, 476, 542, 607, 661, 672, 712
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 638
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 438, 645
NdeII GATC 7 cut(s) 157, 268, 360, 471, 570, 574, 672
NlaIII CATG 4 cut(s) 97, 367, 472, 590
NlaIV GGNNCC 3 cut(s) 33, 185, 369
OliI CACNNNNGTG 1 cut(s) 638
PagI TCATGA 1 cut(s) 468
PaqCI CACCTGC 1 cut(s) 644
PceI AGGCCT 1 cut(s) 596
PctI GAATGC 1 cut(s) 519
PfeI GAWTC 3 cut(s) 240, 275, 301
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PpuMI RGGWCCY 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 728
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 33, 185, 369
PspPI GGNCC 2 cut(s) 368, 481
PspPPI RGGWCCY 1 cut(s) 368
PstI CTGCAG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 268, 672
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
RseI CAYNNNNRTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 728
SaqAI TTAA 1 cut(s) 428
Sau3AI GATC 7 cut(s) 157, 268, 360, 471, 570, 574, 672
Sau96I GGNCC 2 cut(s) 368, 481
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 3 cut(s) 188, 443, 728
SfcI CTRYAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
SpeI ACTAGT 1 cut(s) 202
Sse9I AATT 2 cut(s) 10, 558
SseBI AGGCCT 1 cut(s) 596
SspI AATATT 1 cut(s) 508
SspMI CTAG 4 cut(s) 203, 291, 398, 494
SstI GAGCTC 1 cut(s) 728
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 1 cut(s) 211
TaqI TCGA 3 cut(s) 528, 573, 601
TasI AATT 2 cut(s) 10, 558
TfiI GAWTC 3 cut(s) 240, 275, 301
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TspDTI ATGAA 5 cut(s) 4, 17, 122, 304, 708
VpaK11BI GGWCC 1 cut(s) 368
XagI CCTNNNNNAGG 1 cut(s) 455
XapI RAATTY 1 cut(s) 558
XspI CTAG 4 cut(s) 203, 291, 398, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.