RchiOBHm_Chr1g0377081

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
64175530 .. 64175889
360 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60068

Sequence Viewer

Length: 360 bp
ATGAAATCTGATTTCATCTACATTCTTGTCGAGCCCTATATTTATGTTTCTGAAAAGTCGGATTCGATATTGAGTTGCTTTCTGAAGAGTGCATTAAGTCTTAGCAAGGGGAACATAATCACCTTGATCTTCCATCCCAACTTGTATCTGCCTAATAATCTCTTCAATTACACTGCTGAAAGGTCCCTGAAGCTGAAACGGCTGGTTATGCAGGCATGGAACAGATTAAATAGTGATGGAATCTGCAAGGCCATTGCTTGTTGGAAAGACCTTGAATCCCTCACAATAGAAGACACTGACAACAAAAGCTTCTCATACCTCATCCACCAGATTTCGAACAACTGCAAGAACTTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.78

Weight (kDa)

8.67

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 104, 209
AgsI TTSAA 3 cut(s) 166, 275, 355
AluBI AGCT 2 cut(s) 193, 309
AluI AGCT 2 cut(s) 193, 309
AoxI GGCC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 335
AvaII GGWCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 297
BccI CCATC 2 cut(s) 141, 230
BceAI ACGGC 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 252
BseGI GGATG 2 cut(s) 133, 321
BseMI GCAATG 1 cut(s) 252
BshFI GGCC 1 cut(s) 251
BslFI GGGAC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 252
BssMI GATC 1 cut(s) 126
Bst6I CTCTTC 2 cut(s) 80, 167
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 133, 321
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 199, 208
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 2 cut(s) 133, 321
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 294
Cac8I GCNNGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 183
CviAII CATG 1 cut(s) 216
CviJI RGCY 5 cut(s) 34, 193, 202, 251, 309
CviKI_1 RGCY 5 cut(s) 34, 193, 202, 251, 309
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 80, 167
EarI CTCTTC 2 cut(s) 80, 167
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 104, 209
EcoO109I RGGNCCY 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 1 cut(s) 219
FaiI YATR 6 cut(s) 39, 45, 116, 209, 217, 316
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 215
FokI GGATG 2 cut(s) 120, 308
FriOI GRGCYC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 3 cut(s) 62, 240, 275
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 4 cut(s) 10, 52, 61, 84
HpyCH4V TGCA 4 cut(s) 92, 211, 246, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 208
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 4 cut(s) 188, 197, 200, 341
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 4 cut(s) 97, 121, 154, 302
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 166
MmeI TCCRAC 2 cut(s) 39, 242
MnlI CCTC 2 cut(s) 290, 329
MseI TTAA 2 cut(s) 95, 227
MwoI GCNNNNNNNGC 2 cut(s) 199, 208
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 185
NspV TTCGAA 1 cut(s) 335
PfeI GAWTC 3 cut(s) 62, 240, 275
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 183
PspPPI RGGWCCY 1 cut(s) 183
SaqAI TTAA 2 cut(s) 95, 227
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 183
SduI GDGCHC 1 cut(s) 36
SetI ASST 6 cut(s) 125, 185, 195, 273, 311, 321
SfuI TTCGAA 1 cut(s) 335
SinI GGWCC 1 cut(s) 183
Sse9I AATT 1 cut(s) 166
TaqI TCGA 3 cut(s) 30, 65, 335
TasI AATT 1 cut(s) 166
TfiI GAWTC 3 cut(s) 62, 240, 275
Tru1I TTAA 2 cut(s) 95, 227
Tru9I TTAA 2 cut(s) 95, 227
TscAI CASTG 2 cut(s) 178, 301
TspDTI ATGAA 2 cut(s) 4, 17
TspRI CASTG 2 cut(s) 178, 301
VpaK11BI GGWCC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.