Prupe.2G293100_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001452
Physical Location & Seq
Reverse (-)
28560330 .. 28561880
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G293100.1

Sequence Viewer

Length: 978 bp
ATGGAATGGGAAGATGGGAAGACTTTGGGGAGATGGGAAGACCTCAGCATTGACATATTGTGGAAGATTTTTGAGTCCTTCAACGACGTCTCTGATTTATCTTCCGCCGTTGAGAAGGTCCATTGCAGTGCCGTTTGCAGTGCATGGCGTTCGGCTCTCTGCGATCCCCAGCTTTGGCATACACTTGATTTGTCAATGATTAAACATAATTTCATCAAAACCAAAGATGAGCCGTATGTTTATGTTTGCAGCCAGTCCGATTTGACATTGAGTCGTGTTTTGAAGGTTTCTCTGAGTCTCAGCCGCCAAAACATAACCACCTTGATTTTCAATCTCCAGTTATATGTCCCCGACGACCTCTTCACTTACACCGCTGAAAGGTGCCCGAAGCTGAGACGATTAGTTATGCCATCTTGGAACAAAATAAAGATTGATGGCATCAGCAAGGGCATTGGGTGTTGGAAACATCTTGAATCGCTGACAATAGGGAACATAGAAAAGTATCAATACCTCACTCTCTTGCAGGTGATTTACTACAACTGCAACAACTTCAGGGAACTCAAATTGATGGGTACTTGTGATACATATTCCTTTGCCTCGGCAATGGTTAGATATCTTCCAAAACTGGAGGTTTTAAGCCTCCGGTGCTCGATGTTGTCGAAGGACGCTTTGATGGTGATATTGGAGAGCCTACCCAACTTGGAAGTTCTCAACATATCGCATTGCGTTGTATTGGATGAAACCCATCAGCCTCATCAACCTTTTAGAATTGTTGAGGAGCTTGATGCATCCATTGTTCACAAGGCTTCAAGGTTAAAGAGATTTATAACGTGCATGCGTATGCCTACGGCCATGCGTGTGCAGGAAGACTCGTGCAGCATGTGCCAAAGGACCAGAAACGACGAGGGGATCATCAGGTGGCATAGATATGAACAAGGGATGTGGAAAGCAGATGAAGTGGCTTCCCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

326

Amino Acids

37.72

Weight (kDa)

6.75

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 827
AarI CACCTGC 1 cut(s) 514
AatII GACGTC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 514
AccB1I GGYRCC 1 cut(s) 381
AciI CCGC 3 cut(s) 105, 304, 372
AclWI GGATC 2 cut(s) 158, 917
AcoI YGGCCR 1 cut(s) 849
AcuI CTGAAG 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 2 cut(s) 174, 378
AgsI TTSAA 5 cut(s) 82, 283, 331, 473, 810
AhdI GACNNNNNGTC 1 cut(s) 270
AluBI AGCT 3 cut(s) 172, 391, 781
AluI AGCT 3 cut(s) 172, 391, 781
Alw21I GWGCWC 1 cut(s) 650
Alw26I GTCTC 3 cut(s) 94, 302, 388
AlwI GGATC 2 cut(s) 158, 917
AoxI GGCC 1 cut(s) 849
ApeKI GCWGC 2 cut(s) 249, 876
AspS9I GGNCC 2 cut(s) 118, 891
AsuHPI GGTGA 2 cut(s) 538, 688
AvaII GGWCC 2 cut(s) 118, 891
BaeGI GKGCMC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 381
BauI CACGAG 1 cut(s) 871
BbsI GAAGAC 3 cut(s) 26, 45, 873
Bbv12I GWGCWC 1 cut(s) 650
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 261, 888
BccI CCATC 7 cut(s) 8, 27, 418, 428, 562, 667, 753
BceAI ACGGC 4 cut(s) 92, 116, 217, 864
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BcoDI GTCTC 3 cut(s) 94, 302, 388
BfuAI ACCTGC 1 cut(s) 514
BisI GCNGC 3 cut(s) 250, 304, 877
BlsI GCNGC 3 cut(s) 251, 305, 878
Bme18I GGWCC 2 cut(s) 118, 891
BmeRI GACNNNNNGTC 1 cut(s) 270
BmgT120I GGNCC 2 cut(s) 118, 891
BmiI GGNNCC 1 cut(s) 383
BmsI GCATC 3 cut(s) 447, 775, 797
BpiI GAAGAC 3 cut(s) 26, 45, 873
BpmI CTGGAG 2 cut(s) 320, 647
Bpu10I CCTNAGC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 597
BsaWI WCCGGW 1 cut(s) 642
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 378
Bse1I ACTGG 3 cut(s) 253, 337, 630
Bse3DI GCAATG 3 cut(s) 121, 609, 721
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 3 cut(s) 742, 788, 945
BseLI CCNNNNNNNGG 2 cut(s) 174, 378
BseMI GCAATG 3 cut(s) 121, 609, 721
BseMII CTCAG 4 cut(s) 58, 284, 313, 383
BseNI ACTGG 3 cut(s) 253, 337, 630
BseRI GAGGAG 1 cut(s) 791
BseSI GKGCMC 1 cut(s) 386
BseXI GCAGC 2 cut(s) 261, 888
BseYI CCCAGC 1 cut(s) 168
BsgI GTGCAG 2 cut(s) 881, 895
BshFI GGCC 1 cut(s) 851
BshNI GGYRCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 650
BsiSI CCGG 1 cut(s) 643
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 174, 378
BsmAI GTCTC 3 cut(s) 94, 302, 388
BsmBI CGTCTC 2 cut(s) 94, 388
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 851
Bsp1286I GDGCHC 2 cut(s) 386, 650
Bsp143I GATC 2 cut(s) 163, 909
BspACI CCGC 3 cut(s) 105, 304, 372
BspANI GGCC 1 cut(s) 851
BspCNI CTCAG 4 cut(s) 57, 285, 312, 384
BspLI GGNNCC 1 cut(s) 383
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 2 cut(s) 158, 917
BspT107I GGYRCC 1 cut(s) 381
BsrDI GCAATG 3 cut(s) 121, 609, 721
BsrI ACTGG 3 cut(s) 253, 337, 630
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 2 cut(s) 163, 909
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 871
Bst2BI CACGAG 1 cut(s) 871
Bst6I CTCTTC 1 cut(s) 365
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 882
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 4 cut(s) 44, 293, 299, 392
BstF5I GGATG 3 cut(s) 742, 788, 945
BstKTI GATC 2 cut(s) 166, 912
BstMAI GTCTC 3 cut(s) 94, 302, 388
BstMBI GATC 2 cut(s) 163, 909
BstMWI GCNNNNNNNGC 3 cut(s) 645, 882, 968
BstNSI RCATGY 2 cut(s) 838, 883
BstSLI GKGCMC 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 261, 888
BstV2I GAAGAC 3 cut(s) 26, 45, 873
BsuRI GGCC 1 cut(s) 851
BtsCI GGATG 3 cut(s) 742, 788, 945
BtsI GCAGTG 2 cut(s) 133, 145
BtsIMutI CAGTG 2 cut(s) 133, 145
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 836
Cfr13I GGNCC 2 cut(s) 118, 891
CseI GACGC 1 cut(s) 674
Csp6I GTAC 1 cut(s) 573
CspCI CAANNNNNGTGG 2 cut(s) 923, 958
CviAII CATG 4 cut(s) 144, 835, 853, 880
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 4 cut(s) 44, 293, 299, 392
DpnI GATC 2 cut(s) 165, 911
DpnII GATC 2 cut(s) 163, 909
DriI GACNNNNNGTC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 849
Eam1104I CTCTTC 1 cut(s) 365
Eam1105I GACNNNNNGTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 365
EciI GGCGGA 1 cut(s) 94
Eco32I GATATC 1 cut(s) 614
Eco47I GGWCC 2 cut(s) 118, 891
Eco57I CTGAAG 1 cut(s) 535
EcoRV GATATC 1 cut(s) 614
EcoT22I ATGCAT 1 cut(s) 790
Esp3I CGTCTC 2 cut(s) 94, 388
FaeI CATG 4 cut(s) 147, 838, 856, 883
FaqI GGGAC 1 cut(s) 332
FatI CATG 4 cut(s) 143, 834, 852, 879
Fnu4HI GCNGC 3 cut(s) 250, 304, 877
FokI GGATG 3 cut(s) 749, 775, 952
Fsp4HI GCNGC 3 cut(s) 250, 304, 877
GluI GCNGC 3 cut(s) 250, 304, 877
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 2 cut(s) 320, 647
HaeIII GGCC 1 cut(s) 851
HapII CCGG 1 cut(s) 643
HgaI GACGC 1 cut(s) 674
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 147, 838, 856, 883
HinfI GANTC 5 cut(s) 74, 271, 295, 473, 869
HpaII CCGG 1 cut(s) 643
HphI GGTGA 2 cut(s) 538, 688
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 3 cut(s) 94, 259, 294
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 3 cut(s) 89, 356, 905
HpyAV CCTTC 4 cut(s) 88, 109, 277, 655
HpyCH4IV ACGT 2 cut(s) 87, 830
HpyF10VI GCNNNNNNNGC 3 cut(s) 645, 882, 968
HpyF3I CTNAG 4 cut(s) 44, 293, 299, 392
HpySE526I ACGT 2 cut(s) 87, 830
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 147, 838, 856, 883
Kzo9I GATC 2 cut(s) 163, 909
LmnI GCTCC 1 cut(s) 778
Lsp1109I GCAGC 2 cut(s) 261, 888
LweI GCATC 3 cut(s) 447, 775, 797
MaeII ACGT 2 cut(s) 87, 830
MalI GATC 2 cut(s) 165, 911
MboI GATC 2 cut(s) 163, 909
MboII GAAGA 8 cut(s) 23, 31, 50, 76, 93, 352, 608, 878
MhlI GDGCHC 2 cut(s) 386, 650
MluCI AATT 3 cut(s) 208, 563, 768
MlyI GAGTC 4 cut(s) 83, 280, 304, 863
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 9 cut(s) 53, 368, 521, 607, 622, 650, 762, 769, 898
Mph1103I ATGCAT 1 cut(s) 790
MseI TTAA 3 cut(s) 201, 635, 815
MslI CAYNNNNRTG 4 cut(s) 126, 839, 857, 927
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 1 cut(s) 643
MwoI GCNNNNNNNGC 3 cut(s) 645, 882, 968
NdeII GATC 2 cut(s) 163, 909
NlaIII CATG 4 cut(s) 147, 838, 856, 883
NlaIV GGNNCC 1 cut(s) 383
NmeAIII GCCGAG 1 cut(s) 578
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 2 cut(s) 838, 883
PaeI GCATGC 1 cut(s) 838
PaqCI CACCTGC 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 656
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 3 cut(s) 251, 305, 878
PleI GAGTC 4 cut(s) 82, 279, 303, 863
PpsI GAGTC 4 cut(s) 82, 279, 303, 863
PsiI TTATAA 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 2 cut(s) 118, 891
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 4 cut(s) 126, 839, 857, 927
SaqAI TTAA 3 cut(s) 201, 635, 815
SatI GCNGC 3 cut(s) 250, 304, 877
Sau3AI GATC 2 cut(s) 163, 909
Sau96I GGNCC 2 cut(s) 118, 891
SchI GAGTC 4 cut(s) 83, 280, 304, 863
SduI GDGCHC 2 cut(s) 386, 650
SfaNI GCATC 3 cut(s) 447, 775, 797
SinI GGWCC 2 cut(s) 118, 891
SmiMI CAYNNNNRTG 4 cut(s) 126, 839, 857, 927
SphI GCATGC 1 cut(s) 838
Sse9I AATT 3 cut(s) 208, 563, 768
SsiI CCGC 3 cut(s) 105, 304, 372
TaiI ACGT 2 cut(s) 90, 833
TaqI TCGA 2 cut(s) 650, 659
TasI AATT 3 cut(s) 208, 563, 768
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 3 cut(s) 201, 635, 815
Tru9I TTAA 3 cut(s) 201, 635, 815
TscAI CASTG 2 cut(s) 133, 145
TseI GCWGC 2 cut(s) 249, 876
TspDTI ATGAA 4 cut(s) 202, 753, 945, 969
TspRI CASTG 2 cut(s) 133, 145
VpaK11BI GGWCC 2 cut(s) 118, 891
XceI RCATGY 2 cut(s) 838, 883
ZraI GACGTC 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.