RchiOBHm_Chr1g0377091

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001452
Physical Location & Seq
Reverse (-)
64176526 .. 64178497
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60069

Sequence Viewer

Length: 951 bp
ATGGAAGACGGTGACTCCCTCGTAACCCTGAGAAGATGGGAAGATCTAAACACCGATATACTACGTAAGATTTTCGGGACTTTCGATTACATCACTGATGCGTCTGCAGCCATTGCTCAGGTTCGTTGCAGCGCCGTTTGTATTGCTTGGCGTTCGATTCTCTGCGATCCTCAGCTCTGGAGCACTCTCGATTTGTCGTGGTTGAAATCCAACTTCATCAAGATCCATCAGGAGCCGTACGTCTATGTTAATAGCCGGTCCGAAGAGCAATTGAGCCGGGTTTTGAAGGTGTCGTTGAGTCTTAGCAGAGGTAACATTACCACATTGGTTTTTAACCCGGAGTTGTATATCAGCGACGACCAGCTGACGTCTACTGCTGAAAGGTGCCCGAATCTGAAACGACTAGTGATGCCAACCGGGGACAGAATAAAGAAGACTGGAATCTGCAAGGCAATTCAAAACTGGCAAGATCTCGAATCGCTGACAGTGCCGGGGATAATGTATCCCCCATATCTCATGGAGGTGATCTCCAAACACTGCGGTAAATTCAGGGAACTAAAGATCATGGGTCGTTTCGATGTCCGATTTGCTTCAACATTAGTTGGTACTGATCTTCCGAATCTCAAGGTCTTGAGCCTGCGGTGTTCGCAGCTGGTAAGGGAAGCTTTGATCACTATATTGGACGGCTTACCACAACTAGAAGTCCTCAATATAGCACACTGTGTGCTTCTGATTGAACCCCCGCGGCGTAATCAGCCTCTTCAAATTGTTGAAGAGCTTGATGAAGCTATTCTTAAGAAGGCTGCTCGGTTGCAGAGATTCATAACGTGCATGCAAGTAGGCCGGTGCATCATGTGCCGAAGGGCCAGAAACGATGGGGGGATTATGAAGTGGTATAAATATGAAGCAGGGCTCTGGAAACAAGATGAGGTGAGCTCTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

316

Amino Acids

36.14

Weight (kDa)

8.59

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 179 - 280 1e-05 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 371
AccII CGCG 1 cut(s) 745
AciI CCGC 4 cut(s) 540, 640, 743, 745
AclWI GGATC 2 cut(s) 161, 217
AcsI RAATTY 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 368
AdeI CACNNNGTG 2 cut(s) 722, 724
AfaI GTAC 2 cut(s) 239, 607
AflII CTTAAG 1 cut(s) 794
AgsI TTSAA 7 cut(s) 205, 286, 458, 594, 737, 764, 773
AhlI ACTAGT 1 cut(s) 403
AluBI AGCT 7 cut(s) 175, 364, 652, 665, 778, 788, 936
AluI AGCT 7 cut(s) 175, 364, 652, 665, 778, 788, 936
Alw21I GWGCWC 2 cut(s) 185, 938
AlwI GGATC 2 cut(s) 161, 217
AoxI GGCC 2 cut(s) 841, 864
ApeKI GCWGC 4 cut(s) 107, 129, 649, 803
ApoI RAATTY 1 cut(s) 545
Asp700I GAANNNNTTC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 258, 864
AsuC2I CCSGG 4 cut(s) 278, 338, 418, 492
AsuHPI GGTGA 3 cut(s) 23, 535, 943
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 389
BanI GGYRCC 1 cut(s) 384
BanII GRGCYC 2 cut(s) 915, 938
BbsI GAAGAC 2 cut(s) 12, 440
Bbv12I GWGCWC 2 cut(s) 185, 938
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 119, 141, 661, 790
BccI CCATC 3 cut(s) 30, 234, 869
BceAI ACGGC 3 cut(s) 119, 220, 700
BciVI GTATCC 1 cut(s) 513
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 4 cut(s) 278, 338, 418, 492
BcuI ACTAGT 1 cut(s) 403
BfaI CTAG 2 cut(s) 404, 698
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 794
BfuI GTATCC 1 cut(s) 513
BglII AGATCT 2 cut(s) 43, 469
BisI GCNGC 5 cut(s) 108, 130, 650, 746, 804
BlsI GCNGC 5 cut(s) 109, 131, 651, 747, 805
Bme1390I CCNGG 4 cut(s) 278, 338, 418, 492
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 258, 864
BmiI GGNNCC 2 cut(s) 234, 386
BmrFI CCNGG 4 cut(s) 278, 338, 418, 492
BmsI GCATC 3 cut(s) 88, 399, 858
BpiI GAAGAC 2 cut(s) 12, 440
BplI GAGNNNNNCTC 3 cut(s) 512, 544, 920
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 2 cut(s) 117, 171
BpuEI CTTGAG 2 cut(s) 608, 652
BpuMI CCSGG 4 cut(s) 278, 338, 418, 492
BsaAI YACGTR 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 417, 491, 743
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse118I RCCGGY 2 cut(s) 255, 843
Bse1I ACTGG 2 cut(s) 442, 467
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 417, 491, 743
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 20, 131, 185
BseNI ACTGG 2 cut(s) 442, 467
BseSI GKGCMC 1 cut(s) 389
BseXI GCAGC 4 cut(s) 119, 141, 661, 790
Bsh1236I CGCG 1 cut(s) 745
BshFI GGCC 2 cut(s) 843, 866
BshNI GGYRCC 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 185, 938
BsiSI CCGG 6 cut(s) 256, 277, 338, 417, 491, 844
BsiWI CGTACG 1 cut(s) 237
BslFI GGGAC 2 cut(s) 91, 434
BsmFI GGGAC 2 cut(s) 91, 434
BsnI GGCC 2 cut(s) 843, 866
Bsp1286I GDGCHC 4 cut(s) 185, 389, 915, 938
Bsp143I GATC 8 cut(s) 43, 166, 222, 469, 525, 561, 610, 669
BspACI CCGC 4 cut(s) 540, 640, 743, 745
BspANI GGCC 2 cut(s) 843, 866
BspCNI CTCAG 3 cut(s) 21, 130, 184
BspFNI CGCG 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 234, 386
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 161, 217
BspQI GCTCTTC 2 cut(s) 258, 768
BspT107I GGYRCC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 255, 843
BsrI ACTGG 2 cut(s) 442, 467
BssAI RCCGGY 2 cut(s) 255, 843
BssECI CCNNGG 3 cut(s) 417, 491, 743
BssMI GATC 8 cut(s) 43, 166, 222, 469, 525, 561, 610, 669
BssNI GRCGYC 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 11, 487, 722
Bst6I CTCTTC 3 cut(s) 258, 765, 768
BstACI GRCGYC 1 cut(s) 368
BstAFI CTTAAG 1 cut(s) 794
BstAPI GCANNNNNTGC 2 cut(s) 113, 855
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 638, 833
BstDEI CTNAG 4 cut(s) 29, 117, 171, 302
BstDSI CCRYGG 1 cut(s) 743
BstFNI CGCG 1 cut(s) 745
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 8 cut(s) 46, 169, 225, 472, 528, 564, 613, 672
BstMBI GATC 8 cut(s) 43, 166, 222, 469, 525, 561, 610, 669
BstMWI GCNNNNNNNGC 6 cut(s) 107, 113, 487, 646, 754, 855
BstNSI RCATGY 1 cut(s) 835
BstSCI CCNGG 4 cut(s) 276, 336, 416, 490
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 389
BstSNI TACGTA 1 cut(s) 65
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 4 cut(s) 119, 141, 661, 790
BstV2I GAAGAC 2 cut(s) 12, 440
BstX2I RGATCY 3 cut(s) 43, 222, 469
BstYI RGATCY 3 cut(s) 43, 222, 469
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 2 cut(s) 843, 866
BtgI CCRYGG 1 cut(s) 743
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 4 cut(s) 93, 492, 535, 718
Cac8I GCNNGC 2 cut(s) 638, 833
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 2 cut(s) 255, 843
Cfr13I GGNCC 2 cut(s) 258, 864
Cfr42I CCGCGG 1 cut(s) 746
CpoI CGGWCCG 1 cut(s) 258
CseI GACGC 1 cut(s) 90
Csp6I GTAC 2 cut(s) 238, 606
CspI CGGWCCG 1 cut(s) 258
CviAII CATG 4 cut(s) 517, 565, 832, 853
CviQI GTAC 2 cut(s) 238, 606
DdeI CTNAG 4 cut(s) 29, 117, 171, 302
DpnI GATC 8 cut(s) 45, 168, 224, 471, 527, 563, 612, 671
DpnII GATC 8 cut(s) 43, 166, 222, 469, 525, 561, 610, 669
DraIII CACNNNGTG 2 cut(s) 722, 724
Eam1104I CTCTTC 3 cut(s) 258, 765, 768
EarI CTCTTC 3 cut(s) 258, 765, 768
Ecl136II GAGCTC 1 cut(s) 936
Eco105I TACGTA 1 cut(s) 65
Eco24I GRGCYC 2 cut(s) 915, 938
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 936
EcoICRI GAGCTC 1 cut(s) 936
EcoT38I GRGCYC 2 cut(s) 915, 938
FaeI CATG 4 cut(s) 520, 568, 835, 856
FalI AAGNNNNNCTT 4 cut(s) 649, 681, 777, 809
FaqI GGGAC 2 cut(s) 91, 434
FatI CATG 4 cut(s) 516, 564, 831, 852
FauI CCCGC 1 cut(s) 750
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 5 cut(s) 108, 130, 650, 746, 804
FriOI GRGCYC 2 cut(s) 915, 938
Fsp4HI GCNGC 5 cut(s) 108, 130, 650, 746, 804
FspBI CTAG 2 cut(s) 404, 698
GlaI GCGC 1 cut(s) 133
GluI GCNGC 5 cut(s) 108, 130, 650, 746, 804
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 2 cut(s) 843, 866
HapII CCGG 6 cut(s) 256, 277, 338, 417, 491, 844
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 4 cut(s) 520, 568, 835, 856
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 8 cut(s) 14, 157, 298, 391, 441, 476, 619, 819
HpaII CCGG 6 cut(s) 256, 277, 338, 417, 491, 844
HphI GGTGA 3 cut(s) 23, 535, 943
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 5 cut(s) 262, 396, 584, 618, 732
Hpy188III TCNNGA 8 cut(s) 76, 178, 188, 220, 230, 473, 631, 916
Hpy8I GTNNAC 1 cut(s) 372
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 280, 793, 855
HpyCH4III ACNGT 3 cut(s) 11, 487, 722
HpyCH4IV ACGT 4 cut(s) 64, 240, 368, 827
HpyCH4V TGCA 7 cut(s) 107, 129, 447, 814, 831, 835, 849
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 113, 487, 646, 754, 855
HpyF3I CTNAG 4 cut(s) 29, 117, 171, 302
HpySE526I ACGT 4 cut(s) 64, 240, 368, 827
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 4 cut(s) 520, 568, 835, 856
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 669
KspI CCGCGG 1 cut(s) 746
Kzo9I GATC 8 cut(s) 43, 166, 222, 469, 525, 561, 610, 669
LguI GCTCTTC 2 cut(s) 258, 768
LmnI GCTCC 2 cut(s) 180, 232
Lsp1109I GCAGC 4 cut(s) 119, 141, 661, 790
LweI GCATC 3 cut(s) 88, 399, 858
MaeI CTAG 2 cut(s) 404, 698
MaeII ACGT 4 cut(s) 64, 240, 368, 827
MaeIII GTNAC 3 cut(s) 11, 22, 311
MalI GATC 8 cut(s) 45, 168, 224, 471, 527, 563, 612, 671
MboI GATC 8 cut(s) 43, 166, 222, 469, 525, 561, 610, 669
MboII GAAGA 8 cut(s) 17, 45, 53, 275, 445, 605, 752, 785
MfeI CAATTG 1 cut(s) 269
MflI RGATCY 3 cut(s) 43, 222, 469
MhlI GDGCHC 4 cut(s) 185, 389, 915, 938
MluCI AATT 4 cut(s) 269, 453, 545, 765
MlyI GAGTC 2 cut(s) 8, 307
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 7 cut(s) 29, 180, 302, 514, 716, 768, 922
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 3 cut(s) 249, 333, 795
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 3 cut(s) 364, 652, 745
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 6 cut(s) 256, 277, 338, 417, 491, 844
MspR9I CCNGG 4 cut(s) 278, 338, 418, 492
MunI CAATTG 1 cut(s) 269
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 6 cut(s) 107, 113, 487, 646, 754, 855
NciI CCSGG 4 cut(s) 278, 338, 418, 492
NdeII GATC 8 cut(s) 43, 166, 222, 469, 525, 561, 610, 669
NlaIII CATG 4 cut(s) 520, 568, 835, 856
NlaIV GGNNCC 2 cut(s) 234, 386
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 1 cut(s) 835
PaeI GCATGC 1 cut(s) 835
PciSI GCTCTTC 2 cut(s) 258, 768
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 6 cut(s) 157, 391, 441, 476, 619, 819
Pfl23II CGTACG 1 cut(s) 237
PkrI GCNGC 5 cut(s) 109, 131, 651, 747, 805
PleI GAGTC 2 cut(s) 8, 306
PpsI GAGTC 2 cut(s) 8, 306
Ppu21I YACGTR 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 938
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 234, 386
PspPI GGNCC 2 cut(s) 258, 864
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 3 cut(s) 43, 222, 469
PvuII CAGCTG 2 cut(s) 364, 652
RsaI GTAC 2 cut(s) 239, 607
RsaNI GTAC 2 cut(s) 238, 606
RseI CAYNNNNRTG 1 cut(s) 521
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
SacI GAGCTC 1 cut(s) 938
SacII CCGCGG 1 cut(s) 746
SapI GCTCTTC 2 cut(s) 258, 768
SaqAI TTAA 3 cut(s) 249, 333, 795
SatI GCNGC 5 cut(s) 108, 130, 650, 746, 804
Sau3AI GATC 8 cut(s) 43, 166, 222, 469, 525, 561, 610, 669
Sau96I GGNCC 2 cut(s) 258, 864
SchI GAGTC 2 cut(s) 8, 307
ScrFI CCNGG 4 cut(s) 278, 338, 418, 492
SduI GDGCHC 4 cut(s) 185, 389, 915, 938
SfaNI GCATC 3 cut(s) 88, 399, 858
SfcI CTRYAG 1 cut(s) 105
Sfr303I CCGCGG 1 cut(s) 746
SgrBI CCGCGG 1 cut(s) 746
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 3 cut(s) 623, 631, 794
SmoI CTYRAG 3 cut(s) 623, 631, 794
SnaBI TACGTA 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 403
SphI GCATGC 1 cut(s) 835
Sse9I AATT 4 cut(s) 269, 453, 545, 765
SsiI CCGC 4 cut(s) 540, 640, 743, 745
SspMI CTAG 2 cut(s) 404, 698
SstI GAGCTC 1 cut(s) 938
StyD4I CCNGG 4 cut(s) 276, 336, 416, 490
TaaI ACNGT 3 cut(s) 11, 487, 722
TaiI ACGT 4 cut(s) 67, 243, 371, 830
TaqI TCGA 5 cut(s) 84, 155, 189, 474, 576
TasI AATT 4 cut(s) 269, 453, 545, 765
TauI GCSGC 1 cut(s) 748
TfiI GAWTC 6 cut(s) 157, 391, 441, 476, 619, 819
Tru1I TTAA 3 cut(s) 249, 333, 795
Tru9I TTAA 3 cut(s) 249, 333, 795
TscAI CASTG 4 cut(s) 100, 492, 542, 725
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 4 cut(s) 107, 129, 649, 803
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 5 cut(s) 205, 798, 811, 902, 918
TspRI CASTG 4 cut(s) 100, 492, 542, 725
Vha464I CTTAAG 1 cut(s) 794
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 545
XceI RCATGY 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 2 cut(s) 404, 698
ZraI GACGTC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.