FvH4_7g29350

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001452
Physical Location & Seq
Reverse (-)
21613239 .. 21615464
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29350.t2

Sequence Viewer

Length: 1005 bp
ATGACTGATAAACCCTCCACCAGAACCCGGACGGACAAACATTGCGATGGAGTAAGGTTGTTTGGGGAACTAAGGAGATCTGGTGAAATGGAGGACAGTGCGTCTCCTACGAGAAGATGGGAGGATCTGGATACGGATATTTTGGTGAAGATTTTTCAGTCTTTTGATGTGTTTGAGTTAACTTCCGGGATAGCTCATGTGTGTAGTGGTTGGCGTTTGGCGTGCTGTGATCCTCTGCTATGGATGACGCTGGATTTGTCGATGATGAAATCTAATTTCATTAAAATTCCGTTGGAGCCGTATGTTTATGTGGATGGCCGATCTGATAAGCTGTTGACTCGTCTCTTGAAGATTTCAATGAGTCTCAGCCGGGGAAACATTACGACCTTGATCTTCCATTTCAATTTGTATGTGAGCGATGATCAGTTGACTTATACTGCTGAAAGGTCCCCAAAGCTGAAACGACTAGTTTTGCCAGCTTGGAACAGAATTAAGAAGACAGGAATCTGCAAGGCCATTTCCTGCTGGAAGGAGCTTGAATCCTTGACAATGCCTAGCATAGCGAATCCCCCATACTTCATAGACGAGATCGCAAAGAACTGCAAGAACTTCAAAGAACTAAAGATCATGGGTCCTTGTGATATCTTCTTTGCTTCAACTCTAGTTGCATATCTTCCTAATCTGAAGGTTTTAAGCCTCAGGTGCTCAATGCTCCTAAGGGAGGCTCTTATCATGATCTTGGAGGGCCTGCCGCACCTTGAAGTTCTGAATATATCACATTGCCTTCTTGTCGACGTCACTCCACCACCTGTAACTAAAAGGGTTTTAAGAGAGATTGATCCTTTTATCCTTGAGAAGGCGTCCCGACTACGCAGGTTTTTGACGTGCATGCAAGACACCTGCGTGATGTGCCAAAGGACGAAAACTGACGAGGGGATCTTGAGGTGGTACAAGTATGAAGAAGGGCTATGGCAAGAGGATGAGGTGAGCTCCCTTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

335

Amino Acids

38.53

Weight (kDa)

8.17

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 45 - 86 6.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 908
AatII GACGTC 1 cut(s) 798
Acc36I ACCTGC 2 cut(s) 864, 908
AccI GTMKAC 1 cut(s) 792
AciI CCGC 1 cut(s) 752
AclWI GGATC 4 cut(s) 132, 224, 833, 944
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 704
AcyI GRCGYC 2 cut(s) 795, 860
AfaI GTAC 1 cut(s) 950
AfiI CCNNNNNNNGG 3 cut(s) 27, 721, 856
AgsI TTSAA 7 cut(s) 349, 357, 403, 539, 613, 657, 761
AhdI GACNNNNNGTC 1 cut(s) 100
AhlI ACTAGT 1 cut(s) 466
AjiI CACGTC 1 cut(s) 885
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 6 cut(s) 194, 331, 457, 479, 535, 990
AluI AGCT 6 cut(s) 194, 331, 457, 479, 535, 990
Alw21I GWGCWC 2 cut(s) 707, 992
Alw26I GTCTC 3 cut(s) 108, 347, 368
AlwI GGATC 4 cut(s) 132, 224, 833, 944
AoxI GGCC 3 cut(s) 316, 513, 745
ApoI RAATTY 1 cut(s) 285
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AspS9I GGNCC 3 cut(s) 447, 632, 745
AsuC2I CCSGG 3 cut(s) 28, 187, 371
AsuHPI GGTGA 3 cut(s) 95, 157, 997
AvaII GGWCC 2 cut(s) 447, 632
AxyI CCTNAGG 2 cut(s) 698, 716
BanII GRGCYC 1 cut(s) 992
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 2 cut(s) 707, 992
BccI CCATC 3 cut(s) 41, 111, 308
BceAI ACGGC 1 cut(s) 283
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 3 cut(s) 28, 187, 371
BcoDI GTCTC 3 cut(s) 108, 347, 368
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 3 cut(s) 467, 555, 662
BfuAI ACCTGC 2 cut(s) 864, 908
BfuI GTATCC 1 cut(s) 124
BglII AGATCT 1 cut(s) 77
BisI GCNGC 1 cut(s) 752
BlsI GCNGC 1 cut(s) 753
Bme1390I CCNGG 3 cut(s) 28, 187, 371
Bme18I GGWCC 2 cut(s) 447, 632
BmeRI GACNNNNNGTC 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 885
BmgT120I GGNCC 3 cut(s) 447, 632, 745
BmiI GGNNCC 3 cut(s) 297, 449, 633
BmrFI CCNGG 3 cut(s) 28, 187, 371
BpiI GAAGAC 1 cut(s) 503
BplI GAGNNNNNCTC 1 cut(s) 974
BpuEI CTTGAG 2 cut(s) 872, 961
BpuMI CCSGG 3 cut(s) 28, 187, 371
BsaHI GRCGYC 2 cut(s) 795, 860
BsaJI CCNNGG 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 721, 856
Bse21I CCTNAGG 2 cut(s) 698, 716
Bse3DI GCAATG 2 cut(s) 40, 778
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 3 cut(s) 249, 319, 985
BseLI CCNNNNNNNGG 3 cut(s) 27, 721, 856
BseMI GCAATG 2 cut(s) 40, 778
BseMII CTCAG 2 cut(s) 379, 712
BshFI GGCC 3 cut(s) 318, 515, 747
BsiHKAI GWGCWC 2 cut(s) 707, 992
BsiSI CCGG 3 cut(s) 28, 186, 370
BslFI GGGAC 2 cut(s) 433, 847
BslI CCNNNNNNNGG 3 cut(s) 27, 721, 856
BsmAI GTCTC 3 cut(s) 108, 347, 368
BsmBI CGTCTC 2 cut(s) 108, 347
BsmFI GGGAC 2 cut(s) 433, 847
BsnI GGCC 3 cut(s) 318, 515, 747
Bsp1286I GDGCHC 2 cut(s) 707, 992
BspACI CCGC 1 cut(s) 752
BspANI GGCC 3 cut(s) 318, 515, 747
BspCNI CTCAG 2 cut(s) 378, 711
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 3 cut(s) 297, 449, 633
BspMI ACCTGC 2 cut(s) 864, 908
BspPI GGATC 4 cut(s) 132, 224, 833, 944
BsrDI GCAATG 2 cut(s) 40, 778
BssECI CCNNGG 1 cut(s) 370
BssNI GRCGYC 2 cut(s) 795, 860
Bst4CI ACNGT 1 cut(s) 98
BstACI GRCGYC 2 cut(s) 795, 860
BstC8I GCNNGC 4 cut(s) 223, 477, 749, 890
BstDEI CTNAG 4 cut(s) 71, 365, 698, 716
BstENI CCTNNNNNAGG 2 cut(s) 719, 854
BstF5I GGATG 3 cut(s) 249, 319, 985
BstMAI GTCTC 3 cut(s) 108, 347, 368
BstMWI GCNNNNNNNGC 2 cut(s) 702, 909
BstNSI RCATGY 1 cut(s) 892
BstSCI CCNGG 3 cut(s) 26, 185, 369
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 3 cut(s) 77, 124, 936
BstYI RGATCY 3 cut(s) 77, 124, 936
Bsu36I CCTNAGG 2 cut(s) 698, 716
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 3 cut(s) 318, 515, 747
BtgZI GCGATG 2 cut(s) 60, 432
BtrI CACGTC 1 cut(s) 885
BtsCI GGATG 3 cut(s) 249, 319, 985
BtsIMutI CAGTG 1 cut(s) 103
BveI ACCTGC 2 cut(s) 864, 908
Cac8I GCNNGC 4 cut(s) 223, 477, 749, 890
CciI TCATGA 1 cut(s) 732
Cfr13I GGNCC 3 cut(s) 447, 632, 745
CseI GACGC 3 cut(s) 90, 256, 849
Csp6I GTAC 1 cut(s) 949
CviAII CATG 4 cut(s) 197, 628, 733, 889
CviQI GTAC 1 cut(s) 949
DdeI CTNAG 4 cut(s) 71, 365, 698, 716
DriI GACNNNNNGTC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 316
Eam1105I GACNNNNNGTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 990
Eco24I GRGCYC 1 cut(s) 992
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 447, 632
Eco53kI GAGCTC 1 cut(s) 990
Eco57I CTGAAG 1 cut(s) 704
Eco81I CCTNAGG 2 cut(s) 698, 716
EcoICRI GAGCTC 1 cut(s) 990
EcoNI CCTNNNNNAGG 2 cut(s) 719, 854
EcoO109I RGGNCCY 3 cut(s) 447, 632, 745
EcoRV GATATC 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 992
Esp3I CGTCTC 2 cut(s) 108, 347
FaeI CATG 4 cut(s) 200, 631, 736, 892
FaqI GGGAC 2 cut(s) 433, 847
FatI CATG 4 cut(s) 196, 627, 732, 888
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 1 cut(s) 752
FokI GGATG 3 cut(s) 256, 326, 992
FriOI GRGCYC 1 cut(s) 992
Fsp4HI GCNGC 1 cut(s) 752
FspBI CTAG 3 cut(s) 467, 555, 662
GluI GCNGC 1 cut(s) 752
HaeIII GGCC 3 cut(s) 318, 515, 747
HapII CCGG 3 cut(s) 28, 186, 370
HgaI GACGC 3 cut(s) 90, 256, 849
Hin1I GRCGYC 2 cut(s) 795, 860
Hin1II CATG 4 cut(s) 200, 631, 736, 892
HincII GTYRAC 4 cut(s) 180, 336, 429, 793
HindII GTYRAC 4 cut(s) 180, 336, 429, 793
HinfI GANTC 5 cut(s) 337, 361, 504, 539, 565
HpaI GTTAAC 1 cut(s) 180
HpaII CCGG 3 cut(s) 28, 186, 370
HphI GGTGA 3 cut(s) 95, 157, 997
Hpy166II GTNNAC 4 cut(s) 180, 336, 429, 793
Hpy188I TCNGA 3 cut(s) 325, 684, 768
Hpy188III TCNNGA 5 cut(s) 128, 346, 733, 864, 940
Hpy8I GTNNAC 4 cut(s) 180, 336, 429, 793
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 5 cut(s) 523, 679, 794, 850, 956
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 795, 884
HpyCH4V TGCA 5 cut(s) 510, 603, 668, 888, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 702, 909
HpyF3I CTNAG 4 cut(s) 71, 365, 698, 716
HpySE526I ACGT 2 cut(s) 795, 884
Hsp92I GRCGYC 2 cut(s) 795, 860
Hsp92II CATG 4 cut(s) 200, 631, 736, 892
Ksp22I TGATCA 1 cut(s) 421
KspAI GTTAAC 1 cut(s) 180
LmnI GCTCC 4 cut(s) 295, 532, 717, 995
MaeI CTAG 3 cut(s) 467, 555, 662
MaeII ACGT 2 cut(s) 795, 884
MaeIII GTNAC 2 cut(s) 796, 811
MboII GAAGA 8 cut(s) 126, 160, 361, 385, 508, 637, 665, 971
MflI RGATCY 3 cut(s) 77, 124, 936
MhlI GDGCHC 2 cut(s) 707, 992
MluCI AATT 4 cut(s) 274, 285, 403, 489
MlyI GAGTC 2 cut(s) 331, 370
MmeI TCCRAC 1 cut(s) 273
MseI TTAA 5 cut(s) 179, 282, 492, 692, 827
MslI CAYNNNNRTG 2 cut(s) 45, 902
MspI CCGG 3 cut(s) 28, 186, 370
MspR9I CCNGG 3 cut(s) 28, 187, 371
MwoI GCNNNNNNNGC 2 cut(s) 702, 909
NciI CCSGG 3 cut(s) 28, 187, 371
NlaIII CATG 4 cut(s) 200, 631, 736, 892
NlaIV GGNNCC 3 cut(s) 297, 449, 633
NmuCI GTSAC 1 cut(s) 796
NspI RCATGY 1 cut(s) 892
OliI CACNNNNGTG 1 cut(s) 902
PaeI GCATGC 1 cut(s) 892
PagI TCATGA 1 cut(s) 732
PaqCI CACCTGC 1 cut(s) 908
PfeI GAWTC 3 cut(s) 504, 539, 565
PfoI TCCNGGA 1 cut(s) 185
PkrI GCNGC 1 cut(s) 753
PleI GAGTC 2 cut(s) 331, 369
PpsI GAGTC 2 cut(s) 331, 369
PpuMI RGGWCCY 2 cut(s) 447, 632
Psp124BI GAGCTC 1 cut(s) 992
Psp5II RGGWCCY 2 cut(s) 447, 632
PspN4I GGNNCC 3 cut(s) 297, 449, 633
PspPI GGNCC 3 cut(s) 447, 632, 745
PspPPI RGGWCCY 2 cut(s) 447, 632
PsuI RGATCY 3 cut(s) 77, 124, 936
RsaI GTAC 1 cut(s) 950
RsaNI GTAC 1 cut(s) 949
RseI CAYNNNNRTG 2 cut(s) 45, 902
SacI GAGCTC 1 cut(s) 992
SalI GTCGAC 1 cut(s) 791
SaqAI TTAA 5 cut(s) 179, 282, 492, 692, 827
SatI GCNGC 1 cut(s) 752
Sau96I GGNCC 3 cut(s) 447, 632, 745
SchI GAGTC 2 cut(s) 331, 370
ScrFI CCNGG 3 cut(s) 28, 187, 371
SduI GDGCHC 2 cut(s) 707, 992
SinI GGWCC 2 cut(s) 447, 632
SmiMI CAYNNNNRTG 2 cut(s) 45, 902
SmlI CTYRAG 2 cut(s) 851, 940
SmoI CTYRAG 2 cut(s) 851, 940
SpeI ACTAGT 1 cut(s) 466
SphI GCATGC 1 cut(s) 892
Sse9I AATT 4 cut(s) 274, 285, 403, 489
SsiI CCGC 1 cut(s) 752
SspMI CTAG 3 cut(s) 467, 555, 662
SstI GAGCTC 1 cut(s) 992
StyD4I CCNGG 3 cut(s) 26, 185, 369
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 2 cut(s) 798, 887
TaqI TCGA 2 cut(s) 260, 792
TasI AATT 4 cut(s) 274, 285, 403, 489
TauI GCSGC 1 cut(s) 754
TfiI GAWTC 3 cut(s) 504, 539, 565
Tru1I TTAA 5 cut(s) 179, 282, 492, 692, 827
Tru9I TTAA 5 cut(s) 179, 282, 492, 692, 827
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 796
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 4 cut(s) 268, 281, 568, 972
TspGWI ACGGA 3 cut(s) 47, 149, 279
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 447, 632
XagI CCTNNNNNAGG 2 cut(s) 719, 854
XapI RAATTY 1 cut(s) 285
XceI RCATGY 1 cut(s) 892
XmiI GTMKAC 1 cut(s) 792
XspI CTAG 3 cut(s) 467, 555, 662
ZraI GACGTC 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.