Rroxscaffold_4G00281460

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001452
Physical Location & Seq
Forward (+)
3765102 .. 3765604
503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00281460.1

Sequence Viewer

Length: 366 bp
ATGGAAGAAGGCTCCAACAAAAGAATAAGAATTGGTACAATGGAAGAGTACGACTCCAGACGAGGGGATGACCTGCCTAGTGACGTAGTGCGCACTTTATTTGAGTTTTTCGACGACACATCGGATCCAACTTCGGCCATTACGAGGGTTCATTGCAGTGCCGTTTGTTGTGCTTGGCGTTCGATTCTCTGTGACCCTCAGCTTTGGAACACAATTGACCTCTCCACCATGGAATCTGATTTCATCAGAATACAAATTGAGCCCTATGTTTGGATCCCCGAGGCTGAAACGACTGGTTATGCCGGTATGGAACAGGATAAGCATTGCCGGAATCCGCAAGGCTATTGCTTCATGGAAAGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

121

Amino Acids

14.02

Weight (kDa)

4.51

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 23 - 74 2.7e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 81
AciI CCGC 1 cut(s) 335
AclWI GGATC 4 cut(s) 119, 132, 268, 281
AcoI YGGCCR 1 cut(s) 135
AfaI GTAC 2 cut(s) 37, 50
AfiI CCNNNNNNNGG 3 cut(s) 63, 144, 270
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
AlwI GGATC 4 cut(s) 119, 132, 268, 281
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 278
BamHI GGATCC 2 cut(s) 124, 273
BanII GRGCYC 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 198
BceAI ACGGC 1 cut(s) 146
BfaI CTAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 278
BmiI GGNNCC 3 cut(s) 13, 126, 275
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 228, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 144, 270
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 2 cut(s) 151, 322
BseDI CCNNGG 2 cut(s) 228, 279
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 63, 144, 270
BseMI GCAATG 2 cut(s) 151, 322
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 298
BshFI GGCC 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 2 cut(s) 303, 328
BslI CCNNNNNNNGG 3 cut(s) 63, 144, 270
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 124, 273
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 3 cut(s) 13, 126, 275
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 4 cut(s) 119, 132, 268, 281
BsrDI GCAATG 2 cut(s) 151, 322
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 228, 279
BssMI GATC 2 cut(s) 124, 273
BssT1I CCWWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 127, 276
BstMBI GATC 2 cut(s) 124, 273
BstX2I RGATCY 2 cut(s) 124, 273
BstYI RGATCY 2 cut(s) 124, 273
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 163
BveI ACCTGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 302
Csp6I GTAC 2 cut(s) 36, 49
CviAII CATG 2 cut(s) 229, 352
CviJI RGCY 6 cut(s) 12, 137, 202, 262, 284, 342
CviKI_1 RGCY 6 cut(s) 12, 137, 202, 262, 284, 342
CviQI GTAC 2 cut(s) 36, 49
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 126, 275
DpnII GATC 2 cut(s) 124, 273
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 232, 355
FaiI YATR 5 cut(s) 230, 267, 300, 308, 353
FatI CATG 2 cut(s) 228, 351
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 264
FspAI RTGCGCAY 1 cut(s) 92
FspBI CTAG 1 cut(s) 78
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 1 cut(s) 137
HapII CCGG 2 cut(s) 303, 328
HhaI GCGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 232, 355
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 4 cut(s) 53, 184, 233, 331
HpaII CCGG 2 cut(s) 303, 328
Hpy188I TCNGA 3 cut(s) 124, 238, 248
Hpy188III TCNNGA 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 232, 355
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 124, 273
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 6 cut(s) 70, 86, 279, 299, 316, 341
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 80, 191
MalI GATC 2 cut(s) 126, 275
MboI GATC 2 cut(s) 124, 273
MboII GAAGA 2 cut(s) 17, 56
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 2 cut(s) 124, 273
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 3 cut(s) 30, 213, 255
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 39, 152
MnlI CCTC 5 cut(s) 56, 138, 207, 230, 274
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 2 cut(s) 303, 328
MunI CAATTG 1 cut(s) 213
NcoI CCATGG 1 cut(s) 228
NdeII GATC 2 cut(s) 124, 273
NlaIII CATG 2 cut(s) 232, 355
NlaIV GGNNCC 3 cut(s) 13, 126, 275
NmuCI GTSAC 2 cut(s) 80, 191
NsbI TGCGCA 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PfeI GAWTC 3 cut(s) 184, 233, 331
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspN4I GGNNCC 3 cut(s) 13, 126, 275
PsuI RGATCY 2 cut(s) 124, 273
RsaI GTAC 2 cut(s) 37, 50
RsaNI GTAC 2 cut(s) 36, 49
RseI CAYNNNNRTG 1 cut(s) 156
Sau3AI GATC 2 cut(s) 124, 273
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 264
SetI ASST 5 cut(s) 75, 87, 204, 222, 364
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 3 cut(s) 30, 213, 255
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 111, 182
TasI AATT 3 cut(s) 30, 213, 255
TfiI GAWTC 3 cut(s) 184, 233, 331
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 2 cut(s) 80, 191
Tsp45I GTSAC 2 cut(s) 80, 191
TspDTI ATGAA 3 cut(s) 140, 232, 340
TspRI CASTG 1 cut(s) 163
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.