RLG00000026544

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001452
Physical Location & Seq
Forward (+)
3730621 .. 3731958
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026544

Sequence Viewer

Length: 951 bp
ATGGAAGACGGTGACTCCCTCGTAACTCTGAGAAGATGGGAAGATCTAAACACCGATATACTACGTAAGATTTTCGGGACTTTCGACTACATCACTGATGCGTCTGCAGCCATTGCTCAGGTTCGTTGCAGCGCCGTTTGTATTGCTTGGCGTTCGATTCTCTGCGATCCTCAGCTCTGGAGCACTCTCGATTTGTCATGGTTGAAATCCAACTTCATCAGGATCCATCAGGAGCCGTACGTCTATGTTAATAGCCGGTCCGAAGAGCAATTGAGCCGGGTTTTGAAGGTGTCGTTGAGTCTTAGCAGAGGTAACATTACCACCTTGGTTTTTAACCCGGAGTTGTATATCAGCGACGACCAGCTGACTTCTACTGCTGAAAGGTGCCCGAATCTGAAACGACTAGTGATGCCAACCGGGGACAGAATAAAGAAGACTGGAATCTGCAAGGCAATTCAAAACTGGCAAGATCTCGAATCGCTGACAGTGCCGGGGATAATGTATCCCCCATATCTCATGGAGGTGATCTCCATCCACTGCGGTAACTTCAGGGAACTAAAGATCATGGGTCGTTTCGATGTCCGATTTGCTTCAACATTAGTTGGTACTTATCTTCCGAATCTCAAGGTCTTGAGCCTGCGGTGTTCGCAGCTGGTAAGGGAAGCTTTGATCACTATATTGGACGGCTTACCACAACTAGAAGTCCTCAATATAGCACACTGTGTGCTTCTGATTGAACCCCCGCGGCGTAATCAGCCTCTTCAAATTGTTGAAGAGCTTGATGAAGCTATTCTTGAGAAGGCTGCTCGGTTGCAGAGATTCATAACGTGCATGCAAGTAGACCGGTGCATCATGTGCCAAAGGGCCAGAAAGGATGGGGGGATTATGAAGTGGTATAAATATGAAGCAGGGCTCTGGAAACAAGATGAGGTGAGCTCTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

317

Amino Acids

36.23

Weight (kDa)

7.46

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 178 - 280 4.7e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 840
AccII CGCG 1 cut(s) 745
AciI CCGC 4 cut(s) 540, 640, 743, 745
AclWI GGATC 3 cut(s) 161, 217, 230
AcuI CTGAAG 1 cut(s) 532
AdeI CACNNNGTG 2 cut(s) 722, 724
AfaI GTAC 2 cut(s) 239, 607
AgeI ACCGGT 1 cut(s) 843
AgsI TTSAA 7 cut(s) 205, 286, 458, 594, 737, 764, 773
AhlI ACTAGT 1 cut(s) 403
AluBI AGCT 7 cut(s) 175, 364, 652, 665, 778, 788, 936
AluI AGCT 7 cut(s) 175, 364, 652, 665, 778, 788, 936
Alw21I GWGCWC 2 cut(s) 185, 938
AlwI GGATC 3 cut(s) 161, 217, 230
AoxI GGCC 1 cut(s) 864
ApeKI GCWGC 4 cut(s) 107, 129, 649, 803
AsiGI ACCGGT 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 258, 864
AsuC2I CCSGG 4 cut(s) 278, 338, 418, 492
AsuHPI GGTGA 3 cut(s) 23, 535, 943
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 389
BamHI GGATCC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 384
BanII GRGCYC 2 cut(s) 915, 938
BbsI GAAGAC 2 cut(s) 12, 440
Bbv12I GWGCWC 2 cut(s) 185, 938
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 119, 141, 661, 790
BccI CCATC 4 cut(s) 30, 234, 539, 869
BceAI ACGGC 3 cut(s) 119, 220, 700
BciVI GTATCC 1 cut(s) 513
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 4 cut(s) 278, 338, 418, 492
BcuI ACTAGT 1 cut(s) 403
BfaI CTAG 2 cut(s) 404, 698
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 135
BfuI GTATCC 1 cut(s) 513
BglII AGATCT 2 cut(s) 43, 469
BisI GCNGC 5 cut(s) 108, 130, 650, 746, 804
BlsI GCNGC 5 cut(s) 109, 131, 651, 747, 805
Bme1390I CCNGG 4 cut(s) 278, 338, 418, 492
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 258, 864
BmiI GGNNCC 3 cut(s) 224, 234, 386
BmrFI CCNGG 4 cut(s) 278, 338, 418, 492
BmsI GCATC 3 cut(s) 88, 399, 858
BpiI GAAGAC 2 cut(s) 12, 440
BplI GAGNNNNNCTC 3 cut(s) 512, 544, 920
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 2 cut(s) 117, 171
BpuEI CTTGAG 3 cut(s) 608, 652, 815
BpuMI CCSGG 4 cut(s) 278, 338, 418, 492
BsaAI YACGTR 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 530
BsaJI CCNNGG 4 cut(s) 324, 417, 491, 743
BsaWI WCCGGW 1 cut(s) 843
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse118I RCCGGY 2 cut(s) 255, 843
Bse1I ACTGG 2 cut(s) 442, 467
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 530
BseDI CCNNGG 4 cut(s) 324, 417, 491, 743
BseGI GGATG 2 cut(s) 531, 880
BseJI GATNNNNATC 1 cut(s) 530
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 20, 131, 185
BseNI ACTGG 2 cut(s) 442, 467
BseSI GKGCMC 1 cut(s) 389
BseXI GCAGC 4 cut(s) 119, 141, 661, 790
Bsh1236I CGCG 1 cut(s) 745
BshFI GGCC 1 cut(s) 866
BshNI GGYRCC 1 cut(s) 384
BshTI ACCGGT 1 cut(s) 843
BsiHKAI GWGCWC 2 cut(s) 185, 938
BsiSI CCGG 6 cut(s) 256, 277, 338, 417, 491, 844
BsiWI CGTACG 1 cut(s) 237
BslFI GGGAC 2 cut(s) 91, 434
BsmFI GGGAC 2 cut(s) 91, 434
BsnI GGCC 1 cut(s) 866
Bsp1286I GDGCHC 4 cut(s) 185, 389, 915, 938
Bsp143I GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
BspACI CCGC 4 cut(s) 540, 640, 743, 745
BspANI GGCC 1 cut(s) 866
BspCNI CTCAG 3 cut(s) 21, 130, 184
BspFNI CGCG 1 cut(s) 745
BspLI GGNNCC 3 cut(s) 224, 234, 386
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 3 cut(s) 161, 217, 230
BspQI GCTCTTC 2 cut(s) 258, 768
BspT107I GGYRCC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 255, 843
BsrI ACTGG 2 cut(s) 442, 467
BssAI RCCGGY 2 cut(s) 255, 843
BssECI CCNNGG 4 cut(s) 324, 417, 491, 743
BssMI GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 11, 487, 722
Bst6I CTCTTC 3 cut(s) 258, 765, 768
BstAPI GCANNNNNTGC 2 cut(s) 113, 855
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 638, 833
BstDEI CTNAG 4 cut(s) 29, 117, 171, 302
BstDSI CCRYGG 1 cut(s) 743
BstF5I GGATG 2 cut(s) 531, 880
BstFNI CGCG 1 cut(s) 745
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 7 cut(s) 46, 169, 225, 472, 528, 564, 672
BstMBI GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
BstMWI GCNNNNNNNGC 6 cut(s) 107, 113, 487, 646, 754, 855
BstNSI RCATGY 1 cut(s) 835
BstSCI CCNGG 4 cut(s) 276, 336, 416, 490
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 389
BstSNI TACGTA 1 cut(s) 65
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 4 cut(s) 119, 141, 661, 790
BstV2I GAAGAC 2 cut(s) 12, 440
BstX2I RGATCY 3 cut(s) 43, 222, 469
BstYI RGATCY 3 cut(s) 43, 222, 469
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 866
BtgI CCRYGG 1 cut(s) 743
BtsCI GGATG 2 cut(s) 531, 880
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 4 cut(s) 93, 492, 535, 718
Cac8I GCNNGC 2 cut(s) 638, 833
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 2 cut(s) 255, 843
Cfr13I GGNCC 2 cut(s) 258, 864
Cfr42I CCGCGG 1 cut(s) 746
CpoI CGGWCCG 1 cut(s) 258
CseI GACGC 1 cut(s) 90
Csp6I GTAC 2 cut(s) 238, 606
CspAI ACCGGT 1 cut(s) 843
CspI CGGWCCG 1 cut(s) 258
CviAII CATG 5 cut(s) 198, 517, 565, 832, 853
CviQI GTAC 2 cut(s) 238, 606
DdeI CTNAG 4 cut(s) 29, 117, 171, 302
DpnI GATC 7 cut(s) 45, 168, 224, 471, 527, 563, 671
DpnII GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
DraIII CACNNNGTG 2 cut(s) 722, 724
Eam1104I CTCTTC 3 cut(s) 258, 765, 768
EarI CTCTTC 3 cut(s) 258, 765, 768
Ecl136II GAGCTC 1 cut(s) 936
Eco105I TACGTA 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 2 cut(s) 915, 938
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 936
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 2 cut(s) 915, 938
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 5 cut(s) 201, 520, 568, 835, 856
FalI AAGNNNNNCTT 4 cut(s) 649, 681, 777, 809
FaqI GGGAC 2 cut(s) 91, 434
FatI CATG 5 cut(s) 197, 516, 564, 831, 852
FauI CCCGC 1 cut(s) 750
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 5 cut(s) 108, 130, 650, 746, 804
FokI GGATG 2 cut(s) 518, 887
FriOI GRGCYC 2 cut(s) 915, 938
Fsp4HI GCNGC 5 cut(s) 108, 130, 650, 746, 804
FspBI CTAG 2 cut(s) 404, 698
GlaI GCGC 1 cut(s) 133
GluI GCNGC 5 cut(s) 108, 130, 650, 746, 804
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 866
HapII CCGG 6 cut(s) 256, 277, 338, 417, 491, 844
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 134
Hin1II CATG 5 cut(s) 201, 520, 568, 835, 856
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 8 cut(s) 14, 157, 298, 391, 441, 476, 619, 819
HpaII CCGG 6 cut(s) 256, 277, 338, 417, 491, 844
HphI GGTGA 3 cut(s) 23, 535, 943
Hpy166II GTNNAC 1 cut(s) 841
Hpy188I TCNGA 6 cut(s) 30, 262, 396, 584, 618, 732
Hpy188III TCNNGA 9 cut(s) 76, 178, 188, 220, 230, 473, 631, 794, 916
Hpy8I GTNNAC 1 cut(s) 841
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 280, 793
HpyCH4III ACNGT 3 cut(s) 11, 487, 722
HpyCH4IV ACGT 3 cut(s) 64, 240, 827
HpyCH4V TGCA 7 cut(s) 107, 129, 447, 814, 831, 835, 849
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 113, 487, 646, 754, 855
HpyF3I CTNAG 4 cut(s) 29, 117, 171, 302
HpySE526I ACGT 3 cut(s) 64, 240, 827
Hsp92II CATG 5 cut(s) 201, 520, 568, 835, 856
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 669
KspI CCGCGG 1 cut(s) 746
Kzo9I GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
LguI GCTCTTC 2 cut(s) 258, 768
LmnI GCTCC 2 cut(s) 180, 232
Lsp1109I GCAGC 4 cut(s) 119, 141, 661, 790
LweI GCATC 3 cut(s) 88, 399, 858
MaeI CTAG 2 cut(s) 404, 698
MaeII ACGT 3 cut(s) 64, 240, 827
MaeIII GTNAC 4 cut(s) 11, 22, 311, 542
MalI GATC 7 cut(s) 45, 168, 224, 471, 527, 563, 671
MboI GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
MboII GAAGA 8 cut(s) 17, 45, 53, 275, 445, 605, 752, 785
MfeI CAATTG 1 cut(s) 269
MflI RGATCY 3 cut(s) 43, 222, 469
MhlI GDGCHC 4 cut(s) 185, 389, 915, 938
MluCI AATT 3 cut(s) 269, 453, 765
MlyI GAGTC 2 cut(s) 8, 307
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 7 cut(s) 29, 180, 302, 514, 716, 768, 922
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 2 cut(s) 249, 333
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 3 cut(s) 364, 652, 745
MspI CCGG 6 cut(s) 256, 277, 338, 417, 491, 844
MspR9I CCNGG 4 cut(s) 278, 338, 418, 492
MunI CAATTG 1 cut(s) 269
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 6 cut(s) 107, 113, 487, 646, 754, 855
NciI CCSGG 4 cut(s) 278, 338, 418, 492
NdeII GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
NlaIII CATG 5 cut(s) 201, 520, 568, 835, 856
NlaIV GGNNCC 3 cut(s) 224, 234, 386
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 1 cut(s) 835
PaeI GCATGC 1 cut(s) 835
PciSI GCTCTTC 2 cut(s) 258, 768
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 6 cut(s) 157, 391, 441, 476, 619, 819
Pfl23II CGTACG 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 843
PkrI GCNGC 5 cut(s) 109, 131, 651, 747, 805
PleI GAGTC 2 cut(s) 8, 306
PpsI GAGTC 2 cut(s) 8, 306
Ppu21I YACGTR 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 938
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 224, 234, 386
PspPI GGNCC 2 cut(s) 258, 864
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 3 cut(s) 43, 222, 469
PvuII CAGCTG 2 cut(s) 364, 652
RsaI GTAC 2 cut(s) 239, 607
RsaNI GTAC 2 cut(s) 238, 606
RseI CAYNNNNRTG 1 cut(s) 521
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
SacI GAGCTC 1 cut(s) 938
SacII CCGCGG 1 cut(s) 746
SapI GCTCTTC 2 cut(s) 258, 768
SaqAI TTAA 2 cut(s) 249, 333
SatI GCNGC 5 cut(s) 108, 130, 650, 746, 804
Sau3AI GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
Sau96I GGNCC 2 cut(s) 258, 864
SchI GAGTC 2 cut(s) 8, 307
ScrFI CCNGG 4 cut(s) 278, 338, 418, 492
SduI GDGCHC 4 cut(s) 185, 389, 915, 938
SfaNI GCATC 3 cut(s) 88, 399, 858
SfcI CTRYAG 1 cut(s) 105
Sfr303I CCGCGG 1 cut(s) 746
SgrBI CCGCGG 1 cut(s) 746
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 3 cut(s) 623, 631, 794
SmoI CTYRAG 3 cut(s) 623, 631, 794
SnaBI TACGTA 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 403
SphI GCATGC 1 cut(s) 835
Sse9I AATT 3 cut(s) 269, 453, 765
SsiI CCGC 4 cut(s) 540, 640, 743, 745
SspMI CTAG 2 cut(s) 404, 698
SstI GAGCTC 1 cut(s) 938
StyD4I CCNGG 4 cut(s) 276, 336, 416, 490
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 3 cut(s) 11, 487, 722
TaiI ACGT 3 cut(s) 67, 243, 830
TaqI TCGA 5 cut(s) 84, 155, 189, 474, 576
TasI AATT 3 cut(s) 269, 453, 765
TauI GCSGC 1 cut(s) 748
TfiI GAWTC 6 cut(s) 157, 391, 441, 476, 619, 819
Tru1I TTAA 2 cut(s) 249, 333
Tru9I TTAA 2 cut(s) 249, 333
TscAI CASTG 4 cut(s) 100, 492, 542, 725
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 4 cut(s) 107, 129, 649, 803
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 5 cut(s) 205, 798, 811, 902, 918
TspRI CASTG 4 cut(s) 100, 492, 542, 725
VpaK11BI GGWCC 1 cut(s) 258
XceI RCATGY 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 840
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 2 cut(s) 404, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.