Rh1AG418700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001452
Physical Location & Seq
Reverse (-)
64979315 .. 64979887
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG418700.1

Sequence Viewer

Length: 573 bp
ATGGAATTAGACGGTGACTCCCATATAACTCTGAGAAGATGGGAAGGCCTGCCTAGTGACATACTGCAGAAGATTCTAGTTGAGTCTGATTTTGATGACACCTCTGGTTTAACTTCTCTCATTTCTTGGCTCCATTGCGGTGCCGTTTGTAGTGCATGGCGTTCGATTCTCTCTGACCCCCAGCTTTGGAATACACTTGACTTGTCCACAATGAAATCTGATTTCATTTACATTCTTGTCGAGCCCTATGTTTATGTTTCTGAAAAGTCGGATTCGATATTGAGTTGCTTTCTGAAGAGTGCATTAAGTCTTAGCAAGGGGAACATAATCACCTTGATCTTCCATCCCAACTTGTATCTGCCTAATGATCTCTTCAATTACACTGCTGAAAGGTCCCTGAAGCTGAAACGGCTGGTTATGCCGGCATGGAACAGATTAAATAGTGATGGAATCTGCAAGGCCATTGCTTGTTGGAAAGACCTTGAATCCCTCACAATAGAAGACATTGACCACAAAATTAGCTTCTCATACCTCATCCACCAGATTTCGAACAACTGCAAGAACTTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

190

Amino Acids

21.75

Weight (kDa)

5.48

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 14 - 68 6.3e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AciI CCGC 1 cut(s) 138
AcuI CTGAAG 3 cut(s) 314, 419, 550
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 2 cut(s) 376, 485
AluBI AGCT 3 cut(s) 184, 403, 522
AluI AGCT 3 cut(s) 184, 403, 522
AoxI GGCC 2 cut(s) 46, 459
AspS9I GGNCC 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 26, 322
AsuII TTCGAA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 507
BccI CCATC 3 cut(s) 33, 351, 440
BceAI ACGGC 2 cut(s) 128, 425
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BfaI CTAG 2 cut(s) 54, 77
BfmI CTRYAG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 3 cut(s) 131, 142, 395
BpiI GAAGAC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 548
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 421
Bse3DI GCAATG 2 cut(s) 133, 462
BseGI GGATG 2 cut(s) 343, 534
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 2 cut(s) 133, 462
BseMII CTCAG 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 180
BshFI GGCC 2 cut(s) 48, 461
BshNI GGYRCC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 2 cut(s) 48, 461
Bsp119I TTCGAA 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 336, 367
BspACI CCGC 1 cut(s) 138
BspANI GGCC 2 cut(s) 48, 461
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 131, 142, 395
BspMAI CTGCAG 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 2 cut(s) 133, 462
BsrFI RCCGGY 1 cut(s) 421
BssAI RCCGGY 1 cut(s) 421
BssMI GATC 2 cut(s) 336, 367
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 290, 377
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 50, 423
BstDEI CTNAG 2 cut(s) 32, 311
BstF5I GGATG 2 cut(s) 343, 534
BstKTI GATC 2 cut(s) 339, 370
BstMBI GATC 2 cut(s) 336, 367
BstMWI GCNNNNNNNGC 2 cut(s) 409, 418
BstSFI CTRYAG 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 507
BsuRI GGCC 2 cut(s) 48, 461
BtsCI GGATG 2 cut(s) 343, 534
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 50, 423
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 393
CviAII CATG 2 cut(s) 156, 426
CviJI RGCY 8 cut(s) 48, 130, 184, 244, 403, 412, 461, 522
CviKI_1 RGCY 8 cut(s) 48, 130, 184, 244, 403, 412, 461, 522
DdeI CTNAG 2 cut(s) 32, 311
DpnI GATC 2 cut(s) 338, 369
DpnII GATC 2 cut(s) 336, 367
Eam1104I CTCTTC 2 cut(s) 290, 377
EarI CTCTTC 2 cut(s) 290, 377
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 3 cut(s) 314, 419, 550
EcoO109I RGGNCCY 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 2 cut(s) 159, 429
FaqI GGGAC 1 cut(s) 379
FatI CATG 2 cut(s) 155, 425
FokI GGATG 2 cut(s) 330, 521
FriOI GRGCYC 1 cut(s) 246
FspBI CTAG 2 cut(s) 54, 77
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 2 cut(s) 48, 461
HapII CCGG 1 cut(s) 422
Hin1II CATG 2 cut(s) 159, 429
HinfI GANTC 7 cut(s) 17, 73, 83, 166, 272, 450, 485
HpaII CCGG 1 cut(s) 422
HphI GGTGA 2 cut(s) 26, 322
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 8 cut(s) 33, 88, 175, 220, 262, 271, 294, 569
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 5 cut(s) 67, 155, 302, 456, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 418
HpyF3I CTNAG 2 cut(s) 32, 311
Hsp92II CATG 2 cut(s) 159, 429
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
Kzo9I GATC 2 cut(s) 336, 367
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 7 cut(s) 62, 90, 194, 398, 410, 435, 554
MaeI CTAG 2 cut(s) 54, 77
MaeIII GTNAC 2 cut(s) 14, 56
MalI GATC 2 cut(s) 338, 369
MboI GATC 2 cut(s) 336, 367
MboII GAAGA 6 cut(s) 48, 82, 307, 331, 364, 512
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 3 cut(s) 5, 376, 516
MlyI GAGTC 2 cut(s) 11, 92
MmeI TCCRAC 2 cut(s) 249, 452
MnlI CCTC 3 cut(s) 112, 500, 542
MroNI GCCGGC 1 cut(s) 421
MseI TTAA 3 cut(s) 110, 305, 437
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 409, 418
NaeI GCCGGC 1 cut(s) 423
NdeII GATC 2 cut(s) 336, 367
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 2 cut(s) 159, 429
NlaIV GGNNCC 3 cut(s) 131, 142, 395
NmuCI GTSAC 2 cut(s) 14, 56
NspV TTCGAA 1 cut(s) 548
PceI AGGCCT 1 cut(s) 48
PdiI GCCGGC 1 cut(s) 423
PfeI GAWTC 5 cut(s) 73, 166, 272, 450, 485
PleI GAGTC 2 cut(s) 11, 91
PpsI GAGTC 2 cut(s) 11, 91
PpuMI RGGWCCY 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 131, 142, 395
PspPI GGNCC 1 cut(s) 393
PspPPI RGGWCCY 1 cut(s) 393
PstI CTGCAG 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 3 cut(s) 110, 305, 437
Sau3AI GATC 2 cut(s) 336, 367
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 2 cut(s) 11, 92
SduI GDGCHC 1 cut(s) 246
SetI ASST 8 cut(s) 104, 186, 335, 395, 405, 483, 524, 534
SfcI CTRYAG 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 3 cut(s) 5, 376, 516
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 1 cut(s) 138
SspMI CTAG 2 cut(s) 54, 77
StuI AGGCCT 1 cut(s) 48
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 4 cut(s) 164, 240, 275, 548
TasI AATT 3 cut(s) 5, 376, 516
TfiI GAWTC 5 cut(s) 73, 166, 272, 450, 485
Tru1I TTAA 3 cut(s) 110, 305, 437
Tru9I TTAA 3 cut(s) 110, 305, 437
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 2 cut(s) 14, 56
Tsp45I GTSAC 2 cut(s) 14, 56
TspDTI ATGAA 2 cut(s) 214, 227
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 393
XspI CTAG 2 cut(s) 54, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.