Rmu_ssc0000155.1_g000019

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000155.1
OG0001452
Physical Location & Seq
Forward (+)
82988 .. 83956
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000155.1_g000019.1.cds

Sequence Viewer

Length: 969 bp
atggaagaaggctccgacaaaagaataagaattaatacaatggaagagtacgactccagacgaggggatgacctgcctagtgacgtactgcgcaatttatttgagtttttcgacgacacatcggatccaacttcggccattaccagggttcattgcagtgccgtttgtagtgcttggcgttcgattctctgtgaccctcagctttggaacacaattgacctctccaccatggaatctgatttcatcagaatacaaattgagccctatgtttgggttagtgaaaagacagattcgagattgaattgcattttgaagactgcattgagtctcagcaggagaaatataaccacccttctcttcaatctcaacctgtatgttcctgaccatctcttcacttacactgctgaaagatccccgaagctgaaacgactggttatgccggtatggaacaggataagcattgccggaatccgcaaggccattgcttcatggaaagaccttgagtcccttacaataggtaacatcaatagttacaactacgacttcctcatgaggcagatttcaaccaattgcaagaacttcagtgagttgaagttggtcggaacttggggttcctttgcttcagcactagttagatatgttccgaaactgaaagttttgagcctccggtgttcgaatctcttgaaggaggatttgatcgccatattaaatggattacaagacttggaagttctgaatatatcacattgcgttttgctaaatactcgacctagaacgaggattactcttacagagcttgatccatttattcttggcaaggcttttaggttaaggagattcataacgtgcatgaaatctgagtcgtgcgtcatgtgccaaagggccagagaagacgaggggatcatgaggtggtataggtatgaagaagggttatggaaagtagatgaggtcgactctcttgctctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

322

Amino Acids

37.35

Weight (kDa)

7.99

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 951
AciI CCGC 1 cut(s) 472
AclWI GGATC 5 cut(s) 119, 132, 405, 794, 908
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 565, 606
AfaI GTAC 2 cut(s) 50, 87
AfiI CCNNNNNNNGG 3 cut(s) 63, 144, 270
AgsI TTSAA 6 cut(s) 301, 313, 361, 564, 592, 685
AhdI GACNNNNNGTC 1 cut(s) 502
AhlI ACTAGT 1 cut(s) 628
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 3 cut(s) 202, 421, 796
AluI AGCT 3 cut(s) 202, 421, 796
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 5 cut(s) 119, 132, 405, 794, 908
AoxI GGCC 3 cut(s) 135, 477, 882
AseI ATTAAT 1 cut(s) 33
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 882
AsuII TTCGAA 1 cut(s) 674
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 320, 897
BbvCI CCTCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 393
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 1 cut(s) 941
BciT130I CCWGG 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 332
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 3 cut(s) 78, 629, 771
BfuAI ACCTGC 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 882
BmiI GGNNCC 3 cut(s) 13, 126, 613
BmrFI CCNGG 1 cut(s) 145
BpiI GAAGAC 2 cut(s) 320, 897
BplI GAGNNNNNCTC 5 cut(s) 38, 70, 769, 801, 938
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 144, 228
BsaWI WCCGGW 1 cut(s) 666
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 144, 270
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 4 cut(s) 151, 459, 480, 745
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 144, 228
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 63, 144, 270
BseMI GCAATG 4 cut(s) 151, 459, 480, 745
BseMII CTCAG 3 cut(s) 212, 343, 849
BseNI ACTGG 1 cut(s) 435
BshFI GGCC 3 cut(s) 137, 479, 884
BsiSI CCGG 3 cut(s) 440, 465, 667
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 3 cut(s) 63, 144, 270
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 3 cut(s) 137, 479, 884
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 5 cut(s) 124, 410, 696, 799, 900
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 1 cut(s) 472
BspANI GGCC 3 cut(s) 137, 479, 884
BspCNI CTCAG 3 cut(s) 211, 342, 850
BspHI TCATGA 2 cut(s) 549, 903
BspLI GGNNCC 3 cut(s) 13, 126, 613
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 5 cut(s) 119, 132, 405, 794, 908
BspT104I TTCGAA 1 cut(s) 674
BsrDI GCAATG 4 cut(s) 151, 459, 480, 745
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 144, 228
BssMI GATC 5 cut(s) 124, 410, 696, 799, 900
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 3 cut(s) 39, 362, 395
BstBI TTCGAA 1 cut(s) 674
BstDEI CTNAG 3 cut(s) 198, 329, 858
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 5 cut(s) 127, 413, 699, 802, 903
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 5 cut(s) 124, 410, 696, 799, 900
BstMWI GCNNNNNNNGC 1 cut(s) 873
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 143
BstV2I GAAGAC 2 cut(s) 320, 897
BstX2I RGATCY 2 cut(s) 124, 410
BstYI RGATCY 2 cut(s) 124, 410
BsuRI GGCC 3 cut(s) 137, 479, 884
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 2 cut(s) 163, 399
BtsIMutI CAGTG 3 cut(s) 163, 399, 589
BveI ACCTGC 1 cut(s) 81
CciI TCATGA 2 cut(s) 549, 903
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 882
CseI GACGC 1 cut(s) 856
Csp6I GTAC 2 cut(s) 49, 86
CviAII CATG 6 cut(s) 229, 489, 550, 850, 871, 904
CviQI GTAC 2 cut(s) 49, 86
DdeI CTNAG 3 cut(s) 198, 329, 858
DpnI GATC 5 cut(s) 126, 412, 698, 801, 902
DpnII GATC 5 cut(s) 124, 410, 696, 799, 900
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 3 cut(s) 39, 362, 395
Eam1105I GACNNNNNGTC 1 cut(s) 502
EarI CTCTTC 3 cut(s) 39, 362, 395
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 565, 606
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 6 cut(s) 232, 492, 553, 853, 874, 907
FaqI GGGAC 1 cut(s) 490
FatI CATG 6 cut(s) 228, 488, 549, 849, 870, 903
FblI GTMKAC 1 cut(s) 951
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 264
FspBI CTAG 3 cut(s) 78, 629, 771
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 3 cut(s) 137, 479, 884
HapII CCGG 3 cut(s) 440, 465, 667
HgaI GACGC 1 cut(s) 856
HhaI GCGC 1 cut(s) 93
Hin1II CATG 6 cut(s) 232, 492, 553, 853, 874, 907
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HpaII CCGG 3 cut(s) 440, 465, 667
Hpy166II GTNNAC 1 cut(s) 952
Hpy188I TCNGA 8 cut(s) 16, 124, 238, 248, 602, 645, 735, 859
Hpy188III TCNNGA 6 cut(s) 57, 294, 380, 550, 682, 904
Hpy8I GTNNAC 1 cut(s) 952
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 362, 679, 920
HpyCH4IV ACGT 2 cut(s) 84, 845
HpyCH4V TGCA 5 cut(s) 156, 306, 320, 573, 849
HpyF10VI GCNNNNNNNGC 1 cut(s) 873
HpyF3I CTNAG 3 cut(s) 198, 329, 858
HpySE526I ACGT 2 cut(s) 84, 845
Hsp92II CATG 6 cut(s) 232, 492, 553, 853, 874, 907
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 5 cut(s) 124, 410, 696, 799, 900
LmnI GCTCC 1 cut(s) 17
MaeI CTAG 3 cut(s) 78, 629, 771
MaeII ACGT 2 cut(s) 84, 845
MaeIII GTNAC 4 cut(s) 80, 191, 518, 530
MalI GATC 5 cut(s) 126, 412, 698, 801, 902
MboI GATC 5 cut(s) 124, 410, 696, 799, 900
MboII GAAGA 7 cut(s) 17, 56, 325, 349, 382, 902, 935
MfeI CAATTG 2 cut(s) 213, 568
MflI RGATCY 2 cut(s) 124, 410
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 6 cut(s) 30, 94, 213, 255, 301, 568
MlyI GAGTC 5 cut(s) 47, 334, 512, 869, 947
MmeI TCCRAC 3 cut(s) 39, 152, 580
MseI TTAA 3 cut(s) 33, 707, 830
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 3 cut(s) 440, 465, 667
MspR9I CCNGG 1 cut(s) 145
MunI CAATTG 2 cut(s) 213, 568
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 873
NcoI CCATGG 1 cut(s) 228
NdeII GATC 5 cut(s) 124, 410, 696, 799, 900
NlaIII CATG 6 cut(s) 232, 492, 553, 853, 874, 907
NlaIV GGNNCC 3 cut(s) 13, 126, 613
NmuCI GTSAC 2 cut(s) 80, 191
NsbI TGCGCA 1 cut(s) 92
NspV TTCGAA 1 cut(s) 674
PagI TCATGA 2 cut(s) 549, 903
PfeI GAWTC 6 cut(s) 184, 233, 290, 468, 676, 837
PleI GAGTC 5 cut(s) 47, 333, 511, 868, 947
PpsI GAGTC 5 cut(s) 47, 333, 511, 868, 947
PshBI ATTAAT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 13, 126, 613
PspPI GGNCC 1 cut(s) 882
PsrI GAACNNNNNNTAC 2 cut(s) 766, 798
PsuI RGATCY 2 cut(s) 124, 410
RsaI GTAC 2 cut(s) 50, 87
RsaNI GTAC 2 cut(s) 49, 86
RseI CAYNNNNRTG 1 cut(s) 156
SalI GTCGAC 1 cut(s) 950
SaqAI TTAA 3 cut(s) 33, 707, 830
Sau3AI GATC 5 cut(s) 124, 410, 696, 799, 900
Sau96I GGNCC 1 cut(s) 882
SchI GAGTC 5 cut(s) 47, 334, 512, 869, 947
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SpeI ACTAGT 1 cut(s) 628
Sse9I AATT 6 cut(s) 30, 94, 213, 255, 301, 568
SsiI CCGC 1 cut(s) 472
SspMI CTAG 3 cut(s) 78, 629, 771
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 2 cut(s) 87, 848
TaqI TCGA 6 cut(s) 111, 182, 293, 674, 766, 951
TasI AATT 6 cut(s) 30, 94, 213, 255, 301, 568
TfiI GAWTC 6 cut(s) 184, 233, 290, 468, 676, 837
Tru1I TTAA 3 cut(s) 33, 707, 830
Tru9I TTAA 3 cut(s) 33, 707, 830
TscAI CASTG 3 cut(s) 163, 406, 589
TseFI GTSAC 2 cut(s) 80, 191
Tsp45I GTSAC 2 cut(s) 80, 191
TspDTI ATGAA 6 cut(s) 140, 232, 477, 829, 866, 936
TspRI CASTG 3 cut(s) 163, 406, 589
VspI ATTAAT 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 951
XspI CTAG 3 cut(s) 78, 629, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.