Rroxscaffold_4G00281450

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001452
Physical Location & Seq
Forward (+)
3760530 .. 3762408
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00281450.1

Sequence Viewer

Length: 825 bp
ATGGAAGACGGTGACTCCCTCGTAACCCTGAGAAGATGGGAAGATCTAAACACCGATATACTACGTAAGATTTTCGGGACTTTCGACTACATCACTGATGCGTCTGCAGCCATTGCTCAGGTTCGTTGCAGCGCCGTTTGTATTGCTTGGCGTTCGATTCTCTGCGATCCTCAGCTCTGGAGCACTCTCGATTTGTCATGGTTGAAATCCAACTTCATCAAGATCCATCAGGAGCCGTACGTCTATGTTGATAGCCGGTCCGAAGAGCAATTGAGCCGGGTTTTGAAGGTGTCGTTGAGTCTTAGCAGAGGTAACATTACCACCTTGGTTTTTAACCCGGAGTTGTATATCAGCGACGACCAGCTGACGTCTACTGCTGAAAGGTGCCCGAATCTGAAACGACTAGTGATGCCAACCGGGGACAGAATAAAGAAGACTGGAATTTGCAAGGCAATTCAAAACTGGCAAGATCTCGAATCGCTGACAGTGCCGGGGATAATGTATCCCCCATATCTCATGGAGGTGATCTCCAACCATTGCGGTAACTTCAGGGAACTAAAGATCATGGGTCGTTTCGATGTCCGATTTGCTTCAACATTAGTTGGTACTTATCTTCCGAATCTCAAGGTCTTGAGCCTGCGGTGTTCGCAGCTGGTAAGGGAAGCTTTGATCACTATATTGGACGGCTTACCACAACTAGAAGTCCTCAATATAGCACACTGTGTGCTTCTGATTGAACCCCGCGGCGTAATCAGCCTCTTCAAATTGTTGAAGAGCTTGATGAAGCCATTCTTGAGAAGGCTGCTCGGTTGCAGAGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

274

Amino Acids

31.21

Weight (kDa)

8.55

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 18 - 65 9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 371
AccII CGCG 1 cut(s) 744
AciI CCGC 4 cut(s) 540, 640, 742, 744
AclWI GGATC 2 cut(s) 161, 217
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 368
AdeI CACNNNGTG 2 cut(s) 722, 724
AfaI GTAC 2 cut(s) 239, 607
AgsI TTSAA 7 cut(s) 205, 286, 458, 594, 737, 763, 772
AhlI ACTAGT 1 cut(s) 403
AluBI AGCT 5 cut(s) 175, 364, 652, 665, 777
AluI AGCT 5 cut(s) 175, 364, 652, 665, 777
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 2 cut(s) 161, 217
ApeKI GCWGC 4 cut(s) 107, 129, 649, 802
ApoI RAATTY 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 788
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 4 cut(s) 278, 338, 418, 492
AsuHPI GGTGA 2 cut(s) 23, 535
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 389
BanI GGYRCC 1 cut(s) 384
BbsI GAAGAC 2 cut(s) 12, 440
Bbv12I GWGCWC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 119, 141, 661, 789
BccI CCATC 2 cut(s) 30, 234
BceAI ACGGC 3 cut(s) 119, 220, 700
BciVI GTATCC 1 cut(s) 513
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 4 cut(s) 278, 338, 418, 492
BcuI ACTAGT 1 cut(s) 403
BfaI CTAG 2 cut(s) 404, 698
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 135
BfuI GTATCC 1 cut(s) 513
BglII AGATCT 2 cut(s) 43, 469
BisI GCNGC 5 cut(s) 108, 130, 650, 745, 803
BlsI GCNGC 5 cut(s) 109, 131, 651, 746, 804
Bme1390I CCNGG 4 cut(s) 278, 338, 418, 492
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 2 cut(s) 234, 386
BmrFI CCNGG 4 cut(s) 278, 338, 418, 492
BmsI GCATC 2 cut(s) 88, 399
BpiI GAAGAC 2 cut(s) 12, 440
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 2 cut(s) 117, 171
BpuEI CTTGAG 3 cut(s) 608, 652, 814
BpuMI CCSGG 4 cut(s) 278, 338, 418, 492
BsaAI YACGTR 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 4 cut(s) 324, 417, 491, 742
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 442, 467
Bse3DI GCAATG 2 cut(s) 111, 535
BseDI CCNNGG 4 cut(s) 324, 417, 491, 742
BseMI GCAATG 2 cut(s) 111, 535
BseMII CTCAG 3 cut(s) 20, 131, 185
BseNI ACTGG 2 cut(s) 442, 467
BseSI GKGCMC 1 cut(s) 389
BseXI GCAGC 4 cut(s) 119, 141, 661, 789
Bsh1236I CGCG 1 cut(s) 744
BshNI GGYRCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 5 cut(s) 256, 277, 338, 417, 491
BsiWI CGTACG 1 cut(s) 237
BslFI GGGAC 2 cut(s) 91, 434
BsmFI GGGAC 2 cut(s) 91, 434
Bsp1286I GDGCHC 2 cut(s) 185, 389
Bsp143I GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
BspACI CCGC 4 cut(s) 540, 640, 742, 744
BspCNI CTCAG 3 cut(s) 21, 130, 184
BspFNI CGCG 1 cut(s) 744
BspLI GGNNCC 2 cut(s) 234, 386
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 161, 217
BspQI GCTCTTC 2 cut(s) 258, 767
BspT107I GGYRCC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 111, 535
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 2 cut(s) 442, 467
BssAI RCCGGY 1 cut(s) 255
BssECI CCNNGG 4 cut(s) 324, 417, 491, 742
BssMI GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
BssNI GRCGYC 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 11, 487, 722
Bst6I CTCTTC 3 cut(s) 258, 764, 767
BstACI GRCGYC 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 638
BstDEI CTNAG 4 cut(s) 29, 117, 171, 302
BstDSI CCRYGG 1 cut(s) 742
BstFNI CGCG 1 cut(s) 744
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 7 cut(s) 46, 169, 225, 472, 528, 564, 672
BstMBI GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
BstMWI GCNNNNNNNGC 5 cut(s) 107, 113, 487, 646, 753
BstSCI CCNGG 4 cut(s) 276, 336, 416, 490
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 389
BstSNI TACGTA 1 cut(s) 65
BstUI CGCG 1 cut(s) 744
BstV1I GCAGC 4 cut(s) 119, 141, 661, 789
BstV2I GAAGAC 2 cut(s) 12, 440
BstX2I RGATCY 3 cut(s) 43, 222, 469
BstYI RGATCY 3 cut(s) 43, 222, 469
BsuI GTATCC 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 742
BtsIMutI CAGTG 3 cut(s) 93, 492, 718
Cac8I GCNNGC 1 cut(s) 638
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 258
Cfr42I CCGCGG 1 cut(s) 745
CpoI CGGWCCG 1 cut(s) 258
CseI GACGC 1 cut(s) 90
Csp6I GTAC 2 cut(s) 238, 606
CspI CGGWCCG 1 cut(s) 258
CviAII CATG 3 cut(s) 198, 517, 565
CviQI GTAC 2 cut(s) 238, 606
DdeI CTNAG 4 cut(s) 29, 117, 171, 302
DpnI GATC 7 cut(s) 45, 168, 224, 471, 527, 563, 671
DpnII GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
DraIII CACNNNGTG 2 cut(s) 722, 724
Eam1104I CTCTTC 3 cut(s) 258, 764, 767
EarI CTCTTC 3 cut(s) 258, 764, 767
Eco105I TACGTA 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 3 cut(s) 201, 520, 568
FalI AAGNNNNNCTT 4 cut(s) 649, 681, 776, 808
FaqI GGGAC 2 cut(s) 91, 434
FatI CATG 3 cut(s) 197, 516, 564
FauI CCCGC 1 cut(s) 749
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 5 cut(s) 108, 130, 650, 745, 803
Fsp4HI GCNGC 5 cut(s) 108, 130, 650, 745, 803
FspBI CTAG 2 cut(s) 404, 698
GlaI GCGC 1 cut(s) 133
GluI GCNGC 5 cut(s) 108, 130, 650, 745, 803
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 135
HapII CCGG 5 cut(s) 256, 277, 338, 417, 491
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 3 cut(s) 201, 520, 568
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 7 cut(s) 14, 157, 298, 391, 476, 619, 818
HpaII CCGG 5 cut(s) 256, 277, 338, 417, 491
HphI GGTGA 2 cut(s) 23, 535
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 5 cut(s) 262, 396, 584, 618, 732
Hpy188III TCNNGA 8 cut(s) 76, 178, 188, 220, 230, 473, 631, 793
Hpy8I GTNNAC 1 cut(s) 372
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 280, 792
HpyCH4III ACNGT 3 cut(s) 11, 487, 722
HpyCH4IV ACGT 3 cut(s) 64, 240, 368
HpyCH4V TGCA 4 cut(s) 107, 129, 447, 813
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 113, 487, 646, 753
HpyF3I CTNAG 4 cut(s) 29, 117, 171, 302
HpySE526I ACGT 3 cut(s) 64, 240, 368
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 3 cut(s) 201, 520, 568
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 669
KspI CCGCGG 1 cut(s) 745
Kzo9I GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
LguI GCTCTTC 2 cut(s) 258, 767
LmnI GCTCC 2 cut(s) 180, 232
Lsp1109I GCAGC 4 cut(s) 119, 141, 661, 789
LweI GCATC 2 cut(s) 88, 399
MaeI CTAG 2 cut(s) 404, 698
MaeII ACGT 3 cut(s) 64, 240, 368
MaeIII GTNAC 4 cut(s) 11, 22, 311, 542
MalI GATC 7 cut(s) 45, 168, 224, 471, 527, 563, 671
MboI GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
MboII GAAGA 8 cut(s) 17, 45, 53, 275, 445, 605, 751, 784
MfeI CAATTG 1 cut(s) 269
MflI RGATCY 3 cut(s) 43, 222, 469
MhlI GDGCHC 2 cut(s) 185, 389
MluCI AATT 4 cut(s) 269, 441, 453, 764
MlyI GAGTC 2 cut(s) 8, 307
MmeI TCCRAC 2 cut(s) 234, 555
MnlI CCTC 6 cut(s) 29, 180, 302, 514, 716, 767
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 3 cut(s) 364, 652, 744
MspI CCGG 5 cut(s) 256, 277, 338, 417, 491
MspR9I CCNGG 4 cut(s) 278, 338, 418, 492
MunI CAATTG 1 cut(s) 269
MvnI CGCG 1 cut(s) 744
MwoI GCNNNNNNNGC 5 cut(s) 107, 113, 487, 646, 753
NciI CCSGG 4 cut(s) 278, 338, 418, 492
NdeII GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
NlaIII CATG 3 cut(s) 201, 520, 568
NlaIV GGNNCC 2 cut(s) 234, 386
NmuCI GTSAC 1 cut(s) 11
PciSI GCTCTTC 2 cut(s) 258, 767
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 5 cut(s) 157, 391, 476, 619, 818
Pfl23II CGTACG 1 cut(s) 237
PkrI GCNGC 5 cut(s) 109, 131, 651, 746, 804
PleI GAGTC 2 cut(s) 8, 306
PpsI GAGTC 2 cut(s) 8, 306
Ppu21I YACGTR 1 cut(s) 65
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 234, 386
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 3 cut(s) 43, 222, 469
PvuII CAGCTG 2 cut(s) 364, 652
RsaI GTAC 2 cut(s) 239, 607
RsaNI GTAC 2 cut(s) 238, 606
RseI CAYNNNNRTG 1 cut(s) 521
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
SacII CCGCGG 1 cut(s) 745
SapI GCTCTTC 2 cut(s) 258, 767
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 5 cut(s) 108, 130, 650, 745, 803
Sau3AI GATC 7 cut(s) 43, 166, 222, 469, 525, 561, 669
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 2 cut(s) 8, 307
ScrFI CCNGG 4 cut(s) 278, 338, 418, 492
SduI GDGCHC 2 cut(s) 185, 389
SfaNI GCATC 2 cut(s) 88, 399
SfcI CTRYAG 1 cut(s) 105
Sfr303I CCGCGG 1 cut(s) 745
SgrBI CCGCGG 1 cut(s) 745
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 3 cut(s) 623, 631, 793
SmoI CTYRAG 3 cut(s) 623, 631, 793
SnaBI TACGTA 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 403
Sse9I AATT 4 cut(s) 269, 441, 453, 764
SsiI CCGC 4 cut(s) 540, 640, 742, 744
SspMI CTAG 2 cut(s) 404, 698
StyD4I CCNGG 4 cut(s) 276, 336, 416, 490
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 3 cut(s) 11, 487, 722
TaiI ACGT 3 cut(s) 67, 243, 371
TaqI TCGA 5 cut(s) 84, 155, 189, 474, 576
TasI AATT 4 cut(s) 269, 441, 453, 764
TauI GCSGC 1 cut(s) 747
TfiI GAWTC 5 cut(s) 157, 391, 476, 619, 818
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 3 cut(s) 100, 492, 725
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 4 cut(s) 107, 129, 649, 802
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 3 cut(s) 205, 797, 810
TspRI CASTG 3 cut(s) 100, 492, 725
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 2 cut(s) 404, 698
ZraI GACGTC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.