Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001452

Physical Location & Seq

Genomic Coordinates Reverse (-)

28562153 .. 28565400

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G293200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGACTGATAAACCCTCCTCAAGAACCAGAGCACAAAAACATTGTGACGGGGTAAGGTTGTTTGGAGAAGTTTGGAAAGCTGGTGAAATGGAGGACAGTGAGTCCCTTGTGAGAAGATGGGAGGACCTGGATACTGACATATTGGTGAAGATCTTTCAGTCTTTTGACATCTATCAGTTAACTTCGGGCATTGCGCACATCTGTAGTGCATGGCGCTTGGCTTGCTGTGATCCTCTGCTTTGGAAAACGCTTGATTTGTCAATGATGAAATCTAACTACATCAAAATCCCATTAGAACCTTATGTTTATGTGGATGGACGGTCTGATAAGGACTTGACTCGTGTTTTGAAGACTTCCTTGAATCTCAGCCGGGGAAACTTGATGACTTTGATTTTCCATTTCAACTTGTATGTGAGTGATGATCTGTTAACTTATACTGCTGAAAGGTGTCCACGGCTGAAGAGACTAGTGATGCCAGCTTGGAACAGAATTAAAAAAACTGGAATCTGCAAGGCCATTCGATGCTGGAAAGATCTTGAATCTCTGACAATGCCTAGCATAGCGAATCCCCCATATCTTATGGAGGAGATTGCCAAGAACTGCAAAAATTTCAATGAACTAAAGATCATGGGGCCTTGCGACATCTTCTTTGCTTCGACTCTAGTTGCGTATCTTCCAAAACTGAAGGTTTTAAGCCTCCGGTGCTCAATGCTCTTAAAGGACGCGTTAATCATTATCTTGGATGGCCTACAACACCTAGAAGTTCTCAATATCTCACATTGCCTTGTAATTGATACCACTCCGCCTCGTGCACCCAGGAGACTTCTTAAAGAACTCGATCCAGTTATTCTCGAGAAGGCGTCTCGTTTACGGATGTTCTTAACTTGCATGCAAGACTCGTGCATCATGTGCCAAAGGACCAAAAATGACGAGGGACTCATGAGGTGGTATAAGTATGAAGAAGGGCTATGGCTAGAAGATGAGGTGAGGTCCCTTGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

335

Amino Acids

38.76

Weight (kDa)

8.45

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48880 AT3G48880 AT3G48880
fragaria_vesca	FvH4_7g29321 FvH4_7g29340 FvH4_7g29350 FvH4_7g29350
malus_domestica	MD01G1199600.v1.1 MD06G1077200.v1.1 MD07G1267400.v1.1 MD09G1056800.v1.1 MD14G1098500.v1.1
prunus_persica	Prupe.2G293100_v2.0.a1 Prupe.2G293200_v2.0.a1
pyrus_communis	pycom01g20960 pycom07g24510 pycom111g04760
rosa_chinensis	RchiOBHm_Chr1g0377061 RchiOBHm_Chr1g0377071 RchiOBHm_Chr1g0377081 RchiOBHm_Chr1g0377091 RchiOBHm_Chr1g0377111
rosa_laevigata	RLG00000026542 RLG00000026544 RLG00000026545 RLG00000026546
rosa_multiflora	Rmu_ssc0000155.1_g000019
rosa_roxburghii	Rroxscaffold_4G00281440 Rroxscaffold_4G00281450 Rroxscaffold_4G00281460
rosa_rugosa	Rorug01G0401300 Rorug01G0401300
rosa_samantha	Rh1AG418500 Rh1AG418600 Rh1AG418700 Rh1AG418800 Rh1AG418900 Rh1BG377600 Rh1BG377700 Rh1BG377800 Rh1BG378000 Rh1CG391600 Rh1CG391700 Rh1CG391800 Rh1CG392000 Rh1DG408300 Rh1DG408400 Rh1DG408500 Rh1DG408700
rosa_wichuraiana	Rw1G036720 Rw1G036730 Rw1G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	195
AccII	CGCG	1 cut(s)	725
AciI	CCGC	1 cut(s)	803
AclWI	GGATC	2 cut(s)	224, 833
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	2 cut(s)	479, 704
AcyI	GRCGYC	1 cut(s)	860
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	5 cut(s)	349, 361, 403, 539, 613
AhdI	GACNNNNNGTC	1 cut(s)	100
AhlI	ACTAGT	1 cut(s)	466
AjnI	CCWGG	2 cut(s)	126, 815
AluBI	AGCT	2 cut(s)	80, 479
AluI	AGCT	2 cut(s)	80, 479
Alw21I	GWGCWC	3 cut(s)	34, 707, 814
Alw26I	GTCTC	3 cut(s)	457, 814, 867
Alw44I	GTGCAC	1 cut(s)	810
AlwI	GGATC	2 cut(s)	224, 833
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	3 cut(s)	513, 632, 745
ApaLI	GTGCAC	1 cut(s)	810
ApoI	RAATTY	1 cut(s)	607
ArsI	GACNNNNNNTTYG	4 cut(s)	328, 360, 632, 664
AspLEI	GCGC	2 cut(s)	196, 216
AspS9I	GGNCC	4 cut(s)	124, 632, 918, 990
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	95, 157, 997
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	3 cut(s)	124, 918, 990
BaeGI	GKGCMC	1 cut(s)	814
BauI	CACGAG	3 cut(s)	339, 807, 898
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	3 cut(s)	34, 707, 814
BccI	CCATC	3 cut(s)	111, 308, 737
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	128, 817
BciVI	GTATCC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	457, 814, 867
BcuI	ACTAGT	1 cut(s)	466
BfaI	CTAG	5 cut(s)	467, 555, 662, 758, 974
BfmI	CTRYAG	1 cut(s)	202
BfoI	RGCGCY	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	124
BglII	AGATCT	2 cut(s)	150, 532
Bme1390I	CCNGG	3 cut(s)	128, 371, 817
Bme18I	GGWCC	3 cut(s)	124, 918, 990
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	4 cut(s)	124, 632, 918, 990
BmiI	GGNNCC	2 cut(s)	633, 992
BmrFI	CCNGG	3 cut(s)	128, 371, 817
BmsI	GCATC	3 cut(s)	462, 512, 912
BpiI	GAAGAC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	4
BpuMI	CCSGG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	370, 452, 815
BsaWI	WCCGGW	1 cut(s)	699
Bse1I	ACTGG	2 cut(s)	505, 842
Bse3DI	GCAATG	2 cut(s)	189, 778
BseBI	CCWGG	2 cut(s)	128, 817
BseDI	CCNNGG	3 cut(s)	370, 452, 815
BseGI	GGATG	3 cut(s)	319, 748, 879
BseMI	GCAATG	2 cut(s)	189, 778
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	2 cut(s)	505, 842
BseRI	GAGGAG	2 cut(s)	7, 599
BseSI	GKGCMC	1 cut(s)	814
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	3 cut(s)	515, 634, 747
BsiHKAI	GWGCWC	3 cut(s)	34, 707, 814
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	370, 700
BslFI	GGGAC	3 cut(s)	88, 948, 976
BsmAI	GTCTC	3 cut(s)	457, 814, 867
BsmBI	CGTCTC	1 cut(s)	867
BsmFI	GGGAC	3 cut(s)	88, 948, 976
BsnI	GGCC	3 cut(s)	515, 634, 747
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	3 cut(s)	34, 707, 814
Bsp143I	GATC	6 cut(s)	150, 229, 421, 532, 624, 838
BspACI	CCGC	1 cut(s)	803
BspANI	GGCC	3 cut(s)	515, 634, 747
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	725
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	2 cut(s)	633, 992
BspPI	GGATC	2 cut(s)	224, 833
BsrDI	GCAATG	2 cut(s)	189, 778
BsrI	ACTGG	2 cut(s)	505, 842
BssECI	CCNNGG	3 cut(s)	370, 452, 815
BssMI	GATC	6 cut(s)	150, 229, 421, 532, 624, 838
BssNI	GRCGYC	1 cut(s)	860
BssSI	CACGAG	3 cut(s)	339, 807, 898
Bst2BI	CACGAG	3 cut(s)	339, 807, 898
Bst2UI	CCWGG	2 cut(s)	128, 817
Bst4CI	ACNGT	2 cut(s)	98, 321
Bst6I	CTCTTC	1 cut(s)	455
BstACI	GRCGYC	1 cut(s)	860
BstAPI	GCANNNNNTGC	1 cut(s)	909
BstC8I	GCNNGC	3 cut(s)	223, 477, 890
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	319, 748, 879
BstFNI	CGCG	1 cut(s)	725
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	196, 216
BstKTI	GATC	6 cut(s)	153, 232, 424, 535, 627, 841
BstMAI	GTCTC	3 cut(s)	457, 814, 867
BstMBI	GATC	6 cut(s)	150, 229, 421, 532, 624, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 702, 909
BstNI	CCWGG	2 cut(s)	128, 817
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	3 cut(s)	126, 369, 815
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	1 cut(s)	725
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	2 cut(s)	150, 532
BstYI	RGATCY	2 cut(s)	150, 532
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	515, 634, 747
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	319, 748, 879
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	223, 477, 890
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	2 cut(s)	196, 216
Cfr13I	GGNCC	4 cut(s)	124, 632, 918, 990
CseI	GACGC	2 cut(s)	731, 849
CviAII	CATG	5 cut(s)	210, 628, 889, 907, 940
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	6 cut(s)	152, 231, 423, 534, 626, 840
DpnII	GATC	6 cut(s)	150, 229, 421, 532, 624, 838
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	455
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	455
EciI	GGCGGA	1 cut(s)	792
Eco47I	GGWCC	3 cut(s)	124, 918, 990
Eco57I	CTGAAG	2 cut(s)	479, 704
Eco88I	CYCGRG	1 cut(s)	851
EcoO109I	RGGNCCY	3 cut(s)	124, 632, 990
EcoRII	CCWGG	2 cut(s)	126, 815
Esp3I	CGTCTC	1 cut(s)	867
FaeI	CATG	5 cut(s)	213, 631, 892, 910, 943
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	3 cut(s)	88, 948, 976
FatI	CATG	5 cut(s)	209, 627, 888, 906, 939
FokI	GGATG	3 cut(s)	326, 755, 886
FspBI	CTAG	5 cut(s)	467, 555, 662, 758, 974
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	2 cut(s)	195, 215
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	3 cut(s)	515, 634, 747
HapII	CCGG	2 cut(s)	370, 700
HgaI	GACGC	2 cut(s)	731, 849
HhaI	GCGC	2 cut(s)	196, 216
Hin1I	GRCGYC	1 cut(s)	860
Hin1II	CATG	5 cut(s)	213, 631, 892, 910, 943
Hin6I	GCGC	2 cut(s)	194, 214
HinP1I	GCGC	2 cut(s)	194, 214
HincII	GTYRAC	2 cut(s)	180, 429
HindII	GTYRAC	2 cut(s)	180, 429
HinfI	GANTC	9 cut(s)	101, 337, 361, 504, 539, 565, 658, 896, 936
HpaI	GTTAAC	2 cut(s)	180, 429
HpaII	CCGG	2 cut(s)	370, 700
HphI	GGTGA	3 cut(s)	95, 157, 997
Hpy166II	GTNNAC	5 cut(s)	180, 429, 452, 812, 869
Hpy188I	TCNGA	2 cut(s)	325, 546
Hpy188III	TCNNGA	5 cut(s)	21, 536, 851, 853, 940
Hpy8I	GTNNAC	5 cut(s)	180, 429, 452, 812, 869
HpyAV	CCTTC	3 cut(s)	679, 850, 956
HpyCH4III	ACNGT	2 cut(s)	98, 321
HpyCH4V	TGCA	7 cut(s)	209, 510, 603, 812, 888, 892, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 702, 909
HpyF3I	CTNAG	1 cut(s)	365
Hsp92I	GRCGYC	1 cut(s)	860
Hsp92II	CATG	5 cut(s)	213, 631, 892, 910, 943
HspAI	GCGC	2 cut(s)	194, 214
KspAI	GTTAAC	2 cut(s)	180, 429
Kzo9I	GATC	6 cut(s)	150, 229, 421, 532, 624, 838
LweI	GCATC	3 cut(s)	462, 512, 912
MaeI	CTAG	5 cut(s)	467, 555, 662, 758, 974
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	6 cut(s)	152, 231, 423, 534, 626, 840
MboI	GATC	6 cut(s)	150, 229, 421, 532, 624, 838
MboII	GAAGA	8 cut(s)	126, 160, 361, 472, 637, 665, 971, 989
MflI	RGATCY	2 cut(s)	150, 532
MhlI	GDGCHC	3 cut(s)	34, 707, 814
MluCI	AATT	3 cut(s)	489, 607, 789
MluI	ACGCGT	1 cut(s)	723
MlyI	GAGTC	5 cut(s)	110, 331, 652, 890, 930
MseI	TTAA	8 cut(s)	179, 428, 492, 692, 716, 728, 828, 881
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	2 cut(s)	370, 700
MspR9I	CCNGG	3 cut(s)	128, 371, 817
MvaI	CCWGG	2 cut(s)	128, 817
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	3 cut(s)	222, 702, 909
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	6 cut(s)	150, 229, 421, 532, 624, 838
NlaIII	CATG	5 cut(s)	213, 631, 892, 910, 943
NlaIV	GGNNCC	2 cut(s)	633, 992
NmuCI	GTSAC	1 cut(s)	44
NsbI	TGCGCA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	892
PaeI	GCATGC	1 cut(s)	892
PaeR7I	CTCGAG	1 cut(s)	851
PagI	TCATGA	1 cut(s)	939
PfeI	GAWTC	4 cut(s)	361, 504, 539, 565
PleI	GAGTC	5 cut(s)	109, 331, 652, 890, 930
PpsI	GAGTC	5 cut(s)	109, 331, 652, 890, 930
PpuMI	RGGWCCY	2 cut(s)	124, 990
Psp5II	RGGWCCY	2 cut(s)	124, 990
Psp6I	CCWGG	2 cut(s)	126, 815
PspGI	CCWGG	2 cut(s)	126, 815
PspN4I	GGNNCC	2 cut(s)	633, 992
PspPI	GGNCC	4 cut(s)	124, 632, 918, 990
PspPPI	RGGWCCY	2 cut(s)	124, 990
PsuI	RGATCY	2 cut(s)	150, 532
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	8 cut(s)	179, 428, 492, 692, 716, 728, 828, 881
Sau3AI	GATC	6 cut(s)	150, 229, 421, 532, 624, 838
Sau96I	GGNCC	4 cut(s)	124, 632, 918, 990
SchI	GAGTC	5 cut(s)	110, 331, 652, 890, 930
ScrFI	CCNGG	3 cut(s)	128, 371, 817
SduI	GDGCHC	3 cut(s)	34, 707, 814
SfaNI	GCATC	3 cut(s)	462, 512, 912
SfcI	CTRYAG	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	851
SinI	GGWCC	3 cut(s)	124, 918, 990
SlaI	CTCGAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	19, 851
SmoI	CTYRAG	2 cut(s)	19, 851
SpeI	ACTAGT	1 cut(s)	466
SphI	GCATGC	1 cut(s)	892
Sse9I	AATT	3 cut(s)	489, 607, 789
SsiI	CCGC	1 cut(s)	803
SspMI	CTAG	5 cut(s)	467, 555, 662, 758, 974
StyD4I	CCNGG	3 cut(s)	126, 369, 815
TaaI	ACNGT	2 cut(s)	98, 321
TaqI	TCGA	4 cut(s)	520, 656, 837, 852
TasI	AATT	3 cut(s)	489, 607, 789
TfiI	GAWTC	4 cut(s)	361, 504, 539, 565
Tru1I	TTAA	8 cut(s)	179, 428, 492, 692, 716, 728, 828, 881
Tru9I	TTAA	8 cut(s)	179, 428, 492, 692, 716, 728, 828, 881
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	281, 630, 972
TspGWI	ACGGA	1 cut(s)	886
TspRI	CASTG	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	810
VpaK11BI	GGWCC	3 cut(s)	124, 918, 990
XapI	RAATTY	1 cut(s)	607
XceI	RCATGY	1 cut(s)	892
XhoI	CTCGAG	1 cut(s)	851
XspI	CTAG	5 cut(s)	467, 555, 662, 758, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.