Rh1BG377600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001452
Physical Location & Seq
Reverse (-)
50725330 .. 50727101
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG377600.1

Sequence Viewer

Length: 726 bp
ATGGAAGAAGGCTCCAACAAAAGAATAAGAATTAGTACAATGGAAGAGTACGACTCCAGACGAGGGGATGACCTGCCTAGTGACGTAGTGCGCAATTTATTTAAGTTTTTCGACGACACATCGGATCCAACTTCGGCCATTACAAGGGTTCATTGCAGTGCCGTTTGTTGTGCTTGGCGTTCGATTCTCTGTGACCCTCAGCTTTTGAACACAATTGACCTCTCCACCATGGAATCTGATTTCATCAGAATACAAATTGAGCCCTATGTTTGGGTTAGTGAAAAGACAGATTCGAGATTGAATTGCATTTTGAAGACTGCATTGAGTCTCAGCAGGAGAAATATAACCACCCTTCTCTTCAATCTCAACCTGTATGTTCCTGACCATCTCTTCACTTACACTGCTGAAAGATCCCCGAAGCTGAAACGACTGGTTATGCCGGTATGGAACAGAATAAGCATTGCTGGAATCCGCAAGGCCATTGCTTCATGGAAAGACCTTGAGTCCCTTACAATAGGTAACATCAATAGTTACAACTACGACTTCCTCATGAGGCAGATTTCAACCAATTGCAAGAACTTCAGTGAGTTGAAGTTGGTCGGAACTTGCGATTTCTTTGCTTCAGCACTAGTTAGATATGTTCCGAAACTGAAAGTTTTGAGCCTCCGGTGCTCGAATCTCTTGAAGGAGGATTTGATCGCCATATTAAATGGATTACAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

241

Amino Acids

27.66

Weight (kDa)

8.39

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 81
AciI CCGC 1 cut(s) 472
AclWI GGATC 3 cut(s) 119, 132, 405
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 565, 606
AfaI GTAC 2 cut(s) 37, 50
AfiI CCNNNNNNNGG 3 cut(s) 63, 144, 270
AgsI TTSAA 7 cut(s) 208, 301, 313, 361, 564, 592, 685
AhdI GACNNNNNGTC 1 cut(s) 502
AhlI ACTAGT 1 cut(s) 628
AluBI AGCT 2 cut(s) 202, 421
AluI AGCT 2 cut(s) 202, 421
Alw21I GWGCWC 1 cut(s) 674
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 3 cut(s) 119, 132, 405
AoxI GGCC 2 cut(s) 135, 477
AspLEI GCGC 1 cut(s) 93
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 674
BbvCI CCTCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 393
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BcoDI GTCTC 1 cut(s) 332
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 3 cut(s) 78, 629, 724
BfuAI ACCTGC 1 cut(s) 81
BmeRI GACNNNNNGTC 1 cut(s) 502
BmiI GGNNCC 2 cut(s) 13, 126
BpiI GAAGAC 1 cut(s) 320
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 666
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 144, 270
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 3 cut(s) 151, 459, 480
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 63, 144, 270
BseMI GCAATG 3 cut(s) 151, 459, 480
BseMII CTCAG 2 cut(s) 212, 343
BseNI ACTGG 1 cut(s) 435
BshFI GGCC 2 cut(s) 137, 479
BsiHKAI GWGCWC 1 cut(s) 674
BsiSI CCGG 2 cut(s) 440, 667
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 3 cut(s) 63, 144, 270
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 2 cut(s) 137, 479
Bsp1286I GDGCHC 2 cut(s) 264, 674
Bsp143I GATC 3 cut(s) 124, 410, 696
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 1 cut(s) 472
BspANI GGCC 2 cut(s) 137, 479
BspCNI CTCAG 2 cut(s) 211, 342
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 13, 126
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 3 cut(s) 119, 132, 405
BsrDI GCAATG 3 cut(s) 151, 459, 480
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 124, 410, 696
BssT1I CCWWGG 1 cut(s) 228
Bst6I CTCTTC 3 cut(s) 39, 362, 395
BstDEI CTNAG 2 cut(s) 198, 329
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 3 cut(s) 127, 413, 699
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 3 cut(s) 124, 410, 696
BstMWI GCNNNNNNNGC 1 cut(s) 669
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 2 cut(s) 124, 410
BstYI RGATCY 2 cut(s) 124, 410
BsuRI GGCC 2 cut(s) 137, 479
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 2 cut(s) 163, 399
BtsIMutI CAGTG 3 cut(s) 163, 399, 589
BveI ACCTGC 1 cut(s) 81
CciI TCATGA 1 cut(s) 549
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 439
Csp6I GTAC 2 cut(s) 36, 49
CviAII CATG 3 cut(s) 229, 489, 550
CviJI RGCY 7 cut(s) 12, 137, 202, 262, 421, 479, 663
CviKI_1 RGCY 7 cut(s) 12, 137, 202, 262, 421, 479, 663
CviQI GTAC 2 cut(s) 36, 49
DdeI CTNAG 2 cut(s) 198, 329
DpnI GATC 3 cut(s) 126, 412, 698
DpnII GATC 3 cut(s) 124, 410, 696
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 3 cut(s) 39, 362, 395
Eam1105I GACNNNNNGTC 1 cut(s) 502
EarI CTCTTC 3 cut(s) 39, 362, 395
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 565, 606
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 3 cut(s) 232, 492, 553
FaqI GGGAC 1 cut(s) 490
FatI CATG 3 cut(s) 228, 488, 549
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 264
FspBI CTAG 3 cut(s) 78, 629, 724
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 2 cut(s) 137, 479
HapII CCGG 2 cut(s) 440, 667
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 232, 492, 553
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 8 cut(s) 53, 184, 233, 290, 325, 468, 503, 676
HpaII CCGG 2 cut(s) 440, 667
Hpy188I TCNGA 5 cut(s) 124, 238, 248, 602, 645
Hpy188III TCNNGA 5 cut(s) 57, 294, 380, 550, 682
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 362, 679
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 156, 306, 320, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 669
HpyF3I CTNAG 2 cut(s) 198, 329
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 232, 492, 553
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 124, 410, 696
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 9 cut(s) 70, 86, 319, 383, 393, 416, 450, 453, 680
MaeI CTAG 3 cut(s) 78, 629, 724
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 4 cut(s) 80, 191, 518, 530
MalI GATC 3 cut(s) 126, 412, 698
MboI GATC 3 cut(s) 124, 410, 696
MboII GAAGA 5 cut(s) 17, 56, 325, 349, 382
MfeI CAATTG 2 cut(s) 213, 568
MflI RGATCY 2 cut(s) 124, 410
MhlI GDGCHC 2 cut(s) 264, 674
MluCI AATT 6 cut(s) 30, 94, 213, 255, 301, 568
MlyI GAGTC 3 cut(s) 47, 334, 512
MmeI TCCRAC 3 cut(s) 39, 152, 580
MnlI CCTC 7 cut(s) 56, 207, 230, 546, 557, 674, 682
MseI TTAA 2 cut(s) 102, 707
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 2 cut(s) 440, 667
MunI CAATTG 2 cut(s) 213, 568
MwoI GCNNNNNNNGC 1 cut(s) 669
NcoI CCATGG 1 cut(s) 228
NdeII GATC 3 cut(s) 124, 410, 696
NlaIII CATG 3 cut(s) 232, 492, 553
NlaIV GGNNCC 2 cut(s) 13, 126
NmuCI GTSAC 2 cut(s) 80, 191
NsbI TGCGCA 1 cut(s) 92
PagI TCATGA 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PfeI GAWTC 5 cut(s) 184, 233, 290, 468, 676
PleI GAGTC 3 cut(s) 47, 333, 511
PpsI GAGTC 3 cut(s) 47, 333, 511
PspN4I GGNNCC 2 cut(s) 13, 126
PsuI RGATCY 2 cut(s) 124, 410
RsaI GTAC 2 cut(s) 37, 50
RsaNI GTAC 2 cut(s) 36, 49
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 102, 707
Sau3AI GATC 3 cut(s) 124, 410, 696
SchI GAGTC 3 cut(s) 47, 334, 512
SduI GDGCHC 2 cut(s) 264, 674
SetI ASST 8 cut(s) 75, 87, 204, 222, 372, 423, 501, 520
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SpeI ACTAGT 1 cut(s) 628
Sse9I AATT 6 cut(s) 30, 94, 213, 255, 301, 568
SsiI CCGC 1 cut(s) 472
SspMI CTAG 3 cut(s) 78, 629, 724
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 111, 182, 293, 674
TasI AATT 6 cut(s) 30, 94, 213, 255, 301, 568
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 5 cut(s) 184, 233, 290, 468, 676
Tru1I TTAA 2 cut(s) 102, 707
Tru9I TTAA 2 cut(s) 102, 707
TscAI CASTG 3 cut(s) 163, 406, 589
TseFI GTSAC 2 cut(s) 80, 191
Tsp45I GTSAC 2 cut(s) 80, 191
TspDTI ATGAA 3 cut(s) 140, 232, 477
TspRI CASTG 3 cut(s) 163, 406, 589
XspI CTAG 3 cut(s) 78, 629, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.