AT3G48880

F-box LRR-repeat protein At3g48880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001452
Physical Location & Seq
Forward (+)
18126788 .. 18129251
2464 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48880.3

Sequence Viewer

Length: 930 bp
ATGGAAGAAGAGTATGAGAGTCGTCGATTGAGGAGATGGGAAGAGTTGGACACTGACATCTTAGTAAGAATTTTCCAGAAGTTTAGCGTCTTTGAGTTGACTTCGGGATTAGCTCATGTTTGTAGAGGATGGAGAGCTGCTTGTTGCGATCCGATTCTTTGGAAGACGGTGGATTTGTCAAACATGAGATCTAGTTTCATCAAGATCCCATTAGAGCCTTATGTCTATGTGGAACGCCGATCTGATGAGGCCCTAACCCGCATCCTGAAACTCTCCATGAACCTTAGCGGAGGAAGCACGAGGACCTTGATTTTTCATTTCAACTTGTTCTTGAGTGATGATCAGCTTACTTACACCGCAGAAAGGTGTCCAGGGTTGAGACGGGTCGTCCTACCGGCTTGGAACAGAATAAAGAAGACTGGTATATGCAAAGCGATAAGAATCTGGAAAGATCTAGAGTCACTAACAATGCCAAGCATCGCAAACCCGCCTTATCTCTTAACAGAAATTGCCAAGAACTGCAAGAATTTTAAAGAGCTGAAGATCATGGGTCCATTCGAGGTCTTCTTTGCAAACACGCTCATCACTTGCCTCCCAAACATCAAAACACTCAGCATCAGATGCTCGGCGATAAAGCGGGAAGCACTGATGAAAATCCTTGACGGATTACCAAGCCTTGAAGTGCTCAACATATCACACTCTCACCTAGTGGAGTACAGCGGTTGGCAGCCTCAGCAGAAGGTGATTGTTAGAGAGCTCGATAAGACGATAATGGAGAAAACAGCAAGGCTAAAGAAATTCTTGACTTGCATGGATCACAAGACGTGTGTGATGTGTCAGAGGACTGAAAACGATGAAGGGATTGTGAGATGGTACAAGTATGAGGAAGGAGACTGGAAGGTTGATGAAGTGAGTTCTCTTCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

309

Amino Acids

36.06

Weight (kDa)

8.79

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 18 - 59 4.2e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 259, 288, 357, 488, 637, 720
AclWI GGATC 3 cut(s) 143, 199, 822
AcsI RAATTY 3 cut(s) 69, 526, 797
AcuI CTGAAG 1 cut(s) 560
AdeI CACNNNGTG 1 cut(s) 709
AfaI GTAC 2 cut(s) 716, 875
AfiI CCNNNNNNNGG 1 cut(s) 363
AflIII ACRYGT 1 cut(s) 824
AgsI TTSAA 2 cut(s) 322, 680
AhdI GACNNNNNGTC 1 cut(s) 386
AjiI CACGTC 1 cut(s) 825
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 5 cut(s) 113, 137, 346, 538, 757
AluI AGCT 5 cut(s) 113, 137, 346, 538, 757
Alw21I GWGCWC 2 cut(s) 687, 759
Alw26I GTCTC 2 cut(s) 373, 885
AlwI GGATC 3 cut(s) 143, 199, 822
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 137, 727
ApoI RAATTY 3 cut(s) 69, 526, 797
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
AspS9I GGNCC 3 cut(s) 250, 303, 551
AsuHPI GGTGA 2 cut(s) 695, 754
AvaII GGWCC 2 cut(s) 303, 551
BanII GRGCYC 1 cut(s) 759
BauI CACGAG 1 cut(s) 298
BbsI GAAGAC 3 cut(s) 170, 422, 556
Bbv12I GWGCWC 2 cut(s) 687, 759
BbvCI CCTCAGC 1 cut(s) 732
BbvI GCAGC 2 cut(s) 124, 739
BccI CCATC 3 cut(s) 30, 123, 864
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 373, 885
BfaI CTAG 3 cut(s) 192, 455, 707
BglII AGATCT 2 cut(s) 188, 451
BisI GCNGC 2 cut(s) 138, 728
BlsI GCNGC 2 cut(s) 139, 729
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 2 cut(s) 303, 551
BmeRI GACNNNNNGTC 1 cut(s) 386
BmgBI CACGTC 1 cut(s) 825
BmgT120I GGNCC 3 cut(s) 250, 303, 551
BmiI GGNNCC 1 cut(s) 552
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 4 cut(s) 270, 486, 611, 624
BpiI GAAGAC 3 cut(s) 170, 422, 556
Bpu10I CCTNAGC 2 cut(s) 284, 732
BpuEI CTTGAG 1 cut(s) 352
BsaBI GATNNNNATC 2 cut(s) 440, 653
BsaJI CCNNGG 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 2 cut(s) 424, 899
Bse8I GATNNNNATC 2 cut(s) 440, 653
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 2 cut(s) 134, 261
BseJI GATNNNNATC 2 cut(s) 440, 653
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 625, 746
BseNI ACTGG 2 cut(s) 424, 899
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 124, 739
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 687, 759
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 2 cut(s) 373, 885
BsmBI CGTCTC 1 cut(s) 373
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 687, 759
Bsp143I GATC 8 cut(s) 148, 188, 204, 239, 340, 451, 543, 814
BspACI CCGC 6 cut(s) 259, 288, 357, 488, 637, 720
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 2 cut(s) 624, 745
BspLI GGNNCC 1 cut(s) 552
BspPI GGATC 3 cut(s) 143, 199, 822
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 2 cut(s) 424, 899
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 8 cut(s) 148, 188, 204, 239, 340, 451, 543, 814
BssSI CACGAG 1 cut(s) 298
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 3 cut(s) 3, 36, 924
BstAPI GCANNNNNTGC 1 cut(s) 621
BstDEI CTNAG 4 cut(s) 61, 284, 611, 732
BstF5I GGATG 2 cut(s) 134, 261
BstKTI GATC 8 cut(s) 151, 191, 207, 242, 343, 454, 546, 817
BstMAI GTCTC 2 cut(s) 373, 885
BstMBI GATC 8 cut(s) 148, 188, 204, 239, 340, 451, 543, 814
BstMWI GCNNNNNNNGC 3 cut(s) 294, 621, 733
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 124, 739
BstV2I GAAGAC 3 cut(s) 170, 422, 556
BstX2I RGATCY 3 cut(s) 188, 204, 451
BstYI RGATCY 3 cut(s) 188, 204, 451
BsuRI GGCC 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 463
BtrI CACGTC 1 cut(s) 825
BtsCI GGATG 2 cut(s) 134, 261
BtsIMutI CAGTG 2 cut(s) 51, 644
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 3 cut(s) 250, 303, 551
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 715, 874
CviAII CATG 5 cut(s) 116, 184, 277, 547, 811
CviQI GTAC 2 cut(s) 715, 874
DdeI CTNAG 4 cut(s) 61, 284, 611, 732
DpnI GATC 8 cut(s) 150, 190, 206, 241, 342, 453, 545, 816
DpnII GATC 8 cut(s) 148, 188, 204, 239, 340, 451, 543, 814
DraI TTTAAA 1 cut(s) 532
DraIII CACNNNGTG 1 cut(s) 709
DriI GACNNNNNGTC 1 cut(s) 386
Eam1104I CTCTTC 3 cut(s) 3, 36, 924
Eam1105I GACNNNNNGTC 1 cut(s) 386
EarI CTCTTC 3 cut(s) 3, 36, 924
Ecl136II GAGCTC 1 cut(s) 757
Eco24I GRGCYC 1 cut(s) 759
Eco47I GGWCC 2 cut(s) 303, 551
Eco53kI GAGCTC 1 cut(s) 757
Eco57I CTGAAG 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 757
EcoO109I RGGNCCY 2 cut(s) 250, 303
EcoRII CCWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 759
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 5 cut(s) 119, 187, 280, 550, 814
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FatI CATG 5 cut(s) 115, 183, 276, 546, 810
FauI CCCGC 3 cut(s) 266, 495, 630
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 138, 728
FokI GGATG 2 cut(s) 141, 248
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 2 cut(s) 138, 728
FspBI CTAG 3 cut(s) 192, 455, 707
GluI GCNGC 2 cut(s) 138, 728
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 395
HgaI GACGC 1 cut(s) 76
Hin1II CATG 5 cut(s) 119, 187, 280, 550, 814
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 4 cut(s) 19, 154, 441, 458
HpaII CCGG 1 cut(s) 395
HphI GGTGA 2 cut(s) 695, 754
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 4 cut(s) 153, 244, 620, 840
Hpy188III TCNNGA 8 cut(s) 76, 105, 202, 265, 331, 445, 455, 802
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 733, 851, 881, 892
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 824
HpyCH4V TGCA 4 cut(s) 429, 522, 572, 810
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 621, 733
HpyF3I CTNAG 4 cut(s) 61, 284, 611, 732
HpySE526I ACGT 1 cut(s) 824
Hsp92II CATG 5 cut(s) 119, 187, 280, 550, 814
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 8 cut(s) 148, 188, 204, 239, 340, 451, 543, 814
LpnPI CCDG 8 cut(s) 89, 278, 357, 384, 405, 408, 430, 880
Lsp1109I GCAGC 2 cut(s) 124, 739
LweI GCATC 4 cut(s) 270, 486, 611, 624
MaeI CTAG 3 cut(s) 192, 455, 707
MaeII ACGT 1 cut(s) 824
MaeIII GTNAC 1 cut(s) 459
MalI GATC 8 cut(s) 150, 190, 206, 241, 342, 453, 545, 816
MboI GATC 8 cut(s) 148, 188, 204, 239, 340, 451, 543, 814
MboII GAAGA 8 cut(s) 17, 20, 53, 175, 427, 553, 556, 911
MflI RGATCY 3 cut(s) 188, 204, 451
MhlI GDGCHC 2 cut(s) 687, 759
MluCI AATT 4 cut(s) 69, 507, 526, 797
MlyI GAGTC 2 cut(s) 28, 467
MmeI TCCRAC 1 cut(s) 27
MseI TTAA 2 cut(s) 500, 531
MspA1I CMGCKG 1 cut(s) 720
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 294, 621, 733
NdeII GATC 8 cut(s) 148, 188, 204, 239, 340, 451, 543, 814
NlaIII CATG 5 cut(s) 119, 187, 280, 550, 814
NlaIV GGNNCC 1 cut(s) 552
NmeAIII GCCGAG 1 cut(s) 605
NmuCI GTSAC 1 cut(s) 459
PfeI GAWTC 2 cut(s) 154, 441
PkrI GCNGC 2 cut(s) 139, 729
PleI GAGTC 2 cut(s) 27, 466
PpsI GAGTC 2 cut(s) 27, 466
PpuMI RGGWCCY 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 759
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 3 cut(s) 250, 303, 551
PspPPI RGGWCCY 1 cut(s) 303
PsuI RGATCY 3 cut(s) 188, 204, 451
RsaI GTAC 2 cut(s) 716, 875
RsaNI GTAC 2 cut(s) 715, 874
SacI GAGCTC 1 cut(s) 759
SaqAI TTAA 2 cut(s) 500, 531
SatI GCNGC 2 cut(s) 138, 728
Sau3AI GATC 8 cut(s) 148, 188, 204, 239, 340, 451, 543, 814
Sau96I GGNCC 3 cut(s) 250, 303, 551
SchI GAGTC 2 cut(s) 28, 467
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 687, 759
SfaNI GCATC 4 cut(s) 270, 486, 611, 624
SinI GGWCC 2 cut(s) 303, 551
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 4 cut(s) 69, 507, 526, 797
SsiI CCGC 6 cut(s) 259, 288, 357, 488, 637, 720
SspMI CTAG 3 cut(s) 192, 455, 707
SstI GAGCTC 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 827
TaqI TCGA 3 cut(s) 25, 558, 759
TasI AATT 4 cut(s) 69, 507, 526, 797
TatI WGTACW 1 cut(s) 714
TfiI GAWTC 2 cut(s) 154, 441
Tru1I TTAA 2 cut(s) 500, 531
Tru9I TTAA 2 cut(s) 500, 531
TscAI CASTG 2 cut(s) 58, 651
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 2 cut(s) 137, 727
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 7 cut(s) 187, 293, 305, 665, 870, 911, 921
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 2 cut(s) 58, 651
VpaK11BI GGWCC 2 cut(s) 303, 551
XapI RAATTY 3 cut(s) 69, 526, 797
XbaI TCTAGA 1 cut(s) 454
XspI CTAG 3 cut(s) 192, 455, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.