FvH4_7g29321

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001452
Physical Location & Seq
Reverse (-)
21604981 .. 21605745
765 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29321.t1

Sequence Viewer

Length: 765 bp
ATGAAATCTAATTTCATCGACACCCGTGGCCATCCCTATGTTTATGTTACTGAAAAGTCGGATTTGATATTGAATTGCTTTCTGAAGAGTGCAACAAGTCATAGCAAGGGGTGCACAACCCGCTTGATTTTGCATCCCAACTTGTACCTGCCTAATGATCTCTTCACTTACGCTGCTGAAAGATCCCCGAAGCTGAAAAGACTGGTGATGCCGGCATGGAACAGAATAGATAAAGATGGAATCCGCATGGCCATTGCTTGTTGGAAAGACCTTGAGTCCCTCACAATAGAGTACATTAGCGACGGGATCTTTTCATATCTCATCCACGAGATTTCAAACAACTGCAAGAATTTCAGAGAGCTGAAGTTGATGACAGCTTCTGACTCTCAGATAACTTCAATAGTGAATGCTAGTCTAAAGCTGAAAGTTTTGAGCCTCCGATGCTCGAATGTCTTACAGGAGCATTTGACTGCTATATTGGATCGTTTTTGTGATCTGGAAGTTCTTAATATATCACATTGCCGTGTGATGGAAGCTCTACGTCCAGATCGACCAGATGGAAGAAGGGTCCTTTCAGAACTTGATCCATTGATTCTTGAAAAAGTTTCTAGGTTGAAAAAGTTGAAAAAGTTTATGACTTGCATGCCATTTGATGGTTGGTGCATCATGTGCGATAGGGCCAGAAACGACGAGGGGTACATGAAGTGGTACAAATATGAACCAGAGCTATGGAAACAAGATGAGGTCGATTCCCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

255

Amino Acids

29.55

Weight (kDa)

8.46

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 653
AciI CCGC 2 cut(s) 121, 244
AclWI GGATC 4 cut(s) 177, 314, 489, 578
AcoI YGGCCR 2 cut(s) 28, 249
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 2 cut(s) 104, 383
AfaI GTAC 4 cut(s) 146, 293, 698, 710
AfiI CCNNNNNNNGG 2 cut(s) 529, 653
AgsI TTSAA 6 cut(s) 73, 336, 399, 599, 616, 625
AhdI GACNNNNNGTC 1 cut(s) 274
AluBI AGCT 6 cut(s) 193, 361, 377, 421, 536, 727
AluI AGCT 6 cut(s) 193, 361, 377, 421, 536, 727
Alw21I GWGCWC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 112
AlwI GGATC 4 cut(s) 177, 314, 489, 578
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 3 cut(s) 28, 249, 678
ApaLI GTGCAC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 568, 678
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 568
BaeGI GKGCMC 1 cut(s) 116
BalI TGGCCA 2 cut(s) 30, 251
BauI CACGAG 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 160
BccI CCATC 5 cut(s) 39, 230, 523, 551, 647
BceAI ACGGC 1 cut(s) 507
BcgI CGANNNNNNTGC 1 cut(s) 737
BfaI CTAG 2 cut(s) 411, 609
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 568
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 568, 678
BmiI GGNNCC 1 cut(s) 569
BmsI GCATC 4 cut(s) 142, 198, 431, 672
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 653
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 207
Bse3DI GCAATG 2 cut(s) 252, 517
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 3 cut(s) 31, 133, 321
BseLI CCNNNNNNNGG 2 cut(s) 529, 653
BseMI GCAATG 2 cut(s) 252, 517
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 160
BshFI GGCC 3 cut(s) 30, 251, 680
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 529, 653
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 3 cut(s) 30, 251, 680
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 7 cut(s) 157, 182, 306, 481, 493, 547, 583
BspACI CCGC 2 cut(s) 121, 244
BspANI GGCC 3 cut(s) 30, 251, 680
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 569
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 4 cut(s) 177, 314, 489, 578
BsrDI GCAATG 2 cut(s) 252, 517
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 7 cut(s) 157, 182, 306, 481, 493, 547, 583
BssSI CACGAG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 326
Bst6I CTCTTC 2 cut(s) 80, 167
BstAPI GCANNNNNTGC 2 cut(s) 111, 669
BstC8I GCNNGC 2 cut(s) 213, 644
BstDEI CTNAG 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 3 cut(s) 31, 133, 321
BstKTI GATC 7 cut(s) 160, 185, 309, 484, 496, 550, 586
BstMBI GATC 7 cut(s) 157, 182, 306, 481, 493, 547, 583
BstMWI GCNNNNNNNGC 4 cut(s) 111, 120, 441, 669
BstNSI RCATGY 1 cut(s) 646
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 2 cut(s) 182, 306
BstXI CCANNNNNNTGG 1 cut(s) 729
BstYI RGATCY 2 cut(s) 182, 306
BsuRI GGCC 3 cut(s) 30, 251, 680
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 3 cut(s) 31, 133, 321
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 213, 644
CaiI CAGNNNCTG 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 568, 678
Csp6I GTAC 4 cut(s) 145, 292, 697, 709
CviAII CATG 5 cut(s) 216, 247, 643, 667, 700
CviQI GTAC 4 cut(s) 145, 292, 697, 709
DdeI CTNAG 1 cut(s) 387
DpnI GATC 7 cut(s) 159, 184, 308, 483, 495, 549, 585
DpnII GATC 7 cut(s) 157, 182, 306, 481, 493, 547, 583
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 2 cut(s) 28, 249
Eam1104I CTCTTC 2 cut(s) 80, 167
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 2 cut(s) 80, 167
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 2 cut(s) 104, 383
EcoO109I RGGNCCY 1 cut(s) 568
FaeI CATG 5 cut(s) 219, 250, 646, 670, 703
FaqI GGGAC 1 cut(s) 262
FatI CATG 5 cut(s) 215, 246, 642, 666, 699
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 3 cut(s) 18, 120, 308
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 2 cut(s) 411, 609
GluI GCNGC 1 cut(s) 174
HaeIII GGCC 3 cut(s) 30, 251, 680
HapII CCGG 1 cut(s) 212
Hin1II CATG 5 cut(s) 219, 250, 646, 670, 703
HinfI GANTC 5 cut(s) 240, 275, 383, 592, 749
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 7 cut(s) 61, 84, 356, 382, 390, 440, 577
Hpy188III TCNNGA 3 cut(s) 497, 545, 596
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 2 cut(s) 305, 692
HpyAV CCTTC 1 cut(s) 558
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 6 cut(s) 92, 114, 133, 345, 642, 663
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 120, 441, 669
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 5 cut(s) 219, 250, 646, 670, 703
KroI GCCGGC 1 cut(s) 211
KroNI GCCGGC 1 cut(s) 213
Kzo9I GATC 7 cut(s) 157, 182, 306, 481, 493, 547, 583
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 9 cut(s) 161, 188, 225, 443, 482, 558, 567, 694, 735
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 4 cut(s) 142, 198, 431, 672
MaeI CTAG 2 cut(s) 411, 609
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 1 cut(s) 46
MalI GATC 7 cut(s) 159, 184, 308, 483, 495, 549, 585
MboI GATC 7 cut(s) 157, 182, 306, 481, 493, 547, 583
MboII GAAGA 3 cut(s) 97, 154, 573
MflI RGATCY 2 cut(s) 182, 306
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 2 cut(s) 30, 251
MluCI AATT 3 cut(s) 10, 73, 349
MluNI TGGCCA 2 cut(s) 30, 251
MlyI GAGTC 2 cut(s) 284, 377
MmeI TCCRAC 2 cut(s) 39, 242
MnlI CCTC 4 cut(s) 290, 446, 685, 736
Mox20I TGGCCA 2 cut(s) 30, 251
MroNI GCCGGC 1 cut(s) 211
MscI TGGCCA 2 cut(s) 30, 251
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 2 cut(s) 36, 522
Msp20I TGGCCA 2 cut(s) 30, 251
MspI CCGG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 412
MwoI GCNNNNNNNGC 4 cut(s) 111, 120, 441, 669
NaeI GCCGGC 1 cut(s) 213
NdeII GATC 7 cut(s) 157, 182, 306, 481, 493, 547, 583
NgoMIV GCCGGC 1 cut(s) 211
NlaIII CATG 5 cut(s) 219, 250, 646, 670, 703
NlaIV GGNNCC 1 cut(s) 569
NspI RCATGY 1 cut(s) 646
PaeI GCATGC 1 cut(s) 646
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PctI GAATGC 1 cut(s) 412
PdiI GCCGGC 1 cut(s) 213
PfeI GAWTC 3 cut(s) 240, 592, 749
PflMI CCANNNNNTGG 1 cut(s) 653
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 2 cut(s) 283, 377
PpsI GAGTC 2 cut(s) 283, 377
PpuMI RGGWCCY 1 cut(s) 568
Psp5II RGGWCCY 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 569
PspPI GGNCC 2 cut(s) 568, 678
PspPPI RGGWCCY 1 cut(s) 568
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 182, 306
RsaI GTAC 4 cut(s) 146, 293, 698, 710
RsaNI GTAC 4 cut(s) 145, 292, 697, 709
RseI CAYNNNNRTG 2 cut(s) 36, 522
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 7 cut(s) 157, 182, 306, 481, 493, 547, 583
Sau96I GGNCC 2 cut(s) 568, 678
SchI GAGTC 2 cut(s) 284, 377
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 4 cut(s) 142, 198, 431, 672
SinI GGWCC 1 cut(s) 568
SmiMI CAYNNNNRTG 2 cut(s) 36, 522
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SphI GCATGC 1 cut(s) 646
Sse9I AATT 3 cut(s) 10, 73, 349
SsiI CCGC 2 cut(s) 121, 244
SspMI CTAG 2 cut(s) 411, 609
TaiI ACGT 1 cut(s) 544
TaqI TCGA 4 cut(s) 18, 446, 550, 747
TasI AATT 3 cut(s) 10, 73, 349
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 3 cut(s) 240, 592, 749
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 5 cut(s) 4, 17, 303, 716, 732
Van91I CCANNNNNTGG 1 cut(s) 653
VneI GTGCAC 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 1 cut(s) 349
XceI RCATGY 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 654
XspI CTAG 2 cut(s) 411, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.