MD14G1098500.v1.1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0001452
Physical Location & Seq
Forward (+)
15054678 .. 15057271
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1098500.v1.1.491

Sequence Viewer

Length: 168 bp
ATGCAATATTTGGAAGTTGTAAATGTGTCCCACTGCACCTTTCTAGAGGATTCTGAGTATTCCGGCTACTCTTATATATGCGAACAACTTGGGGAGTCAATCATTGCGCAAGCCTCACAGCTCAAGGAGTTTCTTGTGTGTCCGGGGCAGCTCTGTGATAAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

56

Amino Acids

6.21

Weight (kDa)

4.16

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 108
AluBI AGCT 2 cut(s) 121, 151
AluI AGCT 2 cut(s) 121, 151
ApeKI GCWGC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 144
BbvI GCAGC 1 cut(s) 160
BcnI CCSGG 1 cut(s) 144
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 19
BsiSI CCGG 2 cut(s) 63, 143
BslFI GGGAC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 1 cut(s) 109
CviJI RGCY 4 cut(s) 66, 113, 121, 151
CviKI_1 RGCY 4 cut(s) 66, 113, 121, 151
DdeI CTNAG 1 cut(s) 54
FaiI YATR 3 cut(s) 75, 77, 79
FaqI GGGAC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 44
FspI TGCGCA 1 cut(s) 108
GlaI GCGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 149
HapII CCGG 2 cut(s) 63, 143
HhaI GCGC 1 cut(s) 109
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 2 cut(s) 50, 95
HpaII CCGG 2 cut(s) 63, 143
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 4, 36
HpyF3I CTNAG 1 cut(s) 54
HspAI GCGC 1 cut(s) 107
LpnPI CCDG 2 cut(s) 76, 156
Lsp1109I GCAGC 1 cut(s) 160
MaeI CTAG 1 cut(s) 44
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 40, 124
MspI CCGG 2 cut(s) 63, 143
MspR9I CCNGG 1 cut(s) 144
NciI CCSGG 1 cut(s) 144
NsbI TGCGCA 1 cut(s) 108
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
SatI GCNGC 1 cut(s) 149
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 144
SetI ASST 3 cut(s) 41, 123, 153
SgeI CNNG 8 cut(s) 56, 75, 101, 122, 136, 146, 155, 156
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SspI AATATT 1 cut(s) 8
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 142
TfiI GAWTC 1 cut(s) 50
TscAI CASTG 1 cut(s) 38
TseI GCWGC 1 cut(s) 148
TspRI CASTG 1 cut(s) 38
XbaI TCTAGA 1 cut(s) 43
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.