Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001452

Physical Location & Seq

Genomic Coordinates Reverse (-)

19194791 .. 19195782

Gene Structure 992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1077200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGACTACAATATCCTTGTGAGGATATTTATGACCTTGAATTTTCCGGATGTGATATTTGTTTCTTTCGTTTGTAAATCCTGGAACGCAGCTTGCTGTGATCCAATCCTTTGGGAAACACTTGACCTGACTCTGCTCAAGTTTAACATCTGTAATACTCCTCGAAGATTGACTACTTGGTCTGATAATAAATCAAGCGAAAGATTACTAACCCCAAGGCTCAAACAACTGGTTCTACCAACCTGGAACCTGATGACATTGACTGGATTTGAAACAGCTGTCAGGAATTGGCTAGTTGGAAGCTACTGCAACATCTCTCAGCTTAAAGTTATGTGCCCTTCTAAGTTTGACTTAGTATGCGCGAGGGCCATTGTTGCCTACAATCCCAAGCTCAAGATCTTAAGTCTGCAGTGCACAACGGTGCACAAGAAAACTTTGGTTTTTATAATGAGCGAAATGGAGGAGTTGGAAGTGCTGAATGTGTCTCATTGCACATTTATAGATGACTTTGAGCGTCCCAAATACTCTTATAGATTCGAAAAACCTGGTGAGTCTATCGTTGCACAAGCCTCGCGGCTCAAGGAGTTTCTTGTGTGTCCGAGACAACTGTGTGATATGTGTGCTGGTGGAGTAGTTGATGATGAAGAGGTGTCCATATGGCATAGATTTGAAAAGGAAATTTGGCGTAAGGATAAGGTAAGTTCGCTTTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

239

Amino Acids

27.68

Weight (kDa)

7.94

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	3 - 39	1.1e-06	F-box domain
F-box-like	PF12937	5 - 43	5.4e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48880 AT3G48880 AT3G48880
fragaria_vesca	FvH4_7g29321 FvH4_7g29340 FvH4_7g29350 FvH4_7g29350
malus_domestica	MD01G1199600.v1.1 MD06G1077200.v1.1 MD07G1267400.v1.1 MD09G1056800.v1.1 MD14G1098500.v1.1
prunus_persica	Prupe.2G293100_v2.0.a1 Prupe.2G293200_v2.0.a1
pyrus_communis	pycom01g20960 pycom07g24510 pycom111g04760
rosa_chinensis	RchiOBHm_Chr1g0377061 RchiOBHm_Chr1g0377071 RchiOBHm_Chr1g0377081 RchiOBHm_Chr1g0377091 RchiOBHm_Chr1g0377111
rosa_laevigata	RLG00000026542 RLG00000026544 RLG00000026545 RLG00000026546
rosa_multiflora	Rmu_ssc0000155.1_g000019
rosa_roxburghii	Rroxscaffold_4G00281440 Rroxscaffold_4G00281450 Rroxscaffold_4G00281460
rosa_rugosa	Rorug01G0401300 Rorug01G0401300
rosa_samantha	Rh1AG418500 Rh1AG418600 Rh1AG418700 Rh1AG418800 Rh1AG418900 Rh1BG377600 Rh1BG377700 Rh1BG377800 Rh1BG378000 Rh1CG391600 Rh1CG391700 Rh1CG391800 Rh1CG392000 Rh1DG408300 Rh1DG408400 Rh1DG408500 Rh1DG408700
rosa_wichuraiana	Rw1G036720 Rw1G036730 Rw1G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
AasI	GACNNNNNNGTC	1 cut(s)	178
AccII	CGCG	2 cut(s)	362, 574
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	574
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	40, 678
AflII	CTTAAG	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	40, 272, 671
AjnI	CCWGG	3 cut(s)	80, 242, 544
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	5 cut(s)	92, 278, 303, 322, 391
AluI	AGCT	5 cut(s)	92, 278, 303, 322, 391
Alw21I	GWGCWC	2 cut(s)	416, 426
Alw26I	GTCTC	2 cut(s)	489, 595
Alw44I	GTGCAC	2 cut(s)	412, 422
AlwI	GGATC	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	1 cut(s)	366
ApaLI	GTGCAC	2 cut(s)	412, 422
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	40, 678
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	537
BaeGI	GKGCMC	3 cut(s)	338, 416, 426
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
Bbv12I	GWGCWC	2 cut(s)	416, 426
BbvI	GCAGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	552, 586
BciT130I	CCWGG	3 cut(s)	82, 244, 546
BcoDI	GTCTC	2 cut(s)	489, 595
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	407
BfrI	CTTAAG	1 cut(s)	400
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	2 cut(s)	90, 575
BlsI	GCNGC	2 cut(s)	91, 576
Bme1390I	CCNGG	3 cut(s)	82, 244, 546
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	3 cut(s)	82, 244, 546
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	3 cut(s)	122, 377, 563
BsaJI	CCNNGG	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	234, 268
Bse3DI	GCAATG	1 cut(s)	487
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	3 cut(s)	82, 244, 546
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	234, 268
BseRI	GAGGAG	2 cut(s)	150, 476
BseSI	GKGCMC	3 cut(s)	338, 416, 426
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	362, 574
BshFI	GGCC	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	416, 426
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	501
BsmAI	GTCTC	2 cut(s)	489, 595
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	3 cut(s)	338, 416, 426
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	100, 396
BspACI	CCGC	1 cut(s)	574
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	331
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	2 cut(s)	362, 574
BspLI	GGNNCC	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	411
BspPI	GGATC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	537
BspTI	CTTAAG	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	234, 268
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	100, 396
BssT1I	CCWWGG	1 cut(s)	215
Bst2UI	CCWGG	3 cut(s)	82, 244, 546
Bst4CI	ACNGT	2 cut(s)	421, 609
Bst6I	CTCTTC	1 cut(s)	639
BstAFI	CTTAAG	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	318, 342, 352
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	2 cut(s)	362, 574
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	2 cut(s)	103, 399
BstMAI	GTCTC	2 cut(s)	489, 595
BstMBI	GATC	2 cut(s)	100, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	3 cut(s)	82, 244, 546
BstSCI	CCNGG	3 cut(s)	80, 242, 544
BstSFI	CTRYAG	1 cut(s)	407
BstSLI	GKGCMC	3 cut(s)	338, 416, 426
BstUI	CGCG	2 cut(s)	362, 574
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	366
CseI	GACGC	1 cut(s)	503
CsiI	ACCWGGT	1 cut(s)	544
DdeI	CTNAG	3 cut(s)	318, 342, 352
DpnI	GATC	2 cut(s)	102, 398
DpnII	GATC	2 cut(s)	100, 396
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	215
EcoRII	CCWGG	3 cut(s)	80, 242, 544
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	501
FauNDI	CATATG	1 cut(s)	656
Fnu4HI	GCNGC	2 cut(s)	90, 575
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	90, 575
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	90, 575
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	3 cut(s)	130, 534, 551
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	414, 424
Hpy188I	TCNGA	2 cut(s)	184, 600
Hpy188III	TCNNGA	3 cut(s)	47, 283, 394
Hpy8I	GTNNAC	2 cut(s)	414, 424
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	2 cut(s)	421, 609
HpyCH4V	TGCA	6 cut(s)	309, 409, 414, 424, 492, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	318, 342, 352
HspAI	GCGC	1 cut(s)	360
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	100, 396
Lsp1109I	GCAGC	1 cut(s)	101
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	1 cut(s)	293
MalI	GATC	2 cut(s)	102, 398
MboI	GATC	2 cut(s)	100, 396
MboII	GAAGA	2 cut(s)	177, 656
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	3 cut(s)	338, 416, 426
MluCI	AATT	3 cut(s)	40, 286, 678
MlyI	GAGTC	2 cut(s)	124, 560
MmeI	TCCRAC	2 cut(s)	277, 447
MnlI	CCTC	6 cut(s)	15, 171, 357, 454, 580, 640
MroI	TCCGGA	1 cut(s)	46
MseI	TTAA	3 cut(s)	144, 324, 401
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	278
MspCI	CTTAAG	1 cut(s)	400
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	3 cut(s)	82, 244, 546
MvaI	CCWGG	3 cut(s)	82, 244, 546
MvnI	CGCG	2 cut(s)	362, 574
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeI	CATATG	1 cut(s)	656
NdeII	GATC	2 cut(s)	100, 396
NlaIV	GGNNCC	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	537
OliI	CACNNNNGTG	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	534
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	91, 576
PleI	GAGTC	2 cut(s)	124, 559
PpsI	GAGTC	2 cut(s)	124, 559
PsiI	TTATAA	1 cut(s)	446
Psp6I	CCWGG	3 cut(s)	80, 242, 544
PspGI	CCWGG	3 cut(s)	80, 242, 544
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	3 cut(s)	144, 324, 401
SatI	GCNGC	2 cut(s)	90, 575
Sau3AI	GATC	2 cut(s)	100, 396
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	2 cut(s)	124, 560
ScrFI	CCNGG	3 cut(s)	82, 244, 546
SduI	GDGCHC	3 cut(s)	338, 416, 426
SexAI	ACCWGGT	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	407
SfuI	TTCGAA	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	4 cut(s)	137, 392, 400, 578
SmoI	CTYRAG	4 cut(s)	137, 392, 400, 578
Sse9I	AATT	3 cut(s)	40, 286, 678
SsiI	CCGC	1 cut(s)	574
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	3 cut(s)	80, 242, 544
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	421, 609
TaqI	TCGA	2 cut(s)	163, 537
TasI	AATT	3 cut(s)	40, 286, 678
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	1 cut(s)	534
Tru1I	TTAA	3 cut(s)	144, 324, 401
Tru9I	TTAA	3 cut(s)	144, 324, 401
TscAI	CASTG	1 cut(s)	416
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	657, 699
TspRI	CASTG	1 cut(s)	416
Vha464I	CTTAAG	1 cut(s)	400
VneI	GTGCAC	2 cut(s)	412, 422
XapI	RAATTY	2 cut(s)	40, 678
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.