Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000155.1

Orthogroup ID

OG0010724

Physical Location & Seq

Genomic Coordinates Forward (+)

85103 .. 86723

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000155.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggctctgcaactctgggaaacactgaaggaggcgatcgtggcctacacgggcctatctccggcgaccttcttcacactcctggctctgctcttcgccgcttaccatgtcctttctgggctttttgggccgtccgagacccacaacccccccaggagcttggaggagatgcagcctcttcagccgccggtccagctcggcgagatcaccgccgaggagctcaagcagtacgacggctccgatcccaagaagcctctgctcatggctatcaagtctcagatctatgacgtgtctcagagcaggatgttttatggacctggaggtccttatgctctatttgcaggaaaagatgctagcagggctcttgcaaaaatgtctttcgaagacaaagatctcactggtgatactactggtcttggtccttttgagcttgaggccttgcaagattgggaatataagttcatgagcaagtatgtcaaggtcggaaccattaagagttcagttccagaaactcaggaggaatccactagtgaggccaccaaagatgctgaagatgtaccatcagaaatcccagctgtcaaatctgaggaaacctcctcgcctactgctgatgccaagcaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

208

Amino Acids

22.79

Weight (kDa)

4.58

Isoelectric Point (pI)

66.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52240 AT5G52240
fragaria_vesca	FvH4_7g29310
malus_domestica	MD01G1199500.v1.1 MD06G1084900.v1.1 MD07G1267300.v1.1 MD13G1074400.v1.1 MD17G1239500.v1.1
prunus_persica	Prupe.2G293000_v2.0.a1
pyrus_communis	pycom01g20940
rosa_chinensis	RchiOBHm_Chr1g0377051
rosa_laevigata	RLG00000026547
rosa_multiflora	Rmu_ssc0000155.1_g000020
rosa_roxburghii	Rroxscaffold_4G00281470
rosa_rugosa	Rorug01G0401300
rosa_samantha	Rh1AG418400 Rh1BG377500 Rh1CG391500 Rh1DG408200
rosa_wichuraiana	Rw1G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	321
AciI	CCGC	3 cut(s)	99, 185, 210
AclWI	GGATC	1 cut(s)	236
AcuI	CTGAAG	3 cut(s)	47, 164, 570
AfaI	GTAC	2 cut(s)	230, 558
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	288
AhlI	ACTAGT	1 cut(s)	527
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	3 cut(s)	81, 152, 316
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	5 cut(s)	159, 196, 220, 430, 575
AluI	AGCT	5 cut(s)	159, 196, 220, 430, 575
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	131, 279, 297
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	5 cut(s)	42, 52, 128, 435, 534
ApeKI	GCWGC	1 cut(s)	172
AspS9I	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
AsuHPI	GGTGA	2 cut(s)	199, 413
AsuII	TTCGAA	1 cut(s)	381
AsuNHI	GCTAGC	1 cut(s)	353
AvaII	GGWCC	4 cut(s)	190, 314, 323, 419
BanII	GRGCYC	2 cut(s)	222, 364
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	2 cut(s)	115, 250
BciT130I	CCWGG	3 cut(s)	83, 154, 318
BcoDI	GTCTC	3 cut(s)	131, 279, 297
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	2 cut(s)	354, 528
BglII	AGATCT	2 cut(s)	279, 391
BisI	GCNGC	3 cut(s)	99, 173, 185
BlsI	GCNGC	3 cut(s)	100, 174, 186
Bme1390I	CCNGG	3 cut(s)	83, 154, 318
Bme18I	GGWCC	4 cut(s)	190, 314, 323, 419
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
BmiI	GGNNCC	2 cut(s)	238, 487
BmrFI	CCNGG	3 cut(s)	83, 154, 318
BmsI	GCATC	4 cut(s)	159, 340, 535, 601
BmtI	GCTAGC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	206, 452
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	152, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	403, 415
BseBI	CCWGG	3 cut(s)	83, 154, 318
BseDI	CCNNGG	2 cut(s)	152, 213
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	290, 308, 527, 576
BseNI	ACTGG	2 cut(s)	403, 415
BseRI	GAGGAG	3 cut(s)	179, 230, 586
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	571
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	5 cut(s)	44, 54, 130, 437, 536
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	62, 188
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	3 cut(s)	131, 279, 297
BsnI	GGCC	5 cut(s)	44, 54, 130, 437, 536
Bso31I	GGTCTC	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	222, 364
Bsp143I	GATC	5 cut(s)	36, 204, 241, 279, 391
BspACI	CCGC	3 cut(s)	99, 185, 210
BspANI	GGCC	5 cut(s)	44, 54, 130, 437, 536
BspCNI	CTCAG	4 cut(s)	289, 307, 526, 577
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	238, 487
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	403, 415
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	152, 213
BssMI	GATC	5 cut(s)	36, 204, 241, 279, 391
Bst2UI	CCWGG	3 cut(s)	83, 154, 318
Bst6I	CTCTTC	2 cut(s)	98, 183
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	4 cut(s)	276, 294, 513, 585
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	5 cut(s)	39, 207, 244, 282, 394
BstMAI	GTCTC	3 cut(s)	131, 279, 297
BstMBI	GATC	5 cut(s)	36, 204, 241, 279, 391
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 127, 181, 193, 338, 359
BstNI	CCWGG	3 cut(s)	83, 154, 318
BstSCI	CCNGG	3 cut(s)	81, 152, 316
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	2 cut(s)	279, 391
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	2 cut(s)	279, 391
BsuRI	GGCC	5 cut(s)	44, 54, 130, 437, 536
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	23, 396
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
Csp6I	GTAC	2 cut(s)	229, 557
CviAII	CATG	3 cut(s)	107, 262, 463
CviQI	GTAC	2 cut(s)	229, 557
DdeI	CTNAG	4 cut(s)	276, 294, 513, 585
DpnI	GATC	5 cut(s)	38, 206, 243, 281, 393
DpnII	GATC	5 cut(s)	36, 204, 241, 279, 391
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	98, 183
EarI	CTCTTC	2 cut(s)	98, 183
Ecl136II	GAGCTC	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	2 cut(s)	222, 364
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	4 cut(s)	190, 314, 323, 419
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	3 cut(s)	47, 164, 570
EcoICRI	GAGCTC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	81, 152, 316
EcoT38I	GRGCYC	2 cut(s)	222, 364
FaeI	CATG	3 cut(s)	110, 265, 466
FaiI	YATR	8 cut(s)	108, 263, 285, 312, 330, 456, 464, 474
FatI	CATG	3 cut(s)	106, 261, 462
Fnu4HI	GCNGC	3 cut(s)	99, 173, 185
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	2 cut(s)	222, 364
Fsp4HI	GCNGC	3 cut(s)	99, 173, 185
FspBI	CTAG	2 cut(s)	354, 528
GluI	GCNGC	3 cut(s)	99, 173, 185
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	5 cut(s)	44, 54, 130, 437, 536
HapII	CCGG	2 cut(s)	62, 188
Hin1II	CATG	3 cut(s)	110, 265, 466
HinfI	GANTC	1 cut(s)	521
HpaII	CCGG	2 cut(s)	62, 188
HphI	GGTGA	2 cut(s)	199, 413
Hpy188I	TCNGA	7 cut(s)	136, 241, 279, 297, 485, 565, 586
Hpy188III	TCNNGA	3 cut(s)	463, 506, 515
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	22, 79
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	5 cut(s)	10, 172, 341, 368, 442
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 127, 181, 193, 338, 359
HpyF3I	CTNAG	4 cut(s)	276, 294, 513, 585
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	110, 265, 466
Kzo9I	GATC	5 cut(s)	36, 204, 241, 279, 391
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	156, 217, 242
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	4 cut(s)	159, 340, 535, 601
MaeI	CTAG	2 cut(s)	354, 528
MaeII	ACGT	1 cut(s)	288
MalI	GATC	5 cut(s)	38, 206, 243, 281, 393
MboI	GATC	5 cut(s)	36, 204, 241, 279, 391
MboII	GAAGA	5 cut(s)	64, 85, 170, 395, 563
MflI	RGATCY	2 cut(s)	279, 391
MhlI	GDGCHC	2 cut(s)	222, 364
MmeI	TCCRAC	1 cut(s)	463
MseI	TTAA	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	2 cut(s)	62, 188
MspR9I	CCNGG	3 cut(s)	83, 154, 318
MvaI	CCWGG	3 cut(s)	83, 154, 318
MwoI	GCNNNNNNNGC	6 cut(s)	41, 127, 181, 193, 338, 359
NdeII	GATC	5 cut(s)	36, 204, 241, 279, 391
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	110, 265, 466
NlaIV	GGNNCC	2 cut(s)	238, 487
NmeAIII	GCCGAG	2 cut(s)	177, 238
NspV	TTCGAA	1 cut(s)	381
PagI	TCATGA	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	100, 174, 186
Ple19I	CGATCG	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	3 cut(s)	81, 152, 316
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	3 cut(s)	81, 152, 316
PspN4I	GGNNCC	2 cut(s)	238, 487
PspPI	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
PspPPI	RGGWCCY	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	279, 391
PvuI	CGATCG	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	230, 558
RsaNI	GTAC	2 cut(s)	229, 557
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	99, 173, 185
Sau3AI	GATC	5 cut(s)	36, 204, 241, 279, 391
Sau96I	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
ScrFI	CCNGG	3 cut(s)	83, 154, 318
SduI	GDGCHC	2 cut(s)	222, 364
SfaNI	GCATC	4 cut(s)	159, 340, 535, 601
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	4 cut(s)	190, 314, 323, 419
SmlI	CTYRAG	2 cut(s)	221, 431
SmoI	CTYRAG	2 cut(s)	221, 431
SpeI	ACTAGT	1 cut(s)	527
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	3 cut(s)	99, 185, 210
SspMI	CTAG	2 cut(s)	354, 528
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	3 cut(s)	81, 152, 316
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	381
TauI	GCSGC	2 cut(s)	101, 187
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	2 cut(s)	30, 403
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	451
TspRI	CASTG	2 cut(s)	30, 403
VpaK11BI	GGWCC	4 cut(s)	190, 314, 323, 419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	2 cut(s)	354, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.