Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010724

Physical Location & Seq

Genomic Coordinates Forward (+)

3738747 .. 3739070

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTTTATGGACCTGGAGGTCCTTATGCTCTATTTGCAGGAAAAGATGCTAGCAGGGCTCTTGCAAAAATGTCTTTCGAAGACAAAGATCTCACTGGTGATACTACTGGTCTTGGTCCTTTTGAGCTTGAGGCCTTGCAAGATTGGGAATATAAGTTCATGAGCAAGTACGTCAAGGTCGGAACCATTAAGAGTTCAGTTCCAGAAACTCAGGAGGAATCCACTAGTGAGGCCACCAAAGCTGCTGAAGATGTACCATCAGAAAGCCCAGCTGTCAAATCTGGGGAAAGCTCCTCGCCTACTGCTGATGCCAAGCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

108

Amino Acids

11.44

Weight (kDa)

4.51

Isoelectric Point (pI)

68.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52240 AT5G52240
fragaria_vesca	FvH4_7g29310
malus_domestica	MD01G1199500.v1.1 MD06G1084900.v1.1 MD07G1267300.v1.1 MD13G1074400.v1.1 MD17G1239500.v1.1
prunus_persica	Prupe.2G293000_v2.0.a1
pyrus_communis	pycom01g20940
rosa_chinensis	RchiOBHm_Chr1g0377051
rosa_laevigata	RLG00000026547
rosa_multiflora	Rmu_ssc0000155.1_g000020
rosa_roxburghii	Rroxscaffold_4G00281470
rosa_rugosa	Rorug01G0401300
rosa_samantha	Rh1AG418400 Rh1BG377500 Rh1CG391500 Rh1DG408200
rosa_wichuraiana	Rw1G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	170, 255
AhlI	ACTAGT	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	13
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	4 cut(s)	127, 242, 272, 291
AluI	AGCT	4 cut(s)	127, 242, 272, 291
AoxI	GGCC	2 cut(s)	132, 231
ApeKI	GCWGC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	11, 20, 116
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	78
AsuNHI	GCTAGC	1 cut(s)	50
AvaII	GGWCC	3 cut(s)	11, 20, 116
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	15
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	51, 225
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	3 cut(s)	11, 20, 116
BmgT120I	GGNCC	3 cut(s)	11, 20, 116
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	37, 298
BmtI	GCTAGC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	100, 112
BseBI	CCWGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	100, 112
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	2 cut(s)	134, 233
BsnI	GGCC	2 cut(s)	134, 233
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	134, 233
BspCNI	CTCAG	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	100, 112
BssMI	GATC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 56, 239
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	134, 233
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	52
CciI	TCATGA	1 cut(s)	159
Cfr13I	GGNCC	3 cut(s)	11, 20, 116
Csp6I	GTAC	2 cut(s)	169, 254
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	8 cut(s)	59, 127, 134, 233, 242, 267, 272, 291
CviKI_1	RGCY	8 cut(s)	59, 127, 134, 233, 242, 267, 272, 291
CviQI	GTAC	2 cut(s)	169, 254
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DrdI	GACNNNNNNGTC	1 cut(s)	18
DseDI	GACNNNNNNGTC	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	3 cut(s)	11, 20, 116
Eco57I	CTGAAG	1 cut(s)	267
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	1 cut(s)	163
FaiI	YATR	4 cut(s)	9, 27, 153, 161
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	51, 225
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	134, 233
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	1 cut(s)	218
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	182, 262
Hpy188III	TCNNGA	3 cut(s)	160, 203, 212
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	38, 65, 139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 56, 239
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	9 cut(s)	24, 27, 40, 81, 93, 197, 216, 267, 282
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	37, 298
MaeI	CTAG	2 cut(s)	51, 225
MaeII	ACGT	1 cut(s)	171
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	92, 260
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	11, 124, 208, 223, 304
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	35, 56, 239
NdeII	GATC	1 cut(s)	88
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	78
PagI	TCATGA	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	11, 20, 116
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	170, 255
RsaNI	GTAC	2 cut(s)	169, 254
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	11, 20, 116
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	8 cut(s)	16, 22, 129, 174, 180, 244, 274, 293
SfaNI	GCATC	2 cut(s)	37, 298
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	3 cut(s)	11, 20, 116
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	224
SseBI	AGGCCT	1 cut(s)	134
SspMI	CTAG	2 cut(s)	51, 225
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	13
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	3 cut(s)	11, 20, 116
XspI	CTAG	2 cut(s)	51, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.