Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010724

Physical Location & Seq

Genomic Coordinates Reverse (-)

65966548 .. 65966925

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG391500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCACTCTTTAACAAGGTTCTAATCTTTTCACATCTGGACCATTCTTGCAGGATGTTTTATGGACCTGGAGGTCCTTATGCTCTATTTGCAGGAAAAGATGCTAGCAGGGCTCTTGCAAAAATGTCTTTCGAAGACAAAGATCTCACTGGTGATACTACTGGTCTTGGTCCTTTTGAGCTTGAGGCCTTGCAAGATTGGGAATATAAGTTCATGAGCAAGTATGTCAAGGTCGGAACCATTAAGAGCTCAGTTCCAGAAACTCAGGAGGAATCCACTAGTGAGGCCACCAAAGCTGCTGAAGATGTACCATCAGAAAGCCCAGCTGTCAAATCTGAGGAGACCTCCTCGTCTACTGCTGATGCCAAGCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

125

Amino Acids

13.64

Weight (kDa)

4.76

Isoelectric Point (pI)

67.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52240 AT5G52240
fragaria_vesca	FvH4_7g29310
malus_domestica	MD01G1199500.v1.1 MD06G1084900.v1.1 MD07G1267300.v1.1 MD13G1074400.v1.1 MD17G1239500.v1.1
prunus_persica	Prupe.2G293000_v2.0.a1
pyrus_communis	pycom01g20940
rosa_chinensis	RchiOBHm_Chr1g0377051
rosa_laevigata	RLG00000026547
rosa_multiflora	Rmu_ssc0000155.1_g000020
rosa_roxburghii	Rroxscaffold_4G00281470
rosa_rugosa	Rorug01G0401300
rosa_samantha	Rh1AG418400 Rh1BG377500 Rh1CG391500 Rh1DG408200
rosa_wichuraiana	Rw1G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	72, 349
AccI	GTMKAC	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	309
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	67
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	4 cut(s)	181, 249, 296, 326
AluI	AGCT	4 cut(s)	181, 249, 296, 326
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	186, 285
ApeKI	GCWGC	1 cut(s)	296
AspS9I	GGNCC	4 cut(s)	40, 65, 74, 170
AsuHPI	GGTGA	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	132
AsuNHI	GCTAGC	1 cut(s)	104
AvaII	GGWCC	4 cut(s)	40, 65, 74, 170
BanII	GRGCYC	2 cut(s)	115, 251
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	335
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	2 cut(s)	105, 279
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	4 cut(s)	40, 65, 74, 170
BmgT120I	GGNCC	4 cut(s)	40, 65, 74, 170
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	91, 352
BmtI	GCTAGC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	4 cut(s)	329, 361, 332, 364
BpmI	CTGGAG	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	154, 166
BseBI	CCWGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	264, 278, 327
BseNI	ACTGG	2 cut(s)	154, 166
BseRI	GAGGAG	2 cut(s)	337, 353
BseXI	GCAGC	1 cut(s)	283
BseYI	CCCAGC	1 cut(s)	322
BshFI	GGCC	2 cut(s)	188, 287
BsiHKAI	GWGCWC	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	188, 287
Bso31I	GGTCTC	1 cut(s)	335
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	115, 251
Bsp143I	GATC	1 cut(s)	142
BspANI	GGCC	2 cut(s)	188, 287
BspCNI	CTCAG	3 cut(s)	263, 277, 328
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	238
BspOI	GCTAGC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	154, 166
BssMI	GATC	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	69
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	3 cut(s)	250, 264, 336
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 110, 293
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	188, 287
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	106
CciI	TCATGA	1 cut(s)	213
Cfr13I	GGNCC	4 cut(s)	40, 65, 74, 170
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	8 cut(s)	113, 181, 188, 249, 287, 296, 321, 326
CviKI_1	RGCY	8 cut(s)	113, 181, 188, 249, 287, 296, 321, 326
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	3 cut(s)	250, 264, 336
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
DrdI	GACNNNNNNGTC	2 cut(s)	72, 349
DseDI	GACNNNNNNGTC	2 cut(s)	72, 349
Ecl136II	GAGCTC	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	188
Eco24I	GRGCYC	2 cut(s)	115, 251
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	4 cut(s)	40, 65, 74, 170
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	67
EcoT38I	GRGCYC	2 cut(s)	115, 251
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	63, 81, 207, 215, 225
FatI	CATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	2 cut(s)	115, 251
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	2 cut(s)	105, 279
GluI	GCNGC	1 cut(s)	297
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	188, 287
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	272
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	3 cut(s)	236, 316, 337
Hpy188III	TCNNGA	4 cut(s)	38, 214, 257, 266
Hpy8I	GTNNAC	1 cut(s)	354
HpyCH4V	TGCA	4 cut(s)	51, 92, 119, 193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 110, 293
HpyF3I	CTNAG	3 cut(s)	250, 264, 336
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	2 cut(s)	91, 352
MaeI	CTAG	2 cut(s)	105, 279
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	146, 314
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	115, 251
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	65, 178, 262, 277, 331, 355, 358
MseI	TTAA	2 cut(s)	12, 243
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	89, 110, 293
NdeII	GATC	1 cut(s)	142
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	3
NspV	TTCGAA	1 cut(s)	132
PagI	TCATGA	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	4 cut(s)	40, 65, 74, 170
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	12, 243
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	4 cut(s)	40, 65, 74, 170
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	115, 251
SetI	ASST	9 cut(s)	21, 70, 76, 183, 234, 251, 298, 328, 347
SfaNI	GCATC	2 cut(s)	91, 352
SfuI	TTCGAA	1 cut(s)	132
SinI	GGWCC	4 cut(s)	40, 65, 74, 170
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	278
SseBI	AGGCCT	1 cut(s)	188
SspMI	CTAG	2 cut(s)	105, 279
SstI	GAGCTC	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	67
TaqI	TCGA	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	12, 243
Tru9I	TTAA	2 cut(s)	12, 243
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	4 cut(s)	40, 65, 74, 170
XmiI	GTMKAC	1 cut(s)	353
XspI	CTAG	2 cut(s)	105, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.