Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010592

Physical Location & Seq

Genomic Coordinates Reverse (-)

21679452 .. 21680500

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCGAACTCGCTTCCTCAACATCGACTACTTCACCCCCACTCCAATCCAAACCCTAGAAACCCTAACCTTCCTCCACCTCCCCATCCCCAACCTCCCTCGCTCCAACCTCTCCACCTCCGACGTCCTCCGCGCCGCCCTACGCTTCGATCCGCTCCTCCAAGTCTCGCTCCAAATCGAACAGCTCCCGATCAACGCCGCGCTCTCCAAGTTCTTCTCCGACGTTATCCCTCACAACCTCGCTCTCGACGCCGCAGAGCTCGCCGCTGCCGTTTCGGAGACGAATCGGAGCTGCTCCGGTAGCGCGGTTCGGGTTTCGGAGCAGATAGCTGATGTTTTCGAAAAGGAGAAGGGACAGGATAATCAGATAAAAACCGGTCTATGCGGAGACTGGGTTCAGGGTTCAGGGTTACTTTCAGAAGGAGGATGGTGGCAGAAGAGGTGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.51

Weight (kDa)

5.32

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29490
rosa_chinensis	RchiOBHm_Chr1g0369811
rosa_roxburghii	Rroxscaffold_2G00084220 Rroxscaffold_4G00289570 Rroxscaffold_5G00344170 Rroxscaffold_5G00382040 Rroxscaffold_7G00200370
rosa_rugosa	Rorug01G0336200 Rorug05G0321700 Rorug05G0358200 Rorug07G0079600
rosa_samantha	Rh1AG189800 Rh2AG234700 Rh2AG505600 Rh2CG491000 Rh4DG108500 Rh5BG493100 Rh5CG517000 Rh6CG102900 Rh6DG094200 Rh6DG317700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	154
AccII	CGCG	3 cut(s)	132, 200, 305
AciI	CCGC	8 cut(s)	130, 135, 152, 198, 252, 264, 305, 384
AclWI	GGATC	1 cut(s)	143
AcyI	GRCGYC	2 cut(s)	123, 249
AgeI	ACCGGT	1 cut(s)	374
AloI	GAACNNNNNNTCC	2 cut(s)	378, 410
AluBI	AGCT	4 cut(s)	184, 259, 291, 329
AluI	AGCT	4 cut(s)	184, 259, 291, 329
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	169, 272, 381
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	266, 291
AsiGI	ACCGGT	1 cut(s)	374
AspLEI	GCGC	3 cut(s)	134, 202, 305
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	253, 278
BccI	CCATC	2 cut(s)	92, 420
BceAI	ACGGC	1 cut(s)	254
BcoDI	GTCTC	3 cut(s)	169, 272, 381
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	6 cut(s)	135, 198, 252, 264, 267, 292
BlsI	GCNGC	6 cut(s)	136, 199, 253, 265, 268, 293
BmrI	ACTGGG	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	400
Bpu14I	TTCGAA	1 cut(s)	339
BsaHI	GRCGYC	2 cut(s)	123, 249
BsaWI	WCCGGW	2 cut(s)	296, 374
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 378, 408
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	395
BseGI	GGATG	2 cut(s)	84, 431
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	253, 278
Bsh1236I	CGCG	3 cut(s)	132, 200, 305
BshTI	ACCGGT	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	297, 375
BslFI	GGGAC	1 cut(s)	366
BsmAI	GTCTC	3 cut(s)	169, 272, 381
BsmBI	CGTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	148, 189
BspACI	CCGC	8 cut(s)	130, 135, 152, 198, 252, 264, 305, 384
BspFNI	CGCG	3 cut(s)	132, 200, 305
BspPI	GGATC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	374
BssMI	GATC	2 cut(s)	148, 189
BssNI	GRCGYC	2 cut(s)	123, 249
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	2 cut(s)	123, 249
BstBI	TTCGAA	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	84, 431
BstFNI	CGCG	3 cut(s)	132, 200, 305
BstHHI	GCGC	3 cut(s)	134, 202, 305
BstKTI	GATC	2 cut(s)	151, 192
BstMAI	GTCTC	3 cut(s)	169, 272, 381
BstMBI	GATC	2 cut(s)	148, 189
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 260, 300
BstUI	CGCG	3 cut(s)	132, 200, 305
BstV1I	GCAGC	2 cut(s)	253, 278
BtsCI	GGATG	2 cut(s)	84, 431
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	3 cut(s)	134, 202, 305
Cfr10I	RCCGGY	1 cut(s)	374
CseI	GACGC	1 cut(s)	257
CspAI	ACCGGT	1 cut(s)	374
CviJI	RGCY	4 cut(s)	184, 259, 291, 329
CviKI_1	RGCY	4 cut(s)	184, 259, 291, 329
DpnI	GATC	2 cut(s)	150, 191
DpnII	GATC	2 cut(s)	148, 189
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	272
FaiI	YATR	1 cut(s)	382
FaqI	GGGAC	1 cut(s)	366
Fnu4HI	GCNGC	6 cut(s)	135, 198, 252, 264, 267, 292
FokI	GGATG	2 cut(s)	71, 438
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	6 cut(s)	135, 198, 252, 264, 267, 292
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	3 cut(s)	133, 201, 304
GluI	GCNGC	6 cut(s)	135, 198, 252, 264, 267, 292
HapII	CCGG	2 cut(s)	297, 375
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	3 cut(s)	134, 202, 305
Hin1I	GRCGYC	2 cut(s)	123, 249
Hin6I	GCGC	3 cut(s)	132, 200, 303
HinP1I	GCGC	3 cut(s)	132, 200, 303
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	2 cut(s)	297, 375
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	7 cut(s)	121, 220, 277, 288, 319, 366, 418
Hpy188III	TCNNGA	2 cut(s)	187, 245
Hpy99I	CGWCG	3 cut(s)	125, 224, 251
HpyAV	CCTTC	3 cut(s)	79, 343, 413
HpyCH4IV	ACGT	2 cut(s)	123, 222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 260, 300
HpySE526I	ACGT	2 cut(s)	123, 222
Hsp92I	GRCGYC	2 cut(s)	123, 249
HspAI	GCGC	3 cut(s)	132, 200, 303
Kzo9I	GATC	2 cut(s)	148, 189
LmnI	GCTCC	7 cut(s)	107, 159, 174, 189, 288, 299, 319
LpnPI	CCDG	6 cut(s)	310, 341, 376, 383, 388, 390
Lsp1109I	GCAGC	2 cut(s)	253, 278
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	2 cut(s)	123, 222
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	2 cut(s)	150, 191
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	2 cut(s)	148, 189
MboII	GAAGA	2 cut(s)	205, 448
MhlI	GDGCHC	1 cut(s)	261
MmeI	TCCRAC	3 cut(s)	129, 144, 243
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	297, 375
MvnI	CGCG	3 cut(s)	132, 200, 305
MwoI	GCNNNNNNNGC	3 cut(s)	248, 260, 300
NdeII	GATC	2 cut(s)	148, 189
NspV	TTCGAA	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	283
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	6 cut(s)	136, 199, 253, 265, 268, 293
Psp124BI	GAGCTC	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	6 cut(s)	135, 198, 252, 264, 267, 292
Sau3AI	GATC	2 cut(s)	148, 189
SduI	GDGCHC	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	339
SsiI	CCGC	8 cut(s)	130, 135, 152, 198, 252, 264, 305, 384
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	261
TaiI	ACGT	2 cut(s)	126, 225
TaqI	TCGA	5 cut(s)	24, 147, 177, 246, 339
TauI	GCSGC	4 cut(s)	137, 200, 254, 266
TfiI	GAWTC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	266, 291
XspI	CTAG	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.