Rorug07G0079600

KH-domain-like of EngA bacterial GTPase enzymes, C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010592
Physical Location & Seq
Reverse (-)
6195514 .. 6196893
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0079600.1

Sequence Viewer

Length: 1059 bp
ATGGAAAAGTCAAAGACAAAAGAGAAAAAGCCAAAGAAATGGGGAAGGAAGAAGAAAGAAGATACAAAAGAAAATGCAAAGATCAAGTGTAGGCAACAGAAATGCACTCTAAGTGCTTTCTGGAGATTGATTGACACATACAGAGCCAAAATCCCAAAAGAGGCTTGGGATATTTTGAGTACTACTGTATTTTGGGGGATGATCCGGCCATTTTTCGAGAAGAAGCTCACTGAAACTCAGCTACACAAACATGAGGCCGACTTGGAGATTATACTGAAGTACTTTGATGTTAAAAAAGCCAAGTTTGTGTTTGGGGAGACAGAAATGGAAATAACATTGGAAGACATAAATGAATTGTTTGACCTGCCAACAACTGGTATTGAATGGGATCTAAGCAAGAAGGTGCTCAAGGAGGAACGGAAAGCATCTTCGATATTTGACGTCAATATGAGGAAAGAAACAGTAATCAAACCTGATCTGGAAAAGGCACTTGGCAAGGAGCTCAACAAGAAGAAGAAGGCTAATCCCAAGATAATTGCGGCACTGATTATCATGTACCTCTTCAACGCATTCCTCTTCAGCAGGACATCTACAACCTTAACATGGGACCTTATCAACGCTTGTGAAGACCTAGACAACATAAACAGCTTCAATTGGGCAAAGATGGTACTAGATTTTTTGATGGATGGGCTTCAGAGGCCGTCAACTCTTTCTGGCTGTCTCCTTCTCATATATTACTGGTTCTTGGAGAATACAAATATCAGAAACTGGATTCAAGGAATGGAGAATGAAAAACCGCGATTTGTGAGGTGGTCAATAAAGGAGCTGTTCAACCTGCAGAAACTCCACCAGAATCCAGACTGGCCGGAGGAGTTAATAAGAGAAGGGTCGTGGTTGGAACCTAACTTCGTCAAGTTATTGGATATGGAAGAGGGGCAGGAAACACAAACTTTCACCAACTGGGTTCCACGAGCGAGTCAGGAAGAGAAAGAAGAGAACATTAGGGTTACTGGGAACATGAGAGTTCTCCTAATTAAAGGAGATGAATACAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_dom-like MMR_HSR1

Protein Analysis

352

Amino Acids

41.75

Weight (kDa)

8.41

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 101 - 275 8.1e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 444
Acc36I ACCTGC 2 cut(s) 372, 843
AccB7I CCANNNNNTGG 1 cut(s) 374
AccII CGCG 1 cut(s) 799
AciI CCGC 2 cut(s) 539, 797
AclWI GGATC 2 cut(s) 196, 396
AcoI YGGCCR 2 cut(s) 206, 863
AcuI CTGAAG 3 cut(s) 296, 562, 677
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 4 cut(s) 181, 281, 557, 669
AfiI CCNNNNNNNGG 3 cut(s) 160, 374, 603
AgsI TTSAA 5 cut(s) 383, 565, 652, 776, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AluBI AGCT 5 cut(s) 226, 241, 502, 648, 826
AluI AGCT 5 cut(s) 226, 241, 502, 648, 826
Alw21I GWGCWC 2 cut(s) 408, 504
Alw26I GTCTC 2 cut(s) 311, 725
AlwI GGATC 2 cut(s) 196, 396
AlwNI CAGNNNCTG 1 cut(s) 768
AoxI GGCC 4 cut(s) 206, 255, 698, 863
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 1 cut(s) 946
AvaII GGWCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 504
BauI CACGAG 1 cut(s) 969
BbsI GAAGAC 2 cut(s) 348, 633
Bbv12I GWGCWC 2 cut(s) 408, 504
BccI CCATC 3 cut(s) 658, 676, 680
BceAI ACGGC 1 cut(s) 685
BcoDI GTCTC 2 cut(s) 311, 725
BfaI CTAG 2 cut(s) 632, 671
BfmI CTRYAG 1 cut(s) 836
BfuAI ACCTGC 2 cut(s) 372, 843
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
BmcAI AGTACT 2 cut(s) 181, 281
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 3 cut(s) 608, 900, 966
BmrI ACTGGG 2 cut(s) 970, 1020
BmsI GCATC 1 cut(s) 434
BmuI ACTGGG 2 cut(s) 970, 1020
BpiI GAAGAC 2 cut(s) 348, 633
BpmI CTGGAG 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 441
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 374, 603
Bse1I ACTGG 6 cut(s) 379, 743, 773, 866, 965, 1015
BseGI GGATG 2 cut(s) 204, 691
BseLI CCNNNNNNNGG 3 cut(s) 160, 374, 603
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 6 cut(s) 379, 743, 773, 866, 965, 1015
BseRI GAGGAG 1 cut(s) 884
Bsh1236I CGCG 1 cut(s) 799
BshFI GGCC 4 cut(s) 208, 257, 700, 865
BsiHKAI GWGCWC 2 cut(s) 408, 504
BsiSI CCGG 2 cut(s) 205, 866
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 3 cut(s) 160, 374, 603
BsmAI GTCTC 2 cut(s) 311, 725
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 4 cut(s) 208, 257, 700, 865
Bsp1286I GDGCHC 2 cut(s) 408, 504
Bsp143I GATC 4 cut(s) 81, 201, 388, 475
BspACI CCGC 2 cut(s) 539, 797
BspANI GGCC 4 cut(s) 208, 257, 700, 865
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 799
BspLI GGNNCC 3 cut(s) 608, 900, 966
BspMAI CTGCAG 1 cut(s) 840
BspMI ACCTGC 2 cut(s) 372, 843
BspPI GGATC 2 cut(s) 196, 396
BsrI ACTGG 6 cut(s) 379, 743, 773, 866, 965, 1015
BssMI GATC 4 cut(s) 81, 201, 388, 475
BssNI GRCGYC 1 cut(s) 441
BssSI CACGAG 1 cut(s) 969
Bst2BI CACGAG 1 cut(s) 969
Bst4CI ACNGT 3 cut(s) 187, 463, 1052
Bst6I CTCTTC 5 cut(s) 566, 581, 924, 978, 987
BstACI GRCGYC 1 cut(s) 441
BstDEI CTNAG 3 cut(s) 110, 237, 392
BstF5I GGATG 2 cut(s) 204, 691
BstFNI CGCG 1 cut(s) 799
BstKTI GATC 4 cut(s) 84, 204, 391, 478
BstMAI GTCTC 2 cut(s) 311, 725
BstMBI GATC 4 cut(s) 81, 201, 388, 475
BstMWI GCNNNNNNNGC 1 cut(s) 697
BstSFI CTRYAG 1 cut(s) 836
BstUI CGCG 1 cut(s) 799
BstV2I GAAGAC 2 cut(s) 348, 633
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 4 cut(s) 208, 257, 700, 865
BtsCI GGATG 2 cut(s) 204, 691
BtsIMutI CAGTG 3 cut(s) 228, 542, 1057
BveI ACCTGC 2 cut(s) 372, 843
CaiI CAGNNNCTG 1 cut(s) 768
Cfr13I GGNCC 1 cut(s) 607
Csp6I GTAC 4 cut(s) 180, 280, 556, 668
CviAII CATG 4 cut(s) 251, 553, 603, 1018
CviQI GTAC 4 cut(s) 180, 280, 556, 668
DdeI CTNAG 3 cut(s) 110, 237, 392
DpnI GATC 4 cut(s) 83, 203, 390, 477
DpnII GATC 4 cut(s) 81, 201, 388, 475
EaeI YGGCCR 2 cut(s) 206, 863
Eam1104I CTCTTC 5 cut(s) 566, 581, 924, 978, 987
EarI CTCTTC 5 cut(s) 566, 581, 924, 978, 987
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 3 cut(s) 296, 562, 677
EcoICRI GAGCTC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 504
FaeI CATG 4 cut(s) 254, 556, 606, 1021
FaqI GGGAC 1 cut(s) 620
FatI CATG 4 cut(s) 250, 552, 602, 1017
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 2 cut(s) 211, 698
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 2 cut(s) 632, 671
GluI GCNGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 4 cut(s) 208, 257, 700, 865
HapII CCGG 2 cut(s) 205, 866
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 4 cut(s) 254, 556, 606, 1021
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HinfI GANTC 3 cut(s) 772, 853, 976
HpaII CCGG 2 cut(s) 205, 866
HphI GGTGA 1 cut(s) 946
Hpy166II GTNNAC 1 cut(s) 705
Hpy188I TCNGA 2 cut(s) 696, 764
Hpy188III TCNNGA 5 cut(s) 121, 217, 479, 857, 980
Hpy8I GTNNAC 1 cut(s) 705
HpyAV CCTTC 5 cut(s) 39, 394, 511, 734, 878
HpyCH4III ACNGT 3 cut(s) 187, 463, 1052
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 3 cut(s) 77, 105, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 697
HpyF3I CTNAG 3 cut(s) 110, 237, 392
HpySE526I ACGT 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 4 cut(s) 254, 556, 606, 1021
Kzo9I GATC 4 cut(s) 81, 201, 388, 475
LmnI GCTCC 2 cut(s) 499, 823
LweI GCATC 1 cut(s) 434
MaeI CTAG 2 cut(s) 632, 671
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 1006
MalI GATC 4 cut(s) 83, 203, 390, 477
MboI GATC 4 cut(s) 81, 201, 388, 475
MfeI CAATTG 1 cut(s) 652
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 408, 504
MluCI AATT 4 cut(s) 353, 534, 652, 1032
MlyI GAGTC 1 cut(s) 985
MmeI TCCRAC 1 cut(s) 876
MseI TTAA 4 cut(s) 291, 599, 875, 1035
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 2 cut(s) 205, 866
MunI CAATTG 1 cut(s) 652
Mva1269I GAATGC 1 cut(s) 569
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 1 cut(s) 697
NdeII GATC 4 cut(s) 81, 201, 388, 475
NlaIII CATG 4 cut(s) 254, 556, 606, 1021
NlaIV GGNNCC 3 cut(s) 608, 900, 966
PctI GAATGC 1 cut(s) 569
PfeI GAWTC 2 cut(s) 772, 853
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 1 cut(s) 984
PpsI GAGTC 1 cut(s) 984
PpuMI RGGWCCY 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 607
PspN4I GGNNCC 3 cut(s) 608, 900, 966
PspPI GGNCC 1 cut(s) 607
PspPPI RGGWCCY 1 cut(s) 607
PstI CTGCAG 1 cut(s) 840
PstNI CAGNNNCTG 1 cut(s) 768
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 4 cut(s) 181, 281, 557, 669
RsaNI GTAC 4 cut(s) 180, 280, 556, 668
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 4 cut(s) 291, 599, 875, 1035
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 4 cut(s) 81, 201, 388, 475
Sau96I GGNCC 1 cut(s) 607
ScaI AGTACT 2 cut(s) 181, 281
SchI GAGTC 1 cut(s) 985
SduI GDGCHC 2 cut(s) 408, 504
SfaNI GCATC 1 cut(s) 434
SfcI CTRYAG 1 cut(s) 836
SinI GGWCC 1 cut(s) 607
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 4 cut(s) 353, 534, 652, 1032
SsiI CCGC 2 cut(s) 539, 797
SspMI CTAG 2 cut(s) 632, 671
SstI GAGCTC 1 cut(s) 504
TaaI ACNGT 3 cut(s) 187, 463, 1052
TaiI ACGT 1 cut(s) 444
TaqI TCGA 2 cut(s) 216, 431
TasI AATT 4 cut(s) 353, 534, 652, 1032
TatI WGTACW 2 cut(s) 179, 279
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 2 cut(s) 772, 853
Tru1I TTAA 4 cut(s) 291, 599, 875, 1035
Tru9I TTAA 4 cut(s) 291, 599, 875, 1035
TscAI CASTG 3 cut(s) 235, 549, 1057
TspDTI ATGAA 3 cut(s) 366, 804, 1059
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 3 cut(s) 235, 549, 1057
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 162
XspI CTAG 2 cut(s) 632, 671
ZraI GACGTC 1 cut(s) 442
ZrmI AGTACT 2 cut(s) 181, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.