Rh4DG108500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010592
Physical Location & Seq
Forward (+)
16636724 .. 16641117
4394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG108500.1

Sequence Viewer

Length: 267 bp
ATGTCCTCCAAGTCTCCTTCCAAATCGAACAGTTGCCGATCACCGCCGCTCTCTCCAAGTTCTTCTTCTACATCCTCTCTTAGAGCCTCGTCGTCGATGTCGCGGACTTCGAGGCTCCAAAAACGGCGCAGTTTCGATTCCGGAAGCAGTGCGGTTTGGGTTTCGAAGGCCCATGTCATGGAAGAAATGGTCATTTCAACGACCATTGGTATGGATGGAATTTCACTTGCCTCCAAAGAGGCAACTGTTAAAGAGTCATCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.28

Weight (kDa)

10.28

Isoelectric Point (pI)

101.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 178
AccBSI CCGCTC 1 cut(s) 49
AccII CGCG 1 cut(s) 103
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 4 cut(s) 44, 47, 103, 152
AcsI RAATTY 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
Alw26I GTCTC 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 219
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 33
AsuII TTCGAA 1 cut(s) 164
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 18
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 140
BseGI GGATG 2 cut(s) 71, 220
BseLI CCNNNNNNNGG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 164
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 4 cut(s) 44, 47, 103, 152
BspANI GGCC 1 cut(s) 170
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 164
BsrBI CCGCTC 1 cut(s) 49
BssMI GATC 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 32, 247
BstBI TTCGAA 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 71, 220
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 38
BstUI CGCG 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 71, 220
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 2 cut(s) 173, 178
CviJI RGCY 3 cut(s) 86, 115, 170
CviKI_1 RGCY 3 cut(s) 86, 115, 170
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
FaeI CATG 2 cut(s) 176, 181
FaiI YATR 3 cut(s) 174, 179, 212
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FatI CATG 2 cut(s) 172, 177
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 2 cut(s) 58, 227
Fsp4HI GCNGC 1 cut(s) 47
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 176, 181
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 2 cut(s) 137, 254
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 141
Hpy99I CGWCG 2 cut(s) 94, 97
HpyAV CCTTC 2 cut(s) 27, 160
HpyCH4III ACNGT 2 cut(s) 32, 247
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 2 cut(s) 176, 181
HspAI GCGC 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 140
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 1 cut(s) 154
MalI GATC 1 cut(s) 40
MbiI CCGCTC 1 cut(s) 49
MboI GATC 1 cut(s) 38
MboII GAAGA 3 cut(s) 54, 57, 194
MluCI AATT 1 cut(s) 219
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 6 cut(s) 16, 85, 97, 105, 232, 241
MroI TCCGGA 1 cut(s) 140
MseI TTAA 2 cut(s) 249, 265
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 103
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 176, 181
NlaIV GGNNCC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 2 cut(s) 249, 265
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 263
SfuI TTCGAA 1 cut(s) 164
SgeI CNNG 9 cut(s) 22, 69, 100, 114, 123, 153, 185, 190, 239
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 1 cut(s) 219
SsiI CCGC 4 cut(s) 44, 47, 103, 152
TaaI ACNGT 2 cut(s) 32, 247
TaqI TCGA 5 cut(s) 26, 95, 110, 135, 164
TasI AATT 1 cut(s) 219
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 249, 265
Tru9I TTAA 2 cut(s) 249, 265
TscAI CASTG 1 cut(s) 154
TspRI CASTG 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 178
XapI RAATTY 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.