Rroxscaffold_5G00382040

KH-domain-like of EngA bacterial GTPase enzymes, C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010592
Physical Location & Seq
Forward (+)
61914777 .. 61916414
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382040.1

Sequence Viewer

Length: 354 bp
ATGTCGAGGACTTCGAGGCTCCGAAACGAGAGCGGTTTCGATTCCGAAGCGTGCGGTTTGCGTTTCGAAGGAATTATGAAACAGGCCCATGTCATGGAAGAAATGGTCATTTCAACGACTATTGGTATGGATGGAATTTCACTTGCCTCCAAAGAGGCAGCTGTTGAAGAGTCATCTATCATTATTTTTCTTGTTGATGGCCAGGGTGAGATCATAATTTTGATTGAAGAATTAGGAAAGAATTGGTGGCATAAATTTCATATTTTCAAACTTGGAATGTTTTTTCCCAAGGCAAGAGGTTCCAAGCTGTCATTAGAGATCAGAACAGAGAAAGACTTGCAGCTTGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_dom-like MMR_HSR1

Protein Analysis

117

Amino Acids

13.19

Weight (kDa)

5.38

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 2 cut(s) 33, 54
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 135, 254
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 4 cut(s) 114, 167, 227, 268
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 161, 307, 343
AluI AGCT 3 cut(s) 161, 307, 343
AoxI GGCC 2 cut(s) 84, 199
ApeKI GCWGC 2 cut(s) 158, 340
ApoI RAATTY 2 cut(s) 135, 254
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 66
BalI TGGCCA 1 cut(s) 201
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 125, 191
BciT130I CCWGG 1 cut(s) 203
BisI GCNGC 2 cut(s) 159, 341
BlsI GCNGC 2 cut(s) 160, 342
Bme1390I CCNGG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 20, 301
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 337
Bpu14I TTCGAA 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 202, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 202, 288
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 2 cut(s) 86, 201
BslI CCNNNNNNNGG 1 cut(s) 94
BsnI GGCC 2 cut(s) 86, 201
Bsp119I TTCGAA 1 cut(s) 66
Bsp143I GATC 2 cut(s) 210, 318
BspACI CCGC 2 cut(s) 33, 54
BspANI GGCC 2 cut(s) 86, 201
BspLI GGNNCC 2 cut(s) 20, 301
BspT104I TTCGAA 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 202, 288
BssMI GATC 2 cut(s) 210, 318
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 213, 321
BstMBI GATC 2 cut(s) 210, 318
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 170
BsuRI GGCC 2 cut(s) 86, 201
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 85
CviAII CATG 2 cut(s) 89, 94
CviJI RGCY 6 cut(s) 19, 86, 161, 201, 307, 343
CviKI_1 RGCY 6 cut(s) 19, 86, 161, 201, 307, 343
DpnI GATC 2 cut(s) 212, 320
DpnII GATC 2 cut(s) 210, 318
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 92, 97
FaiI YATR 7 cut(s) 77, 90, 95, 128, 215, 252, 261
FatI CATG 2 cut(s) 88, 93
Fnu4HI GCNGC 2 cut(s) 159, 341
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 159, 341
GluI GCNGC 2 cut(s) 159, 341
HaeIII GGCC 2 cut(s) 86, 201
Hin1II CATG 2 cut(s) 92, 97
HinfI GANTC 2 cut(s) 41, 170
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 23, 46, 323
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 340
Hsp92II CATG 2 cut(s) 92, 97
Kzo9I GATC 2 cut(s) 210, 318
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 3 cut(s) 68, 188, 215
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 337
MalI GATC 2 cut(s) 212, 320
MbiI CCGCTC 1 cut(s) 33
MboI GATC 2 cut(s) 210, 318
MboII GAAGA 3 cut(s) 110, 179, 239
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 6 cut(s) 72, 135, 216, 230, 241, 254
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 4 cut(s) 9, 148, 157, 290
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 1 cut(s) 352
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NdeII GATC 2 cut(s) 210, 318
NlaIII CATG 2 cut(s) 92, 97
NlaIV GGNNCC 2 cut(s) 20, 301
NspV TTCGAA 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 2 cut(s) 160, 342
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 20, 301
PspPI GGNCC 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 2 cut(s) 159, 341
Sau3AI GATC 2 cut(s) 210, 318
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 203
SetI ASST 4 cut(s) 163, 301, 309, 345
SfaNI GCATC 1 cut(s) 337
SfuI TTCGAA 1 cut(s) 66
Sse9I AATT 6 cut(s) 72, 135, 216, 230, 241, 254
SsiI CCGC 2 cut(s) 33, 54
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 4 cut(s) 5, 14, 39, 66
TasI AATT 6 cut(s) 72, 135, 216, 230, 241, 254
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TseI GCWGC 2 cut(s) 158, 340
TspDTI ATGAA 2 cut(s) 92, 248
Van91I CCANNNNNTGG 1 cut(s) 94
XapI RAATTY 2 cut(s) 135, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.