Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010592

Physical Location & Seq

Genomic Coordinates Forward (+)

45466837 .. 45471995

Gene Structure 5159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0358200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCTTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGATGAGGAGCCTGAGGAACAGGACGTTGACATCGAGAATCAATATTACAACTCTAAAGGTTTGGTTGAGACTGATCCAGAAGGAGCACTTTCAGGATTTGAGGAAGTAGTTGGCATGGAGCCCGAGAAGGCCGAGTGGGGATTTAAAGCTTTGAAACAGACTGTGAAGATCTATTATCGTCTCGGGAGGTATAAAGAAATGATGGATTCGTACAGGGTGATGTTGACATACATCAAATCAGCTGTAACGCGAAACTACAGTGAGAAATGTATAAACAACATTATGGATTTTGTTTCTGGATCAGCGAGTCAAAACTTTGGTCTCCTGCAAGAGTTTTATCAGACCACTCTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGGCTTTGGTTCAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGGGCGAATATGGGAGAATGAGTAAGATTCTCAAGGAACTCCATAAGTCTTGTCAAAAAGAAGATGGTACAGATGATCAAAAGAAAGGAAGTCAACTTTTGGAGGTTTATGCAATTGAGATTCAAATGTACACTGAGACTAAAAATAACAAAAAGCTCAAGCAATTATACCAAAAAGCTCTTGCAATCAAGTCTGCAATTCCTCATCCTAGGATCATGGGAATTATTCGTGAGTGTGGCGGTAAGATGCATATGGCAGAGCGTCAGTGGGCAGAGGCCGCCACAGATTTTTTTGAAGCTTTTAAGAACTATGATGAAGCTGGGAACCAGAGGCGTATTCAATGCTTGAAATATTTAGTTCTGGCTAATATGCTGATGGAGTCCGAGGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAATGATCCTGAGATCTTGGCAATGACAAATCTCATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGAGTAATAGGAGGACAATTATGGATGATCCATTCATTCGAAACTATATTGAAGATTTGTTGAAGAATGTCAGAACTCAAGTTCTGCTTAAACTAATCAAGCCGTACACACGGATCCGAATTCCTTTCATATCAAAGGAACTCAATGTCCCTGAGAAAGATGTTGAGCAGCTCTTGGTTTCACTAATATTGGATAACCGAATCGATGGACATATTGATCAAGTGAACCGGCTCTTAGAGCGTGGTGACAGGTCAAAGGGAATGAAGAAGTATGCTGCCGTAGATAAATGGAACACGCAGCTGAGGTCTCTTTACCAAACAATTGGTAACCGAGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_dom-like MMR_HSR1

Protein Analysis

439

Amino Acids

51.36

Weight (kDa)

5.89

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	326 - 406	1.6e-23	PCI domain
COPS2_C	PF25983	414 - 438	1.4e-13	COP9 signalosome complex subunit 2, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29490
rosa_chinensis	RchiOBHm_Chr1g0369811
rosa_roxburghii	Rroxscaffold_2G00084220 Rroxscaffold_4G00289570 Rroxscaffold_5G00344170 Rroxscaffold_5G00382040 Rroxscaffold_7G00200370
rosa_rugosa	Rorug01G0336200 Rorug05G0321700 Rorug05G0358200 Rorug07G0079600
rosa_samantha	Rh1AG189800 Rh2AG234700 Rh2AG505600 Rh2CG491000 Rh4DG108500 Rh5BG493100 Rh5CG517000 Rh6CG102900 Rh6DG094200 Rh6DG317700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccII	CGCG	1 cut(s)	295
AciI	CCGC	2 cut(s)	711, 750
AclWI	GGATC	7 cut(s)	113, 352, 692, 896, 1001, 1087, 1100
AcsI	RAATTY	3 cut(s)	459, 972, 1098
AfaI	GTAC	5 cut(s)	41, 257, 541, 602, 1085
AfiI	CCNNNNNNNGG	2 cut(s)	409, 872
AflII	CTTAAG	2 cut(s)	446, 977
AgsI	TTSAA	9 cut(s)	199, 407, 436, 596, 767, 812, 820, 1031, 1042
AloI	GAACNNNNNNTCC	2 cut(s)	1110, 1142
AluBI	AGCT	9 cut(s)	194, 287, 451, 628, 650, 770, 791, 1150, 1279
AluI	AGCT	9 cut(s)	194, 287, 451, 628, 650, 770, 791, 1150, 1279
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	5 cut(s)	107, 230, 371, 602, 1290
AlwI	GGATC	7 cut(s)	113, 352, 692, 896, 1001, 1087, 1100
Ama87I	CYCGRG	2 cut(s)	167, 227
AoxI	GGCC	3 cut(s)	174, 399, 747
ApeKI	GCWGC	4 cut(s)	935, 1147, 1253, 1276
ApoI	RAATTY	3 cut(s)	459, 972, 1098
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspA2I	CCTAGG	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	274, 1235
AsuII	TTCGAA	1 cut(s)	1018
AvaI	CYCGRG	2 cut(s)	167, 227
AvrII	CCTAGG	1 cut(s)	680
AxyI	CCTNAGG	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	1092
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	1280
BbvI	GCAGC	4 cut(s)	947, 1159, 1240, 1288
BccI	CCATC	5 cut(s)	241, 530, 841, 866, 1178
BceAI	ACGGC	3 cut(s)	874, 1066, 1241
BclI	TGATCA	2 cut(s)	547, 1195
BcoDI	GTCTC	5 cut(s)	107, 230, 371, 602, 1290
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	1 cut(s)	301
BfrI	CTTAAG	2 cut(s)	446, 977
BglII	AGATCT	3 cut(s)	213, 909, 954
BisI	GCNGC	5 cut(s)	750, 936, 1148, 1254, 1277
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	5 cut(s)	751, 937, 1149, 1255, 1278
BmcAI	AGTACT	1 cut(s)	41
BmeT110I	CYCGRG	2 cut(s)	167, 227
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	4 cut(s)	54, 165, 797, 1094
BmsI	GCATC	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	1280
Bpu14I	TTCGAA	1 cut(s)	1018
BpuEI	CTTGAG	3 cut(s)	488, 614, 1041
Bsa29I	ATCGAT	1 cut(s)	1182
BsaI	GGTCTC	2 cut(s)	371, 1290
BsaJI	CCNNGG	2 cut(s)	680, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 872
Bse118I	RCCGGY	1 cut(s)	1206
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	924
BseCI	ATCGAT	1 cut(s)	1182
BseDI	CCNNGG	2 cut(s)	680, 855
BseGI	GGATG	3 cut(s)	52, 676, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	409, 872
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	5 cut(s)	48, 597, 897, 1122, 1271
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	4 cut(s)	947, 1159, 1240, 1288
BseYI	CCCAGC	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	3 cut(s)	176, 401, 749
BshVI	ATCGAT	1 cut(s)	1182
BsiHKAI	GWGCWC	1 cut(s)	133
BsiHKCI	CYCGRG	2 cut(s)	167, 227
BsiSI	CCGG	1 cut(s)	1207
BslFI	GGGAC	1 cut(s)	1112
BslI	CCNNNNNNNGG	2 cut(s)	409, 872
BsmAI	GTCTC	5 cut(s)	107, 230, 371, 602, 1290
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	1112
BsnI	GGCC	3 cut(s)	176, 401, 749
Bso31I	GGTCTC	2 cut(s)	371, 1290
BsoBI	CYCGRG	2 cut(s)	167, 227
Bsp119I	TTCGAA	1 cut(s)	1018
Bsp1286I	GDGCHC	2 cut(s)	133, 168
Bsp1407I	TGTACA	1 cut(s)	600
BspACI	CCGC	2 cut(s)	711, 750
BspANI	GGCC	3 cut(s)	176, 401, 749
BspCNI	CTCAG	5 cut(s)	49, 598, 898, 1123, 1272
BspDI	ATCGAT	1 cut(s)	1182
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	4 cut(s)	54, 165, 797, 1094
BspPI	GGATC	7 cut(s)	113, 352, 692, 896, 1001, 1087, 1100
BspT104I	TTCGAA	1 cut(s)	1018
BspTI	CTTAAG	2 cut(s)	446, 977
BspTNI	GGTCTC	2 cut(s)	371, 1290
BsrDI	GCAATG	1 cut(s)	924
BsrFI	RCCGGY	1 cut(s)	1206
BsrGI	TGTACA	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	1206
BssECI	CCNNGG	2 cut(s)	680, 855
BssT1I	CCWWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	208, 305
Bst6I	CTCTTC	1 cut(s)	402
BstAFI	CTTAAG	2 cut(s)	446, 977
BstAUI	TGTACA	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	1018
BstDEI	CTNAG	7 cut(s)	57, 606, 906, 958, 1131, 1213, 1280
BstEII	GGTNACC	1 cut(s)	1304
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	3 cut(s)	52, 676, 1009
BstFNI	CGCG	1 cut(s)	295
BstMAI	GTCTC	5 cut(s)	107, 230, 371, 602, 1290
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 749, 1216
BstPI	GGTNACC	1 cut(s)	1304
BstSFI	CTRYAG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	4 cut(s)	947, 1159, 1240, 1288
BstX2I	RGATCY	4 cut(s)	213, 909, 954, 1092
BstXI	CCANNNNNNTGG	1 cut(s)	1301
BstYI	RGATCY	4 cut(s)	213, 909, 954, 1092
Bsu15I	ATCGAT	1 cut(s)	1182
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	176, 401, 749
BsuTUI	ATCGAT	1 cut(s)	1182
BtsCI	GGATG	3 cut(s)	52, 676, 1009
BtsIMutI	CAGTG	3 cut(s)	310, 603, 743
Cfr10I	RCCGGY	1 cut(s)	1206
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	1182
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	5 cut(s)	40, 256, 540, 601, 1084
CviAII	CATG	2 cut(s)	160, 688
CviQI	GTAC	5 cut(s)	40, 256, 540, 601, 1084
DdeI	CTNAG	7 cut(s)	57, 606, 906, 958, 1131, 1213, 1280
DraI	TTTAAA	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	2 cut(s)	371, 1290
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	2 cut(s)	167, 227
Eco91I	GGTNACC	1 cut(s)	1304
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	400
EcoO65I	GGTNACC	1 cut(s)	1304
EcoRI	GAATTC	1 cut(s)	1098
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	680
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	163, 691
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 1050, 1082
FaqI	GGGAC	1 cut(s)	1112
FatI	CATG	2 cut(s)	159, 687
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	2 cut(s)	547, 1195
Fnu4HI	GCNGC	5 cut(s)	750, 936, 1148, 1254, 1277
FokI	GGATG	3 cut(s)	59, 663, 1016
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	5 cut(s)	750, 936, 1148, 1254, 1277
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	5 cut(s)	750, 936, 1148, 1254, 1277
GsaI	CCCAGC	1 cut(s)	795
HaeIII	GGCC	3 cut(s)	176, 401, 749
HapII	CCGG	1 cut(s)	1207
HgaI	GACGC	1 cut(s)	722
Hin1II	CATG	2 cut(s)	163, 691
HincII	GTYRAC	3 cut(s)	73, 270, 566
HindII	GTYRAC	3 cut(s)	73, 270, 566
HindIII	AAGCTT	3 cut(s)	192, 449, 768
HinfI	GANTC	8 cut(s)	33, 82, 251, 352, 499, 592, 851, 1179
HpaII	CCGG	1 cut(s)	1207
HphI	GGTGA	2 cut(s)	274, 1235
Hpy166II	GTNNAC	6 cut(s)	73, 270, 566, 603, 1086, 1204
Hpy188I	TCNGA	6 cut(s)	10, 46, 387, 856, 1052, 1097
Hpy188III	TCNNGA	9 cut(s)	79, 122, 138, 229, 342, 436, 701, 878, 905
Hpy8I	GTNNAC	6 cut(s)	73, 270, 566, 603, 1086, 1204
HpyAV	CCTTC	2 cut(s)	119, 166
HpyCH4III	ACNGT	2 cut(s)	208, 305
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	373, 456, 584, 656, 668, 721
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 749, 1216
HpyF3I	CTNAG	7 cut(s)	57, 606, 906, 958, 1131, 1213, 1280
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	163, 691
Ksp22I	TGATCA	2 cut(s)	547, 1195
LmnI	GCTCC	3 cut(s)	52, 128, 163
Lsp1109I	GCAGC	4 cut(s)	947, 1159, 1240, 1288
LweI	GCATC	1 cut(s)	708
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	289, 1223, 1304
MboII	GAAGA	6 cut(s)	223, 419, 545, 1043, 1054, 1255
MfeI	CAATTG	2 cut(s)	585, 1299
MflI	RGATCY	4 cut(s)	213, 909, 954, 1092
MhlI	GDGCHC	2 cut(s)	133, 168
MluCI	AATT	9 cut(s)	459, 585, 635, 669, 693, 972, 996, 1098, 1299
MlyI	GAGTC	2 cut(s)	361, 860
Mph1103I	ATGCAT	1 cut(s)	723
MseI	TTAA	6 cut(s)	189, 447, 774, 861, 978, 1068
MspA1I	CMGCKG	2 cut(s)	287, 1279
MspCI	CTTAAG	2 cut(s)	446, 977
MspI	CCGG	1 cut(s)	1207
MunI	CAATTG	2 cut(s)	585, 1299
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	11, 749, 1216
NdeI	CATATG	1 cut(s)	723
NlaIII	CATG	2 cut(s)	163, 691
NlaIV	GGNNCC	4 cut(s)	54, 165, 797, 1094
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	1223
NsiI	ATGCAT	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	1018
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	6 cut(s)	33, 82, 251, 499, 592, 1179
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	5 cut(s)	751, 937, 1149, 1255, 1278
PleI	GAGTC	2 cut(s)	360, 859
PpsI	GAGTC	2 cut(s)	360, 859
PspEI	GGTNACC	1 cut(s)	1304
PspFI	CCCAGC	1 cut(s)	791
PspN4I	GGNNCC	4 cut(s)	54, 165, 797, 1094
PspPI	GGNCC	1 cut(s)	400
PsuI	RGATCY	4 cut(s)	213, 909, 954, 1092
PvuII	CAGCTG	2 cut(s)	287, 1279
RsaI	GTAC	5 cut(s)	41, 257, 541, 602, 1085
RsaNI	GTAC	5 cut(s)	40, 256, 540, 601, 1084
SaqAI	TTAA	6 cut(s)	189, 447, 774, 861, 978, 1068
SatI	GCNGC	5 cut(s)	750, 936, 1148, 1254, 1277
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	2 cut(s)	361, 860
SduI	GDGCHC	2 cut(s)	133, 168
SfaNI	GCATC	1 cut(s)	708
SfcI	CTRYAG	1 cut(s)	301
SfuI	TTCGAA	1 cut(s)	1018
SmlI	CTYRAG	5 cut(s)	446, 503, 629, 977, 1056
SmoI	CTYRAG	5 cut(s)	446, 503, 629, 977, 1056
Sse9I	AATT	9 cut(s)	459, 585, 635, 669, 693, 972, 996, 1098, 1299
SsiI	CCGC	2 cut(s)	711, 750
SspI	AATATT	3 cut(s)	89, 824, 1167
SspMI	CTAG	1 cut(s)	681
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	208, 305
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	36, 78, 1018, 1182
TasI	AATT	9 cut(s)	459, 585, 635, 669, 693, 972, 996, 1098, 1299
TatI	WGTACW	2 cut(s)	39, 600
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	6 cut(s)	33, 82, 251, 499, 592, 1179
Tru1I	TTAA	6 cut(s)	189, 447, 774, 861, 978, 1068
Tru9I	TTAA	6 cut(s)	189, 447, 774, 861, 978, 1068
TscAI	CASTG	3 cut(s)	310, 610, 743
TseFI	GTSAC	1 cut(s)	1223
TseI	GCWGC	4 cut(s)	935, 1147, 1253, 1276
Tsp45I	GTSAC	1 cut(s)	1223
TspDTI	ATGAA	4 cut(s)	801, 1003, 1096, 1256
TspGWI	ACGGA	2 cut(s)	45, 1105
TspRI	CASTG	3 cut(s)	310, 610, 743
Van91I	CCANNNNNTGG	1 cut(s)	872
Vha464I	CTTAAG	2 cut(s)	446, 977
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	3 cut(s)	459, 972, 1098
XmaJI	CCTAGG	1 cut(s)	680
XspI	CTAG	1 cut(s)	681
ZrmI	AGTACT	1 cut(s)	41
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.