Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010592

Physical Location & Seq

Genomic Coordinates Forward (+)

25300561 .. 25303266

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAACCCTCGATTGATCAGCCTCTCAACGCTGGGCCGCATCGTCTCTCGATCCTCCTCTGGCCGCATCAGGCGCCGCTGGTAACGCCGCAGATCGCCGCATCAGTCGCCGCATCTGGAAGGAGGAGCAAGTCATTGCCGATCACCGCCACGCTCTCCAAGTTCTTCTCCGACGTTCTCCCTCAGAACCTCGCCGTCGACCTCGCGGACTTATTCGATGCCCCGAAACGGTGCGGTTTCAGTTCCGGAACCAGTGCTGTTCGGGTTTCGGAGGCACTGTCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.07

Weight (kDa)

9.62

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29490
rosa_chinensis	RchiOBHm_Chr1g0369811
rosa_roxburghii	Rroxscaffold_2G00084220 Rroxscaffold_4G00289570 Rroxscaffold_5G00344170 Rroxscaffold_5G00382040 Rroxscaffold_7G00200370
rosa_rugosa	Rorug01G0336200 Rorug05G0321700 Rorug05G0358200 Rorug07G0079600
rosa_samantha	Rh1AG189800 Rh2AG234700 Rh2AG505600 Rh2CG491000 Rh4DG108500 Rh5BG493100 Rh5CG517000 Rh6CG102900 Rh6DG094200 Rh6DG317700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	245
AciI	CCGC	9 cut(s)	38, 65, 77, 89, 99, 111, 147, 206, 234
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	46
Aor13HI	TCCGGA	1 cut(s)	245
AoxI	GGCC	2 cut(s)	35, 62
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	6 cut(s)	38, 65, 77, 89, 99, 111
BlsI	GCNGC	6 cut(s)	39, 66, 78, 90, 100, 112
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	75, 250
BmsI	GCATC	5 cut(s)	49, 76, 110, 122, 208
BsaHI	GRCGYC	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	2 cut(s)	47, 139
BseYI	CCCAGC	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	37, 64
BshNI	GGYRCC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	37, 64
Bsp13I	TCCGGA	1 cut(s)	245
Bsp143I	GATC	4 cut(s)	16, 51, 93, 141
BspACI	CCGC	9 cut(s)	38, 65, 77, 89, 99, 111, 147, 206, 234
BspANI	GGCC	2 cut(s)	37, 64
BspCNI	CTCAG	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	75, 250
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	4 cut(s)	16, 51, 93, 141
BssNI	GRCGYC	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	231, 279
BstACI	GRCGYC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	4 cut(s)	19, 54, 96, 144
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	4 cut(s)	16, 51, 93, 141
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 85, 107
BstUI	CGCG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	37, 64
BtsIMutI	CAGTG	2 cut(s)	259, 275
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	35
CviJI	RGCY	3 cut(s)	22, 37, 64
CviKI_1	RGCY	3 cut(s)	22, 37, 64
DdeI	CTNAG	1 cut(s)	183
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	4 cut(s)	18, 53, 95, 143
DpnII	GATC	4 cut(s)	16, 51, 93, 141
EaeI	YGGCCR	1 cut(s)	62
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	6 cut(s)	38, 65, 77, 89, 99, 111
Fsp4HI	GCNGC	6 cut(s)	38, 65, 77, 89, 99, 111
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	6 cut(s)	38, 65, 77, 89, 99, 111
GsaI	CCCAGC	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	37, 64
HapII	CCGG	1 cut(s)	246
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	3 cut(s)	172, 186, 271
Hpy188III	TCNNGA	3 cut(s)	49, 117, 246
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	2 cut(s)	176, 200
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	2 cut(s)	231, 279
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 85, 107
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	74
HspAI	GCGC	1 cut(s)	74
KasI	GGCGCC	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	16, 51, 93, 141
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	7 cut(s)	18, 46, 56, 65, 102, 259, 265
LweI	GCATC	5 cut(s)	49, 76, 110, 122, 208
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	18, 53, 95, 143
MboI	GATC	4 cut(s)	16, 51, 93, 141
MboII	GAAGA	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	9 cut(s)	19, 33, 65, 68, 117, 192, 200, 212, 265
MroI	TCCGGA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	73, 85, 107
NarI	GGCGCC	1 cut(s)	74
NdeII	GATC	4 cut(s)	16, 51, 93, 141
NlaIV	GGNNCC	2 cut(s)	75, 250
PkrI	GCNGC	6 cut(s)	39, 66, 78, 90, 100, 112
PluTI	GGCGCC	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	75, 250
PspPI	GGNCC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	197
SatI	GCNGC	6 cut(s)	38, 65, 77, 89, 99, 111
Sau3AI	GATC	4 cut(s)	16, 51, 93, 141
Sau96I	GGNCC	1 cut(s)	35
SetI	ASST	3 cut(s)	177, 192, 204
SfaNI	GCATC	5 cut(s)	49, 76, 110, 122, 208
SfoI	GGCGCC	1 cut(s)	75
SsiI	CCGC	9 cut(s)	38, 65, 77, 89, 99, 111, 147, 206, 234
SspDI	GGCGCC	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	231, 279
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	4 cut(s)	11, 50, 198, 216
TauI	GCSGC	6 cut(s)	40, 67, 79, 91, 101, 113
TscAI	CASTG	2 cut(s)	259, 282
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	259, 282
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.