Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010592

Physical Location & Seq

Genomic Coordinates Forward (+)

65767376 .. 65773545

Gene Structure 6170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG491000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGAACAGTTGTCGATCAACGTCGCAGTCTCCAAGTTCTTTTCCTACGTTCTCCCTCAGAACCTCACCGTCGACGTTGCAAAGTTCGAAGCTGCCATTTTGAAGTCGAATCGGAGCTACTCCGGAAGCAGTGTGCCTCGTGTCTTAAAGCAGGAAGCCAGTATTCTTAAAAAAGAAGAAGAAGGGACTGGAGAATCAGATAATTGTTCGTTTAGAGACTCCGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.35

Weight (kDa)

5.05

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29490
rosa_chinensis	RchiOBHm_Chr1g0369811
rosa_roxburghii	Rroxscaffold_2G00084220 Rroxscaffold_4G00289570 Rroxscaffold_5G00344170 Rroxscaffold_5G00382040 Rroxscaffold_7G00200370
rosa_rugosa	Rorug01G0336200 Rorug05G0321700 Rorug05G0358200 Rorug07G0079600
rosa_samantha	Rh1AG189800 Rh2AG234700 Rh2AG505600 Rh2CG491000 Rh4DG108500 Rh5BG493100 Rh5CG517000 Rh6CG102900 Rh6DG094200 Rh6DG317700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	72
AccIII	TCCGGA	2 cut(s)	122, 221
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	2 cut(s)	92, 117
AluI	AGCT	2 cut(s)	92, 117
Alw26I	GTCTC	3 cut(s)	34, 210, 219
Aor13HI	TCCGGA	2 cut(s)	122, 221
ApeKI	GCWGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	87
BauI	CACGAG	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	79
BcoDI	GTCTC	3 cut(s)	34, 210, 219
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	87
BsaWI	WCCGGW	2 cut(s)	122, 221
Bse1I	ACTGG	2 cut(s)	159, 193
BseAI	TCCGGA	2 cut(s)	122, 221
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	2 cut(s)	159, 193
BseXI	GCAGC	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	123, 222
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	3 cut(s)	34, 210, 219
BsmFI	GGGAC	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	87
Bsp13I	TCCGGA	2 cut(s)	122, 221
Bsp143I	GATC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	70
BspEI	TCCGGA	2 cut(s)	122, 221
BspT104I	TTCGAA	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	159, 193
BssMI	GATC	1 cut(s)	15
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	9, 70
BstBI	TTCGAA	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	3 cut(s)	34, 210, 219
BstMBI	GATC	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CviJI	RGCY	3 cut(s)	92, 117, 158
CviKI_1	RGCY	3 cut(s)	92, 117, 158
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
FaqI	GGGAC	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	210
HapII	CCGG	2 cut(s)	123, 222
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	3 cut(s)	109, 194, 218
HpaII	CCGG	2 cut(s)	123, 222
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	60, 114, 199
Hpy188III	TCNNGA	2 cut(s)	123, 222
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	3 cut(s)	26, 74, 77
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	9, 70
HpyCH4IV	ACGT	3 cut(s)	21, 48, 75
HpyCH4V	TGCA	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	3 cut(s)	21, 48, 75
Kpn2I	TCCGGA	2 cut(s)	122, 221
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	4 cut(s)	136, 137, 172, 174
Lsp1109I	GCAGC	1 cut(s)	79
MaeII	ACGT	3 cut(s)	21, 48, 75
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	188, 191
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	3 cut(s)	66, 74, 147
MroI	TCCGGA	2 cut(s)	122, 221
MseI	TTAA	2 cut(s)	146, 168
MspI	CCGG	2 cut(s)	123, 222
NdeII	GATC	1 cut(s)	15
NspV	TTCGAA	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	109, 194
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	146, 168
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	212
SetI	ASST	6 cut(s)	24, 51, 66, 78, 94, 119
SfuI	TTCGAA	1 cut(s)	87
SgeI	CNNG	7 cut(s)	46, 135, 150, 152, 164, 171, 201
SgrDI	CGTCGACG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	9, 70
TaiI	ACGT	3 cut(s)	24, 51, 78
TaqI	TCGA	4 cut(s)	14, 72, 87, 107
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	109, 194
Tru1I	TTAA	2 cut(s)	146, 168
Tru9I	TTAA	2 cut(s)	146, 168
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	92
TspRI	CASTG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.