Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010592

Physical Location & Seq

Genomic Coordinates Reverse (-)

10165876 .. 10167962

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAAACTCTCGATTGATCGGCCTCTCAACGGGGCCGCATCTCTCTCGATCCTTCATCGGTCTCTCGCTCCTCCTCGACCACGGATCTGCGCATCGGTCGATCCTCCTCTTATCACGGTGCCGCATTGTCTCTCAATCATCCTGCGGCCGCATCAATCGCCGCGAACGCCGCATCGGTCGCCGGCGGTAACTCCGCAGATCGCCGCATCGGTCGCCGCATCCGGAAGGAGGAGCAAGTCGATCTCTCTCCCTCGCTTCCGGATAATGAGACTTGCGAAAGTGAAGCAGGAGGAGATGTGTTGCTTGTGTACTTGGCTGGCCGACGGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.99

Weight (kDa)

11.1

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29490
rosa_chinensis	RchiOBHm_Chr1g0369811
rosa_roxburghii	Rroxscaffold_2G00084220 Rroxscaffold_4G00289570 Rroxscaffold_5G00344170 Rroxscaffold_5G00382040 Rroxscaffold_7G00200370
rosa_rugosa	Rorug01G0336200 Rorug05G0321700 Rorug05G0358200 Rorug07G0079600
rosa_samantha	Rh1AG189800 Rh2AG234700 Rh2AG505600 Rh2CG491000 Rh4DG108500 Rh5BG493100 Rh5CG517000 Rh6CG102900 Rh6DG094200 Rh6DG317700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	118
AccII	CGCG	1 cut(s)	163
AccIII	TCCGGA	2 cut(s)	221, 258
AclWI	GGATC	3 cut(s)	43, 92, 95
AcoI	YGGCCR	2 cut(s)	146, 318
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	29, 228
Alw26I	GTCTC	3 cut(s)	66, 134, 262
AlwI	GGATC	3 cut(s)	43, 92, 95
Aor13HI	TCCGGA	2 cut(s)	221, 258
AoxI	GGCC	4 cut(s)	20, 33, 146, 318
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BcoDI	GTCTC	3 cut(s)	66, 134, 262
BisI	GCNGC	8 cut(s)	36, 122, 146, 149, 161, 170, 204, 216
BlsI	GCNGC	8 cut(s)	37, 123, 147, 150, 162, 171, 205, 217
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	34, 120
BmsI	GCATC	6 cut(s)	47, 101, 160, 181, 215, 227
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	2 cut(s)	221, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 228
Bse118I	RCCGGY	1 cut(s)	181
BseAI	TCCGGA	2 cut(s)	221, 258
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	2 cut(s)	138, 218
BseLI	CCNNNNNNNGG	2 cut(s)	29, 228
BseRI	GAGGAG	5 cut(s)	60, 63, 96, 244, 305
BseX3I	CGGCCG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	163
Bsh1285I	CGRYCG	4 cut(s)	99, 149, 179, 213
BshFI	GGCC	4 cut(s)	22, 35, 148, 320
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	4 cut(s)	99, 149, 179, 213
BsiSI	CCGG	3 cut(s)	182, 222, 259
BslI	CCNNNNNNNGG	2 cut(s)	29, 228
BsmAI	GTCTC	3 cut(s)	66, 134, 262
BsnI	GGCC	4 cut(s)	22, 35, 148, 320
Bso31I	GGTCTC	1 cut(s)	66
Bsp13I	TCCGGA	2 cut(s)	221, 258
Bsp143I	GATC	6 cut(s)	16, 48, 84, 100, 198, 240
BspANI	GGCC	4 cut(s)	22, 35, 148, 320
BspEI	TCCGGA	2 cut(s)	221, 258
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	34, 120
BspPI	GGATC	3 cut(s)	43, 92, 95
BspT107I	GGYRCC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	6 cut(s)	16, 48, 84, 100, 198, 240
Bst4CI	ACNGT	2 cut(s)	118, 326
BstC8I	GCNNGC	2 cut(s)	183, 318
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	138, 218
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	6 cut(s)	19, 51, 87, 103, 201, 243
BstMAI	GTCTC	3 cut(s)	66, 134, 262
BstMBI	GATC	6 cut(s)	16, 48, 84, 100, 198, 240
BstMCI	CGRYCG	4 cut(s)	99, 149, 179, 213
BstMWI	GCNNNNNNNGC	6 cut(s)	157, 166, 169, 178, 212, 326
BstUI	CGCG	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZI	CGGCCG	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	22, 35, 148, 320
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	138, 218
Cac8I	GCNNGC	2 cut(s)	183, 318
CciNI	GCGGCCGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	309
CviJI	RGCY	5 cut(s)	22, 35, 148, 316, 320
CviKI_1	RGCY	5 cut(s)	22, 35, 148, 316, 320
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	6 cut(s)	18, 50, 86, 102, 200, 242
DpnII	GATC	6 cut(s)	16, 48, 84, 100, 198, 240
EaeI	YGGCCR	2 cut(s)	146, 318
EagI	CGGCCG	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	146
FaiI	YATR	1 cut(s)	331
Fnu4HI	GCNGC	8 cut(s)	36, 122, 146, 149, 161, 170, 204, 216
FokI	GGATG	2 cut(s)	125, 205
Fsp4HI	GCNGC	8 cut(s)	36, 122, 146, 149, 161, 170, 204, 216
FspI	TGCGCA	1 cut(s)	91
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	8 cut(s)	36, 122, 146, 149, 161, 170, 204, 216
HaeIII	GGCC	4 cut(s)	22, 35, 148, 320
HapII	CCGG	3 cut(s)	182, 222, 259
HhaI	GCGC	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HpaII	CCGG	3 cut(s)	182, 222, 259
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188III	TCNNGA	4 cut(s)	10, 46, 222, 259
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	2 cut(s)	62, 219
HpyCH4III	ACNGT	2 cut(s)	118, 326
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	6 cut(s)	157, 166, 169, 178, 212, 326
HspAI	GCGC	1 cut(s)	90
Kpn2I	TCCGGA	2 cut(s)	221, 258
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
Kzo9I	GATC	6 cut(s)	16, 48, 84, 100, 198, 240
LmnI	GCTCC	2 cut(s)	73, 231
LpnPI	CCDG	6 cut(s)	155, 195, 235, 272, 272, 302
LweI	GCATC	6 cut(s)	47, 101, 160, 181, 215, 227
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	6 cut(s)	18, 50, 86, 102, 200, 242
MboI	GATC	6 cut(s)	16, 48, 84, 100, 198, 240
MflI	RGATCY	1 cut(s)	84
MnlI	CCTC	8 cut(s)	33, 81, 84, 114, 117, 222, 261, 283
MreI	CGCCGGCG	1 cut(s)	181
MroI	TCCGGA	2 cut(s)	221, 258
MroNI	GCCGGC	1 cut(s)	181
MspI	CCGG	3 cut(s)	182, 222, 259
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	6 cut(s)	157, 166, 169, 178, 212, 326
NaeI	GCCGGC	1 cut(s)	183
NdeII	GATC	6 cut(s)	16, 48, 84, 100, 198, 240
NgoMIV	GCCGGC	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	34, 120
NotI	GCGGCCGC	1 cut(s)	146
NsbI	TGCGCA	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	183
PkrI	GCNGC	8 cut(s)	37, 123, 147, 150, 162, 171, 205, 217
PspN4I	GGNNCC	2 cut(s)	34, 120
PspPI	GGNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SatI	GCNGC	8 cut(s)	36, 122, 146, 149, 161, 170, 204, 216
Sau3AI	GATC	6 cut(s)	16, 48, 84, 100, 198, 240
Sau96I	GGNCC	1 cut(s)	33
SfaNI	GCATC	6 cut(s)	47, 101, 160, 181, 215, 227
SgrAI	CRCCGGYG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	118, 326
TaqI	TCGA	5 cut(s)	11, 47, 76, 99, 239
TaqII	GACCGA	4 cut(s)	48, 85, 165, 199
TatI	WGTACW	1 cut(s)	308
TauI	GCSGC	8 cut(s)	38, 124, 148, 151, 163, 172, 206, 218
TspDTI	ATGAA	2 cut(s)	17, 44
TspGWI	ACGGA	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.