FvH4_7g29640

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007825
Physical Location & Seq
Reverse (-)
21769204 .. 21774245
5042 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29640.t1

Sequence Viewer

Length: 1269 bp
ATGTTCATGATCGTGACGATGACGAAGAGTGTGAATGCAGCGGTGGCCGTCACGGTGGCGCTGCTCACGTGCTTGCCCTGGTGCATTTACTCGCAGCAGCCGCACCGCCTCATGGTGAACATGACCATCGTCCGAAATGCCTCGGCGCTCGGCGCTTTTTGCTTGGATGGGAGTTTGCCTGCGTATCACATTCACAGGGGGTTCGGCGCCGGAGCACGAAACTGGCTTTTACAGTTCGAGGGTGGAGGGTGGTGCAATGACATAGAGTCATGCTTGGAGAGGGCCAAAACAAGAAGAGGATCTACACGTCTTATGAACAAGTGGGAGGTCTTTTCTGGGATTCTAAGCAATAATGCCTCTCTTAATCCAGATTTTTACAATTGGAACCGTGTGAAGATTCGATACTGTGATGGAGCTTCATTTGCAGGAGATGCAGTATACAAGAATGGGACATCGTTGCTCTATTTCAGAGGGCAAAAGATATGGGAAGCCATTATTCTTGATCTTCTGCCCAAAGGTTTAGGAAAGGCGCGCAAGGCTTTGTTATCAGGTTGCTCTGCTGGGGGGTTAGCAGCATTTTTACATTGTGACGACTTCACTAAGTATGTACCAAGTAATGCCAGTGTTAAATGCTTGAGTGATGCTGGATTCTTTCTCGATGAAAGAGACATAGCTTTGAATCACACAATGAGGTCTTTCTACAAAGACCTTGTATCTTTACAGGGTGTACAAAAAAATCTGGATAAGAACTGCACCGGATCCCTTCCTTTTCCTGAGTTGTGCATTTTCCCACAGTATGCATTGAGATTCATCACACCACCATTTTTCATCTTGAACTCGGCTTATGACGTTTACCAGTTCCATCATGGATTAGTGCCCCCTTCAGCTGATCCACGCGGACACTGGAACCGTTGTAAACTGGATCCTGCAGCATGCAATCCTGCCCAGTTAACTGTATTGCAAGGTTTCAGGCGCGACATGCTTGTTGCTTTGGCATTGTTCTACAAGTACTCAGCAAGAGGAGGGATGTACATCAACTCATGCTTTGCTCACTGCCAAAGTGAGTCCCAGGACACATGGTTTGGGGTTGATTCTCCAAGAATACACAACAAGACCATTGCAGAAGCAGTAGGTGATTGGTACTTCAGCAGAAGGCTAACTAATAAGGAAGTTGACTGTGCATACCCTTGTGACACTACCTGCCATAACCTCATACCAGCTAACACAAGCTTAGGTCTTGCAAAAGATTTGGATTTAGTTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
PAE

Protein Analysis

423

Amino Acids

47.09

Weight (kDa)

8.47

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 34 - 402 1.7e-162 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1208
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 438
AccII CGCG 3 cut(s) 532, 897, 975
AciI CCGC 4 cut(s) 41, 101, 106, 897
AclWI GGATC 6 cut(s) 307, 753, 766, 884, 917, 930
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 867, 1129
AcvI CACGTG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 5 cut(s) 609, 729, 1010, 1031, 1142
AfiI CCNNNNNNNGG 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 3 cut(s) 679, 835, 1262
AhdI GACNNNNNGTC 1 cut(s) 265
AjiI CACGTC 1 cut(s) 308
AjnI CCWGG 2 cut(s) 77, 1068
AluBI AGCT 5 cut(s) 416, 674, 887, 1220, 1230
AluI AGCT 5 cut(s) 416, 674, 887, 1220, 1230
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 6 cut(s) 307, 753, 766, 884, 917, 930
AoxI GGCC 2 cut(s) 45, 282
ApeKI GCWGC 6 cut(s) 38, 61, 94, 97, 572, 929
ArsI GACNNNNNNTTYG 2 cut(s) 1064, 1096
AspLEI GCGC 7 cut(s) 61, 148, 155, 209, 532, 534, 975
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 2 cut(s) 127, 1145
BaeGI GKGCMC 1 cut(s) 879
BamHI GGATCC 2 cut(s) 758, 922
BanI GGYRCC 1 cut(s) 206
BarI GAAGNNNNNNTAC 4 cut(s) 286, 318, 386, 418
BbrPI CACGTG 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 6 cut(s) 48, 50, 106, 109, 584, 941
BccI CCATC 4 cut(s) 134, 161, 404, 870
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 79, 1070
BcoDI GTCTC 1 cut(s) 660
BfmI CTRYAG 1 cut(s) 927
BfoI RGCGCY 4 cut(s) 62, 149, 156, 210
BfuAI ACCTGC 1 cut(s) 1208
BisI GCNGC 7 cut(s) 39, 62, 95, 98, 101, 573, 930
BlsI GCNGC 7 cut(s) 40, 63, 96, 99, 102, 574, 931
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 2 cut(s) 79, 1070
BmeRI GACNNNNNGTC 1 cut(s) 265
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 5 cut(s) 208, 386, 760, 908, 924
BmrFI CCNGG 2 cut(s) 79, 1070
BmrI ACTGGG 1 cut(s) 940
BmsI GCATC 2 cut(s) 421, 631
BmuI ACTGGG 1 cut(s) 940
BoxI GACNNNNGTC 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 1231
BpuEI CTTGAG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 1031
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 77, 141, 1068
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 6 cut(s) 227, 621, 856, 908, 924, 946
Bse3DI GCAATG 2 cut(s) 262, 1116
Bse8I GATNNNNATC 1 cut(s) 1031
BseBI CCWGG 2 cut(s) 79, 1070
BseDI CCNNGG 3 cut(s) 77, 141, 1068
BseGI GGATG 2 cut(s) 172, 1032
BseJI GATNNNNATC 1 cut(s) 1031
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 2 cut(s) 262, 1116
BseMII CTCAG 2 cut(s) 765, 1026
BseNI ACTGG 6 cut(s) 227, 621, 856, 908, 924, 946
BsePI GCGCGC 1 cut(s) 530
BseRI GAGGAG 1 cut(s) 1035
BseSI GKGCMC 1 cut(s) 879
BseXI GCAGC 6 cut(s) 48, 50, 106, 109, 584, 941
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 736
Bsh1236I CGCG 3 cut(s) 532, 897, 975
BshFI GGCC 2 cut(s) 47, 284
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 2 cut(s) 210, 756
BslFI GGGAC 2 cut(s) 463, 1051
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 2 cut(s) 463, 1051
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 2 cut(s) 47, 284
Bsp1286I GDGCHC 2 cut(s) 217, 879
Bsp1407I TGTACA 2 cut(s) 727, 1029
Bsp143I GATC 6 cut(s) 9, 299, 502, 758, 889, 922
BspACI CCGC 4 cut(s) 41, 101, 106, 897
BspANI GGCC 2 cut(s) 47, 284
BspCNI CTCAG 2 cut(s) 766, 1025
BspFNI CGCG 3 cut(s) 532, 897, 975
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 5 cut(s) 208, 386, 760, 908, 924
BspMAI CTGCAG 1 cut(s) 931
BspMI ACCTGC 1 cut(s) 1208
BspPI GGATC 6 cut(s) 307, 753, 766, 884, 917, 930
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 262, 1116
BsrGI TGTACA 2 cut(s) 727, 1029
BsrI ACTGG 6 cut(s) 227, 621, 856, 908, 924, 946
BssECI CCNNGG 3 cut(s) 77, 141, 1068
BssHII GCGCGC 1 cut(s) 530
BssMI GATC 6 cut(s) 9, 299, 502, 758, 889, 922
BssNAI GTATAC 1 cut(s) 439
BssNI GRCGYC 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 439
Bst2UI CCWGG 2 cut(s) 79, 1070
Bst4CI ACNGT 8 cut(s) 55, 234, 389, 407, 795, 911, 955, 1178
Bst6I CTCTTC 2 cut(s) 20, 289
BstACI GRCGYC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 2 cut(s) 727, 1029
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 74, 180, 532, 934
BstDEI CTNAG 5 cut(s) 344, 600, 774, 1012, 1231
BstF5I GGATG 2 cut(s) 172, 1032
BstFNI CGCG 3 cut(s) 532, 897, 975
BstH2I RGCGCY 4 cut(s) 62, 149, 156, 210
BstHHI GCGC 7 cut(s) 61, 148, 155, 209, 532, 534, 975
BstKTI GATC 6 cut(s) 12, 302, 505, 761, 892, 925
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 6 cut(s) 9, 299, 502, 758, 889, 922
BstMWI GCNNNNNNNGC 8 cut(s) 44, 100, 152, 159, 422, 431, 536, 979
BstNI CCWGG 2 cut(s) 79, 1070
BstNSI RCATGY 2 cut(s) 936, 982
BstPAI GACNNNNGTC 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 77, 1068
BstSFI CTRYAG 1 cut(s) 927
BstSLI GKGCMC 1 cut(s) 879
BstUI CGCG 3 cut(s) 532, 897, 975
BstV1I GCAGC 6 cut(s) 48, 50, 106, 109, 584, 941
BstX2I RGATCY 3 cut(s) 299, 758, 922
BstYI RGATCY 3 cut(s) 299, 758, 922
BstZ17I GTATAC 1 cut(s) 439
BsuRI GGCC 2 cut(s) 47, 284
BtrI CACGTC 1 cut(s) 308
BtsCI GGATG 2 cut(s) 172, 1032
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 3 cut(s) 628, 901, 1051
BveI ACCTGC 1 cut(s) 1208
Cac8I GCNNGC 4 cut(s) 74, 180, 532, 934
CciI TCATGA 1 cut(s) 6
CfoI GCGC 7 cut(s) 61, 148, 155, 209, 532, 534, 975
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 5 cut(s) 608, 728, 1009, 1030, 1141
CviAII CATG 9 cut(s) 7, 112, 121, 270, 866, 933, 979, 1041, 1077
CviQI GTAC 5 cut(s) 608, 728, 1009, 1030, 1141
DdeI CTNAG 5 cut(s) 344, 600, 774, 1012, 1231
DinI GGCGCC 1 cut(s) 208
DpnI GATC 6 cut(s) 11, 301, 504, 760, 891, 924
DpnII GATC 6 cut(s) 9, 299, 502, 758, 889, 922
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 20, 289
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 2 cut(s) 20, 289
Eco57I CTGAAG 2 cut(s) 867, 1129
Eco72I CACGTG 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 77, 1068
EcoT22I ATGCAT 1 cut(s) 802
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
FaeI CATG 9 cut(s) 10, 115, 124, 273, 869, 936, 982, 1044, 1080
FaqI GGGAC 2 cut(s) 463, 1051
FatI CATG 9 cut(s) 6, 111, 120, 269, 865, 932, 978, 1040, 1076
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 7 cut(s) 39, 62, 95, 98, 101, 573, 930
FokI GGATG 2 cut(s) 179, 1039
Fsp4HI GCNGC 7 cut(s) 39, 62, 95, 98, 101, 573, 930
GlaI GCGC 7 cut(s) 60, 147, 154, 208, 531, 533, 974
GluI GCNGC 7 cut(s) 39, 62, 95, 98, 101, 573, 930
GsaI CCCAGC 1 cut(s) 564
HaeII RGCGCY 4 cut(s) 62, 149, 156, 210
HaeIII GGCC 2 cut(s) 47, 284
HapII CCGG 2 cut(s) 210, 756
HhaI GCGC 7 cut(s) 61, 148, 155, 209, 532, 534, 975
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 9 cut(s) 10, 115, 124, 273, 869, 936, 982, 1044, 1080
Hin6I GCGC 7 cut(s) 59, 146, 153, 207, 530, 532, 973
HinP1I GCGC 7 cut(s) 59, 146, 153, 207, 530, 532, 973
HincII GTYRAC 2 cut(s) 951, 1174
HindII GTYRAC 2 cut(s) 951, 1174
HindIII AAGCTT 1 cut(s) 1228
HinfI GANTC 8 cut(s) 266, 340, 397, 648, 679, 807, 1064, 1091
HpaI GTTAAC 1 cut(s) 951
HpaII CCGG 2 cut(s) 210, 756
HphI GGTGA 2 cut(s) 127, 1145
Hpy166II GTNNAC 7 cut(s) 118, 439, 728, 853, 917, 951, 1174
Hpy188I TCNGA 2 cut(s) 134, 470
Hpy188III TCNNGA 8 cut(s) 7, 13, 368, 500, 656, 740, 773, 832
Hpy8I GTNNAC 7 cut(s) 118, 439, 728, 853, 917, 951, 1174
HpyAV CCTTC 3 cut(s) 773, 891, 1146
HpyCH4III ACNGT 8 cut(s) 55, 234, 389, 407, 795, 911, 955, 1178
HpyCH4IV ACGT 3 cut(s) 68, 307, 849
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 100, 152, 159, 422, 431, 536, 979
HpyF3I CTNAG 5 cut(s) 344, 600, 774, 1012, 1231
HpySE526I ACGT 3 cut(s) 68, 307, 849
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 9 cut(s) 10, 115, 124, 273, 869, 936, 982, 1044, 1080
HspAI GCGC 7 cut(s) 59, 146, 153, 207, 530, 532, 973
KasI GGCGCC 1 cut(s) 206
KspAI GTTAAC 1 cut(s) 951
Kzo9I GATC 6 cut(s) 9, 299, 502, 758, 889, 922
LmnI GCTCC 2 cut(s) 212, 413
Lsp1109I GCAGC 6 cut(s) 48, 50, 106, 109, 584, 941
LweI GCATC 2 cut(s) 421, 631
MaeII ACGT 3 cut(s) 68, 307, 849
MaeIII GTNAC 4 cut(s) 13, 49, 587, 1190
MalI GATC 6 cut(s) 11, 301, 504, 760, 891, 924
MboI GATC 6 cut(s) 9, 299, 502, 758, 889, 922
MboII GAAGA 4 cut(s) 37, 306, 406, 497
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 3 cut(s) 299, 758, 922
MhlI GDGCHC 2 cut(s) 217, 879
MluCI AATT 1 cut(s) 379
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 275, 1073
Mph1103I ATGCAT 1 cut(s) 802
MseI TTAA 3 cut(s) 363, 627, 950
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 2 cut(s) 41, 887
MspI CCGG 2 cut(s) 210, 756
MspR9I CCNGG 2 cut(s) 79, 1070
MunI CAATTG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 2 cut(s) 79, 1070
MvnI CGCG 3 cut(s) 532, 897, 975
MwoI GCNNNNNNNGC 8 cut(s) 44, 100, 152, 159, 422, 431, 536, 979
NarI GGCGCC 1 cut(s) 207
NdeII GATC 6 cut(s) 9, 299, 502, 758, 889, 922
NlaIII CATG 9 cut(s) 10, 115, 124, 273, 869, 936, 982, 1044, 1080
NlaIV GGNNCC 5 cut(s) 208, 386, 760, 908, 924
NmeAIII GCCGAG 3 cut(s) 122, 129, 818
NmuCI GTSAC 4 cut(s) 13, 49, 587, 1190
NsiI ATGCAT 1 cut(s) 802
NspI RCATGY 2 cut(s) 936, 982
PaeI GCATGC 1 cut(s) 936
PagI TCATGA 1 cut(s) 6
PauI GCGCGC 1 cut(s) 530
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 6 cut(s) 340, 397, 648, 679, 807, 1091
PkrI GCNGC 7 cut(s) 40, 63, 96, 99, 102, 574, 931
PleI GAGTC 2 cut(s) 274, 1072
PluTI GGCGCC 1 cut(s) 210
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
PpsI GAGTC 2 cut(s) 274, 1072
Ppu21I YACGTR 1 cut(s) 69
PshAI GACNNNNGTC 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 77, 1068
PspCI CACGTG 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 77, 1068
PspN4I GGNNCC 5 cut(s) 208, 386, 760, 908, 924
PspPI GGNCC 1 cut(s) 282
PstI CTGCAG 1 cut(s) 931
PsuI RGATCY 3 cut(s) 299, 758, 922
PteI GCGCGC 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 5 cut(s) 609, 729, 1010, 1031, 1142
RsaNI GTAC 5 cut(s) 608, 728, 1009, 1030, 1141
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 3 cut(s) 363, 627, 950
SatI GCNGC 7 cut(s) 39, 62, 95, 98, 101, 573, 930
Sau3AI GATC 6 cut(s) 9, 299, 502, 758, 889, 922
Sau96I GGNCC 1 cut(s) 282
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 2 cut(s) 275, 1073
ScrFI CCNGG 2 cut(s) 79, 1070
SduI GDGCHC 2 cut(s) 217, 879
SfaNI GCATC 2 cut(s) 421, 631
SfcI CTRYAG 1 cut(s) 927
SfoI GGCGCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 634
SmoI CTYRAG 1 cut(s) 634
SphI GCATGC 1 cut(s) 936
Sse9I AATT 1 cut(s) 379
SsiI CCGC 4 cut(s) 41, 101, 106, 897
SspDI GGCGCC 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 77, 1068
TaaI ACNGT 8 cut(s) 55, 234, 389, 407, 795, 911, 955, 1178
TaiI ACGT 3 cut(s) 71, 310, 852
TaqI TCGA 3 cut(s) 237, 400, 657
TasI AATT 1 cut(s) 379
TatI WGTACW 3 cut(s) 727, 1008, 1029
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 6 cut(s) 340, 397, 648, 679, 807, 1091
Tru1I TTAA 3 cut(s) 363, 627, 950
Tru9I TTAA 3 cut(s) 363, 627, 950
TscAI CASTG 3 cut(s) 628, 908, 1058
TseFI GTSAC 4 cut(s) 13, 49, 587, 1190
TseI GCWGC 6 cut(s) 38, 61, 94, 97, 572, 929
Tsp45I GTSAC 4 cut(s) 13, 49, 587, 1190
TspDTI ATGAA 5 cut(s) 329, 408, 675, 799, 817
TspRI CASTG 3 cut(s) 628, 908, 1058
XceI RCATGY 2 cut(s) 936, 982
XcmI CCANNNNNNNNNTGG 2 cut(s) 863, 900
XmiI GTMKAC 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 1010
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.