Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007825

Physical Location & Seq

Genomic Coordinates Reverse (-)

25429387 .. 25435698

Gene Structure 6312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24910.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATGCATGTCAATGCAGTCCTGGTCGCCATCACGACGGCTCTGCTAGCGTGCGCTCCTCGCCGCATTTACGCCGAGGAGCGGCGCCTCACGGTGAAGATGACCATTGTCCAACGCGGTTCCGCTCTCGGAGCTTTTTGCTTGGATGGGAGTTTGCCTGCGTATCATCTGCACAGAGGATTCGGGGCCGGAGCAAGAAACTGGCTTTTGCAGTTTGAGGGTGGAGGGTGGTGCAATGATGTAAAATCATGCTCTGACAGAGCCAGCACGCGAAGAGGATCAACACGTTATATGACCAAGTGGGAAGTCTTTTCTGGAATCCTCAGCAATAATGCATCTCTTAATCCAGATTTTTACAACTGGAACCGAGTGAAGCTTAGATATTGTGATGGAGCTTCATTTGCTGGAGATGCAGTAGTTAATAACGGGACATCATTGCTCTATTTTAGAGGGCAAAAGATTTGGGAAGCAATCATCCTTGATCTTCTGCCGAAAGGTTTAGGACAAGCACGTAAGGCTTTGCTATCAGGTTGTTCTGCTGGGGGTTTAGCATCGTTTTTGCACTGTAACAGCTTCACTAACTACTTACCAAGCAATACCAGTGTGAAATGCTTGAGTGACGCCGGATTCTTTCTCGATGAACGAGATATAACTTTGAACCACACCATGAGGTATTTCGTAAAAGATCTTGTGACTCTACAGGGAGTAGAGAAGAATCTGGACGAGAACTGCACGAAGAATTCCATTTATCCCGAGCTGTGTTTCTTTCCACAGTATGCATTGAAGTTCATCACAACACCTTTCTTCATATTGAACTCAGCCTATGATGTTTACCAGTTCCATCACATATTGGTGCCGGCCTCAGCAGATCCGCACGGACATTGGAACCGTTGCAAATTGAATCCGGCAGCGTGCAACCCTGAACAGTTAAATACATTGCAAGAATACAGGCGCGATATGATCGTTGCAATGGGACTGTTCTACAAATATTCGAGAAGCGGAGGGATTTTCCTCAATTCATGTTTTGCTCATTGCCAAAGTGAGTCTCAGGACACATGGTTTGGTGATGATTCTCCAAGGGTACATAATAAGACAATTGCAGGAGCAGTGGGTGACTGGTACTTCAGCAGAAGGGTAACAAAGGAAATTGACTGCCCATATCCTTGTGACACTACCTGCCATAACCTCATCCCATCAGCTCAGGCCGCTTTAGAAGATACAAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

410

Amino Acids

45.82

Weight (kDa)

8.38

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23870 AT5G23870 AT5G23870 AT5G23870
fragaria_vesca	FvH4_7g29640 FvH4_7g29640 FvH4_7g29640
malus_domestica	MD01G1203300.v1.1 MD07G1272700.v1.1
prunus_persica	Prupe.1G518100_v2.0.a1 Prupe.2G296000_v2.0.a1 Prupe.2G296000_v2.0.a1
pyrus_communis	pycom07g24910
rosa_chinensis	RchiOBHm_Chr1g0377651
rosa_laevigata	RLG00000026508
rosa_multiflora	Rmu_co8476537.1_g000001 Rmu_sc0002832.1_g000014
rosa_roxburghii	Rroxscaffold_4G00281140
rosa_rugosa	Rorug01G0403900
rosa_samantha	Rh1AG428600 Rh1BG380800 Rh1CG394800 Rh1DG411800
rosa_wichuraiana	Rw1G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1184
AccB1I	GGYRCC	2 cut(s)	84, 853
AccBSI	CCGCTC	2 cut(s)	82, 125
AccII	CGCG	3 cut(s)	117, 271, 954
AciI	CCGC	7 cut(s)	64, 82, 117, 123, 872, 999, 1206
AclWI	GGATC	2 cut(s)	286, 863
AcsI	RAATTY	1 cut(s)	739
AcuI	CTGAAG	1 cut(s)	1108
AcyI	GRCGYC	2 cut(s)	85, 621
AfaI	GTAC	2 cut(s)	1083, 1121
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	658, 784, 814, 901
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	7 cut(s)	134, 376, 395, 573, 757, 1199, 1227
AluI	AGCT	7 cut(s)	134, 376, 395, 573, 757, 1199, 1227
Alw26I	GTCTC	1 cut(s)	1050
AlwI	GGATC	2 cut(s)	286, 863
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	3 cut(s)	186, 858, 1203
ApeKI	GCWGC	1 cut(s)	908
ApoI	RAATTY	1 cut(s)	739
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AspLEI	GCGC	3 cut(s)	56, 87, 954
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	106, 1076, 1124
AsuNHI	GCTAGC	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	752
BanI	GGYRCC	2 cut(s)	84, 853
BbvCI	CCTCAGC	2 cut(s)	323, 862
BbvI	GCAGC	1 cut(s)	920
BccI	CCATC	5 cut(s)	38, 140, 383, 849, 1201
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	1050
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	698
BfoI	RGCGCY	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	1184
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	4 cut(s)	64, 83, 909, 1206
BlsI	GCNGC	4 cut(s)	65, 84, 910, 1207
Bme1390I	CCNGG	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	6 cut(s)	86, 121, 187, 365, 855, 887
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	344, 400, 560
BmtI	GCTAGC	1 cut(s)	50
BoxI	GACNNNNGTC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	3 cut(s)	323, 862, 1200
BpuEI	CTTGAG	1 cut(s)	634
BsaAI	YACGTR	1 cut(s)	512
BsaHI	GRCGYC	2 cut(s)	85, 621
BsaJI	CCNNGG	2 cut(s)	75, 1076
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	856
Bse1I	ACTGG	5 cut(s)	206, 365, 600, 835, 1121
Bse3DI	GCAATG	5 cut(s)	241, 434, 935, 975, 1030
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	75, 1076
BseGI	GGATG	3 cut(s)	151, 474, 1188
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	5 cut(s)	241, 434, 935, 975, 1030
BseMII	CTCAG	5 cut(s)	337, 831, 876, 1061, 1214
BseNI	ACTGG	5 cut(s)	206, 365, 600, 835, 1121
BseRI	GAGGAG	2 cut(s)	48, 92
BseXI	GCAGC	1 cut(s)	920
BseYI	CCCAGC	1 cut(s)	539
BsgI	GTGCAG	2 cut(s)	155, 715
Bsh1236I	CGCG	3 cut(s)	117, 271, 954
BshFI	GGCC	3 cut(s)	188, 860, 1205
BshNI	GGYRCC	2 cut(s)	84, 853
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	4 cut(s)	189, 624, 857, 905
BslFI	GGGAC	2 cut(s)	442, 987
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	1050
BsmFI	GGGAC	2 cut(s)	442, 987
BsnI	GGCC	3 cut(s)	188, 860, 1205
BsoBI	CYCGRG	1 cut(s)	752
Bsp143I	GATC	5 cut(s)	278, 481, 685, 868, 960
BspACI	CCGC	7 cut(s)	64, 82, 117, 123, 872, 999, 1206
BspANI	GGCC	3 cut(s)	188, 860, 1205
BspCNI	CTCAG	5 cut(s)	336, 830, 875, 1060, 1213
BspFNI	CGCG	3 cut(s)	117, 271, 954
BspLI	GGNNCC	6 cut(s)	86, 121, 187, 365, 855, 887
BspMI	ACCTGC	1 cut(s)	1184
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	286, 863
BspT107I	GGYRCC	2 cut(s)	84, 853
BsrBI	CCGCTC	2 cut(s)	82, 125
BsrDI	GCAATG	5 cut(s)	241, 434, 935, 975, 1030
BsrFI	RCCGGY	1 cut(s)	856
BsrI	ACTGG	5 cut(s)	206, 365, 600, 835, 1121
BssAI	RCCGGY	1 cut(s)	856
BssECI	CCNNGG	2 cut(s)	75, 1076
BssMI	GATC	5 cut(s)	278, 481, 685, 868, 960
BssNI	GRCGYC	2 cut(s)	85, 621
BssT1I	CCWWGG	1 cut(s)	1076
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	6 cut(s)	94, 566, 774, 890, 927, 978
Bst6I	CTCTTC	1 cut(s)	268
BstACI	GRCGYC	2 cut(s)	85, 621
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	7 cut(s)	48, 52, 159, 265, 269, 858, 913
BstDEI	CTNAG	6 cut(s)	323, 377, 817, 862, 1047, 1200
BstF5I	GGATG	3 cut(s)	151, 474, 1188
BstFNI	CGCG	3 cut(s)	117, 271, 954
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	3 cut(s)	56, 87, 954
BstKTI	GATC	5 cut(s)	281, 484, 688, 871, 963
BstMAI	GTCTC	1 cut(s)	1050
BstMBI	GATC	5 cut(s)	278, 481, 685, 868, 960
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 60, 131, 401, 410, 515, 1205
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	11
BstPAI	GACNNNNGTC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	698
BstUI	CGCG	3 cut(s)	117, 271, 954
BstV1I	GCAGC	1 cut(s)	920
BstX2I	RGATCY	2 cut(s)	685, 868
BstYI	RGATCY	2 cut(s)	685, 868
BsuRI	GGCC	3 cut(s)	188, 860, 1205
BtsCI	GGATG	3 cut(s)	151, 474, 1188
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	3 cut(s)	562, 607, 1113
BveI	ACCTGC	1 cut(s)	1184
Cac8I	GCNNGC	7 cut(s)	48, 52, 159, 265, 269, 858, 913
CfoI	GCGC	3 cut(s)	56, 87, 954
Cfr10I	RCCGGY	1 cut(s)	856
Cfr13I	GGNCC	1 cut(s)	186
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	1082, 1120
CviAII	CATG	5 cut(s)	8, 249, 667, 1020, 1056
CviQI	GTAC	2 cut(s)	1082, 1120
DdeI	CTNAG	6 cut(s)	323, 377, 817, 862, 1047, 1200
DinI	GGCGCC	1 cut(s)	86
DpnI	GATC	5 cut(s)	280, 483, 687, 870, 962
DpnII	GATC	5 cut(s)	278, 481, 685, 868, 960
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	1076
Eco57I	CTGAAG	1 cut(s)	1108
Eco88I	CYCGRG	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	1076
EcoT22I	ATGCAT	3 cut(s)	9, 337, 781
EgeI	GGCGCC	1 cut(s)	86
EheI	GGCGCC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	1076
FaeI	CATG	5 cut(s)	11, 252, 670, 1023, 1059
FaqI	GGGAC	2 cut(s)	442, 987
FatI	CATG	5 cut(s)	7, 248, 666, 1019, 1055
Fnu4HI	GCNGC	4 cut(s)	64, 83, 909, 1206
FokI	GGATG	3 cut(s)	158, 461, 1175
Fsp4HI	GCNGC	4 cut(s)	64, 83, 909, 1206
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	3 cut(s)	55, 86, 953
GluI	GCNGC	4 cut(s)	64, 83, 909, 1206
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	188, 860, 1205
HapII	CCGG	4 cut(s)	189, 624, 857, 905
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	3 cut(s)	56, 87, 954
Hin1I	GRCGYC	2 cut(s)	85, 621
Hin1II	CATG	5 cut(s)	11, 252, 670, 1023, 1059
Hin6I	GCGC	3 cut(s)	54, 85, 952
HinP1I	GCGC	3 cut(s)	54, 85, 952
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	8 cut(s)	180, 318, 627, 694, 715, 901, 1043, 1070
HpaII	CCGG	4 cut(s)	189, 624, 857, 905
HphI	GGTGA	3 cut(s)	106, 1076, 1124
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	2 cut(s)	131, 256
Hpy188III	TCNNGA	8 cut(s)	34, 315, 347, 635, 719, 752, 993, 1049
Hpy8I	GTNNAC	1 cut(s)	832
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	1125
HpyCH4III	ACNGT	6 cut(s)	94, 566, 774, 890, 927, 978
HpyCH4IV	ACGT	2 cut(s)	286, 511
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 60, 131, 401, 410, 515, 1205
HpyF3I	CTNAG	6 cut(s)	323, 377, 817, 862, 1047, 1200
HpySE526I	ACGT	2 cut(s)	286, 511
Hsp92I	GRCGYC	2 cut(s)	85, 621
Hsp92II	CATG	5 cut(s)	11, 252, 670, 1023, 1059
HspAI	GCGC	3 cut(s)	54, 85, 952
KasI	GGCGCC	1 cut(s)	84
KroI	GCCGGC	1 cut(s)	856
KroNI	GCCGGC	1 cut(s)	858
Kzo9I	GATC	5 cut(s)	278, 481, 685, 868, 960
LmnI	GCTCC	6 cut(s)	61, 79, 131, 191, 392, 1103
Lsp1109I	GCAGC	1 cut(s)	920
LweI	GCATC	3 cut(s)	344, 400, 560
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	2 cut(s)	286, 511
MaeIII	GTNAC	6 cut(s)	566, 617, 691, 1112, 1135, 1166
MalI	GATC	5 cut(s)	280, 483, 687, 870, 962
MbiI	CCGCTC	2 cut(s)	82, 125
MboI	GATC	5 cut(s)	278, 481, 685, 868, 960
MboII	GAAGA	7 cut(s)	109, 285, 476, 724, 748, 796, 1226
MfeI	CAATTG	1 cut(s)	1095
MflI	RGATCY	2 cut(s)	685, 868
MluCI	AATT	5 cut(s)	739, 896, 1015, 1095, 1146
Mly113I	GGCGCC	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	688, 1052
MmeI	TCCRAC	1 cut(s)	136
Mph1103I	ATGCAT	3 cut(s)	9, 337, 781
MroNI	GCCGGC	1 cut(s)	856
MseI	TTAA	3 cut(s)	342, 420, 929
MslI	CAYNNNNRTG	2 cut(s)	12, 851
MspI	CCGG	4 cut(s)	189, 624, 857, 905
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	1095
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	3 cut(s)	117, 271, 954
MwoI	GCNNNNNNNGC	7 cut(s)	47, 60, 131, 401, 410, 515, 1205
NaeI	GCCGGC	1 cut(s)	858
NarI	GGCGCC	1 cut(s)	85
NdeII	GATC	5 cut(s)	278, 481, 685, 868, 960
NgoMIV	GCCGGC	1 cut(s)	856
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	5 cut(s)	11, 252, 670, 1023, 1059
NlaIV	GGNNCC	6 cut(s)	86, 121, 187, 365, 855, 887
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	4 cut(s)	617, 691, 1112, 1166
NsiI	ATGCAT	3 cut(s)	9, 337, 781
NspI	RCATGY	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	858
PfeI	GAWTC	6 cut(s)	180, 318, 627, 715, 901, 1070
PkrI	GCNGC	4 cut(s)	65, 84, 910, 1207
PleI	GAGTC	2 cut(s)	688, 1051
PluTI	GGCGCC	1 cut(s)	88
PpsI	GAGTC	2 cut(s)	688, 1051
Ppu21I	YACGTR	1 cut(s)	512
PshAI	GACNNNNGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	6 cut(s)	86, 121, 187, 365, 855, 887
PspPI	GGNCC	1 cut(s)	186
PsuI	RGATCY	2 cut(s)	685, 868
RsaI	GTAC	2 cut(s)	1083, 1121
RsaNI	GTAC	2 cut(s)	1082, 1120
RseI	CAYNNNNRTG	2 cut(s)	12, 851
SaqAI	TTAA	3 cut(s)	342, 420, 929
SatI	GCNGC	4 cut(s)	64, 83, 909, 1206
Sau3AI	GATC	5 cut(s)	278, 481, 685, 868, 960
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	2 cut(s)	688, 1052
ScrFI	CCNGG	1 cut(s)	23
SfaNI	GCATC	3 cut(s)	344, 400, 560
SfcI	CTRYAG	1 cut(s)	698
SfoI	GGCGCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	2 cut(s)	12, 851
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	5 cut(s)	739, 896, 1015, 1095, 1146
SsiI	CCGC	7 cut(s)	64, 82, 117, 123, 872, 999, 1206
SspDI	GGCGCC	1 cut(s)	84
SspI	AATATT	1 cut(s)	989
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	1076
TaaI	ACNGT	6 cut(s)	94, 566, 774, 890, 927, 978
TaiI	ACGT	2 cut(s)	289, 514
TaqI	TCGA	2 cut(s)	636, 992
TasI	AATT	5 cut(s)	739, 896, 1015, 1095, 1146
TauI	GCSGC	3 cut(s)	66, 85, 1208
TfiI	GAWTC	6 cut(s)	180, 318, 627, 715, 901, 1070
Tru1I	TTAA	3 cut(s)	342, 420, 929
Tru9I	TTAA	3 cut(s)	342, 420, 929
TscAI	CASTG	3 cut(s)	569, 607, 1113
TseFI	GTSAC	4 cut(s)	617, 691, 1112, 1166
TseI	GCWGC	1 cut(s)	908
Tsp45I	GTSAC	4 cut(s)	617, 691, 1112, 1166
TspDTI	ATGAA	5 cut(s)	387, 654, 778, 796, 1008
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	3 cut(s)	569, 607, 1113
XapI	RAATTY	1 cut(s)	739
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	3 cut(s)	9, 337, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.