Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007825

Physical Location & Seq

Genomic Coordinates Forward (+)

3498254 .. 3503698

Gene Structure 5445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGTTACTGAAATGAAGACGCCGATGACGAAGAGCGTGAATGCGGTGGTAGCAGTCACGTTGGCGCTGCTAACGTGCGCGCCTTGGTGCATTTACTCACAGCAGCCGCACCGTCTTGTGGTGAACATGACCACCGTCCGAAATGCCCCCGCTCTCGGCGCTTTTTGCTTGGATGGGAGTTTGCCTGCGTATCATATTCACAGAGGATTCGGCGCCGGAGCAAGAAACTGGCTTTTACAGTTTGAGGGTGGAGGGTGGTGTAATGATATAGAGTCTTGCTTGGAGAGGGCGACAACAAGAAGAGGTTCTACACGTCTTATGAACAAGCGGGAGGTCTTTTCTGGGATTCTAAGTAATAATGCTTCTCTTAATCCAGATTTTTACAATTGGAACCGTGTAAAGATTCGATATTGTGATGGAGCTTCATTTGCCGGAGACGCAGTGTATAAGAATGGGACAACGTTGCTCTATTTCAGAGGGCAAAAGATTTGGGAAGCCATCATTCTTGATCTTCTGCCTAAAGGTTTAGGAAAGGCACGTAAGGCTTTGTTATCAGGTTGCTCTGCTGGGGGTTTAGCAGCATTTTTACATTGTGACGACTTCACTAAGTATGTACCAAGTAATGCCAGTGTAAAATGCTTGAGTGATGCTGGATTCTTTCTTGATGAAAGAGACATAGGTTTGAATCACACAATGAGGTCTTTCTATAAAGACCTTGTCTCTCTACAGGGTGTAGAAAAGAATCTGGATAAGAACTGCACCGGATCCCTCCCTTTTCCTGAGTTGTGTATTTTCCCACAGTATGCATTGAGATTCATCACACCGCCTTTTTTCATCTTGAACTCGGCTTATGATGTTTACCAGTTCCATCATGGATTGGTGCCACCTTCAGCTGATCCACGCGGACACTGGAACCATTGCAAACTGGATCCGGCAGCATGCAATCCTGCTCAGTTAAATGTACTGCAAGGTTTCAGGCACGACATGCTTGTTGCTTTGGCATTGTTCTACAAGTACTCGGCAAGAGGGGGATGTACATCAACTCATGCTTTGCTCACTGCCAAAGTGAGTCCCAGGACACATGGTTTGGGGTTGATTCTCCAAGAATACACAACAAGACCATTGCAGAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

378

Amino Acids

41.88

Weight (kDa)

9.07

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	36 - 343	1.4e-131	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23870 AT5G23870 AT5G23870 AT5G23870
fragaria_vesca	FvH4_7g29640 FvH4_7g29640 FvH4_7g29640
malus_domestica	MD01G1203300.v1.1 MD07G1272700.v1.1
prunus_persica	Prupe.1G518100_v2.0.a1 Prupe.2G296000_v2.0.a1 Prupe.2G296000_v2.0.a1
pyrus_communis	pycom07g24910
rosa_chinensis	RchiOBHm_Chr1g0377651
rosa_laevigata	RLG00000026508
rosa_multiflora	Rmu_co8476537.1_g000001 Rmu_sc0002832.1_g000014
rosa_roxburghii	Rroxscaffold_4G00281140
rosa_rugosa	Rorug01G0403900
rosa_samantha	Rh1AG428600 Rh1BG380800 Rh1CG394800 Rh1DG411800
rosa_wichuraiana	Rw1G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	212, 880
AccBSI	CCGCTC	1 cut(s)	152
AccII	CGCG	2 cut(s)	80, 903
AciI	CCGC	6 cut(s)	44, 107, 150, 328, 824, 903
AclI	AACGTT	1 cut(s)	461
AclWI	GGATC	5 cut(s)	759, 772, 890, 923, 936
AcuI	CTGAAG	1 cut(s)	873
AcyI	GRCGYC	2 cut(s)	20, 213
AfaI	GTAC	4 cut(s)	615, 963, 1016, 1036
AfiI	CCNNNNNNNGG	2 cut(s)	118, 155
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	685, 841
AjiI	CACGTC	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	1073
AluBI	AGCT	3 cut(s)	422, 893, 1132
AluI	AGCT	3 cut(s)	422, 893, 1132
Alw26I	GTCTC	3 cut(s)	429, 666, 724
AlwI	GGATC	5 cut(s)	759, 772, 890, 923, 936
AlwNI	CAGNNNCTG	1 cut(s)	1132
ApeKI	GCWGC	4 cut(s)	67, 103, 578, 935
ArsI	GACNNNNNNTTYG	2 cut(s)	1069, 1101
Asp700I	GAANNNNTTC	1 cut(s)	304
AspLEI	GCGC	5 cut(s)	67, 80, 82, 161, 215
AsuHPI	GGTGA	1 cut(s)	133
BamHI	GGATCC	2 cut(s)	764, 928
BanI	GGYRCC	2 cut(s)	212, 880
BarI	GAAGNNNNNNTAC	4 cut(s)	292, 324, 346, 378
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	4 cut(s)	54, 115, 590, 947
BccI	CCATC	4 cut(s)	167, 410, 506, 876
BciT130I	CCWGG	1 cut(s)	1075
BcoDI	GTCTC	3 cut(s)	429, 666, 724
BfmI	CTRYAG	2 cut(s)	725, 1133
BfoI	RGCGCY	3 cut(s)	68, 162, 216
BisI	GCNGC	5 cut(s)	68, 104, 107, 579, 936
BlsI	GCNGC	5 cut(s)	69, 105, 108, 580, 937
BmcAI	AGTACT	1 cut(s)	1016
Bme1390I	CCNGG	1 cut(s)	1075
BmgBI	CACGTC	1 cut(s)	314
BmiI	GGNNCC	6 cut(s)	214, 392, 766, 882, 914, 930
BmrFI	CCNGG	1 cut(s)	1075
BmsI	GCATC	1 cut(s)	637
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	661
BsaAI	YACGTR	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	1036
BsaHI	GRCGYC	2 cut(s)	20, 213
BsaJI	CCNNGG	2 cut(s)	83, 1073
BsaWI	WCCGGW	1 cut(s)	761
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 155
Bse1I	ACTGG	5 cut(s)	233, 627, 862, 914, 930
Bse3DI	GCAATG	2 cut(s)	916, 1121
Bse8I	GATNNNNATC	1 cut(s)	1036
BseBI	CCWGG	1 cut(s)	1075
BseDI	CCNNGG	2 cut(s)	83, 1073
BseGI	GGATG	2 cut(s)	178, 1037
BseJI	GATNNNNATC	1 cut(s)	1036
BseLI	CCNNNNNNNGG	2 cut(s)	118, 155
BseMI	GCAATG	2 cut(s)	916, 1121
BseMII	CTCAG	2 cut(s)	771, 965
BseNI	ACTGG	5 cut(s)	233, 627, 862, 914, 930
BsePI	GCGCGC	1 cut(s)	78
BseXI	GCAGC	4 cut(s)	54, 115, 590, 947
BseYI	CCCAGC	1 cut(s)	566
BsgI	GTGCAG	1 cut(s)	742
Bsh1236I	CGCG	2 cut(s)	80, 903
BshNI	GGYRCC	2 cut(s)	212, 880
BsiSI	CCGG	4 cut(s)	216, 432, 762, 932
BslFI	GGGAC	2 cut(s)	469, 1056
BslI	CCNNNNNNNGG	2 cut(s)	118, 155
BsmAI	GTCTC	3 cut(s)	429, 666, 724
BsmBI	CGTCTC	1 cut(s)	429
BsmFI	GGGAC	2 cut(s)	469, 1056
BsmI	GAATGC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	1034
Bsp143I	GATC	4 cut(s)	508, 764, 895, 928
BspACI	CCGC	6 cut(s)	44, 107, 150, 328, 824, 903
BspCNI	CTCAG	2 cut(s)	772, 964
BspFNI	CGCG	2 cut(s)	80, 903
BspLI	GGNNCC	6 cut(s)	214, 392, 766, 882, 914, 930
BspPI	GGATC	5 cut(s)	759, 772, 890, 923, 936
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	2 cut(s)	212, 880
BsrBI	CCGCTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	916, 1121
BsrGI	TGTACA	1 cut(s)	1034
BsrI	ACTGG	5 cut(s)	233, 627, 862, 914, 930
BssECI	CCNNGG	2 cut(s)	83, 1073
BssHII	GCGCGC	1 cut(s)	78
BssMI	GATC	4 cut(s)	508, 764, 895, 928
BssNI	GRCGYC	2 cut(s)	20, 213
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	1075
Bst4CI	ACNGT	5 cut(s)	113, 136, 240, 395, 801
Bst6I	CTCTTC	2 cut(s)	26, 295
BstACI	GRCGYC	2 cut(s)	20, 213
BstAPI	GCANNNNNTGC	1 cut(s)	985
BstAUI	TGTACA	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	80, 186, 940
BstDEI	CTNAG	4 cut(s)	350, 606, 780, 951
BstF5I	GGATG	2 cut(s)	178, 1037
BstFNI	CGCG	2 cut(s)	80, 903
BstH2I	RGCGCY	3 cut(s)	68, 162, 216
BstHHI	GCGC	5 cut(s)	67, 80, 82, 161, 215
BstKTI	GATC	4 cut(s)	511, 767, 898, 931
BstMAI	GTCTC	3 cut(s)	429, 666, 724
BstMBI	GATC	4 cut(s)	508, 764, 895, 928
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 158, 165, 428, 437, 542, 985
BstNI	CCWGG	1 cut(s)	1075
BstNSI	RCATGY	2 cut(s)	942, 988
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	1073
BstSFI	CTRYAG	2 cut(s)	725, 1133
BstUI	CGCG	2 cut(s)	80, 903
BstV1I	GCAGC	4 cut(s)	54, 115, 590, 947
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	2 cut(s)	764, 928
BstYI	RGATCY	2 cut(s)	764, 928
BtrI	CACGTC	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	178, 1037
BtsI	GCAGTG	2 cut(s)	447, 1056
BtsIMutI	CAGTG	4 cut(s)	447, 634, 907, 1056
Cac8I	GCNNGC	3 cut(s)	80, 186, 940
CaiI	CAGNNNCTG	1 cut(s)	1132
CfoI	GCGC	5 cut(s)	67, 80, 82, 161, 215
CseI	GACGC	2 cut(s)	28, 446
Csp6I	GTAC	4 cut(s)	614, 962, 1015, 1035
CviAII	CATG	6 cut(s)	127, 872, 939, 985, 1046, 1082
CviJI	RGCY	8 cut(s)	106, 232, 422, 497, 545, 848, 893, 1132
CviKI_1	RGCY	8 cut(s)	106, 232, 422, 497, 545, 848, 893, 1132
CviQI	GTAC	4 cut(s)	614, 962, 1015, 1035
DdeI	CTNAG	4 cut(s)	350, 606, 780, 951
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	4 cut(s)	510, 766, 897, 930
DpnII	GATC	4 cut(s)	508, 764, 895, 928
Eam1104I	CTCTTC	2 cut(s)	26, 295
EarI	CTCTTC	2 cut(s)	26, 295
Eco130I	CCWWGG	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	873
EcoRII	CCWGG	1 cut(s)	1073
EcoT14I	CCWWGG	1 cut(s)	83
EcoT22I	ATGCAT	1 cut(s)	808
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	6 cut(s)	130, 875, 942, 988, 1049, 1085
FaqI	GGGAC	2 cut(s)	469, 1056
FatI	CATG	6 cut(s)	126, 871, 938, 984, 1045, 1081
FauI	CCCGC	2 cut(s)	157, 321
Fnu4HI	GCNGC	5 cut(s)	68, 104, 107, 579, 936
FokI	GGATG	2 cut(s)	185, 1044
Fsp4HI	GCNGC	5 cut(s)	68, 104, 107, 579, 936
GlaI	GCGC	5 cut(s)	66, 79, 81, 160, 214
GluI	GCNGC	5 cut(s)	68, 104, 107, 579, 936
GsaI	CCCAGC	1 cut(s)	570
HaeII	RGCGCY	3 cut(s)	68, 162, 216
HapII	CCGG	4 cut(s)	216, 432, 762, 932
HgaI	GACGC	2 cut(s)	28, 446
HhaI	GCGC	5 cut(s)	67, 80, 82, 161, 215
Hin1I	GRCGYC	2 cut(s)	20, 213
Hin1II	CATG	6 cut(s)	130, 875, 942, 988, 1049, 1085
Hin6I	GCGC	5 cut(s)	65, 78, 80, 159, 213
HinP1I	GCGC	5 cut(s)	65, 78, 80, 159, 213
HpaII	CCGG	4 cut(s)	216, 432, 762, 932
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	124, 859
Hpy188I	TCNGA	2 cut(s)	140, 476
Hpy188III	TCNNGA	6 cut(s)	374, 506, 662, 746, 779, 838
Hpy8I	GTNNAC	2 cut(s)	124, 859
HpyAV	CCTTC	1 cut(s)	897
HpyCH4III	ACNGT	5 cut(s)	113, 136, 240, 395, 801
HpyCH4IV	ACGT	5 cut(s)	59, 74, 313, 461, 538
HpyCH4V	TGCA	7 cut(s)	90, 759, 806, 921, 942, 967, 1126
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 158, 165, 428, 437, 542, 985
HpyF3I	CTNAG	4 cut(s)	350, 606, 780, 951
HpySE526I	ACGT	5 cut(s)	59, 74, 313, 461, 538
Hsp92I	GRCGYC	2 cut(s)	20, 213
Hsp92II	CATG	6 cut(s)	130, 875, 942, 988, 1049, 1085
HspAI	GCGC	5 cut(s)	65, 78, 80, 159, 213
KasI	GGCGCC	1 cut(s)	212
Kzo9I	GATC	4 cut(s)	508, 764, 895, 928
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	218, 419
Lsp1109I	GCAGC	4 cut(s)	54, 115, 590, 947
LweI	GCATC	1 cut(s)	637
MaeII	ACGT	5 cut(s)	59, 74, 313, 461, 538
MaeIII	GTNAC	3 cut(s)	4, 55, 593
MalI	GATC	4 cut(s)	510, 766, 897, 930
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	4 cut(s)	508, 764, 895, 928
MboII	GAAGA	4 cut(s)	28, 43, 312, 503
MfeI	CAATTG	1 cut(s)	385
MflI	RGATCY	2 cut(s)	764, 928
MluCI	AATT	1 cut(s)	385
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	281, 1078
Mph1103I	ATGCAT	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	304
MseI	TTAA	2 cut(s)	369, 956
MspA1I	CMGCKG	1 cut(s)	893
MspI	CCGG	4 cut(s)	216, 432, 762, 932
MspR9I	CCNGG	1 cut(s)	1075
MunI	CAATTG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	1075
MvnI	CGCG	2 cut(s)	80, 903
MwoI	GCNNNNNNNGC	7 cut(s)	50, 158, 165, 428, 437, 542, 985
NarI	GGCGCC	1 cut(s)	213
NdeII	GATC	4 cut(s)	508, 764, 895, 928
NlaIII	CATG	6 cut(s)	130, 875, 942, 988, 1049, 1085
NlaIV	GGNNCC	6 cut(s)	214, 392, 766, 882, 914, 930
NmeAIII	GCCGAG	3 cut(s)	135, 824, 998
NmuCI	GTSAC	2 cut(s)	55, 593
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	2 cut(s)	942, 988
PaeI	GCATGC	1 cut(s)	942
PauI	GCGCGC	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	304
PfeI	GAWTC	8 cut(s)	207, 346, 403, 654, 685, 742, 813, 1096
PflFI	GACNNNGTC	1 cut(s)	716
PkrI	GCNGC	5 cut(s)	69, 105, 108, 580, 937
PleI	GAGTC	2 cut(s)	280, 1077
PluTI	GGCGCC	1 cut(s)	216
PpsI	GAGTC	2 cut(s)	280, 1077
Ppu21I	YACGTR	1 cut(s)	539
PshAI	GACNNNNGTC	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	1073
PspFI	CCCAGC	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	1073
PspN4I	GGNNCC	6 cut(s)	214, 392, 766, 882, 914, 930
PstNI	CAGNNNCTG	1 cut(s)	1132
PsuI	RGATCY	2 cut(s)	764, 928
PsyI	GACNNNGTC	1 cut(s)	716
PteI	GCGCGC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	4 cut(s)	615, 963, 1016, 1036
RsaNI	GTAC	4 cut(s)	614, 962, 1015, 1035
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	369, 956
SatI	GCNGC	5 cut(s)	68, 104, 107, 579, 936
Sau3AI	GATC	4 cut(s)	508, 764, 895, 928
ScaI	AGTACT	1 cut(s)	1016
SchI	GAGTC	2 cut(s)	281, 1078
ScrFI	CCNGG	1 cut(s)	1075
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	2 cut(s)	725, 1133
SfoI	GGCGCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SphI	GCATGC	1 cut(s)	942
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	6 cut(s)	44, 107, 150, 328, 824, 903
SspDI	GGCGCC	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	1073
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	5 cut(s)	113, 136, 240, 395, 801
TaiI	ACGT	5 cut(s)	62, 77, 316, 464, 541
TaqI	TCGA	1 cut(s)	406
TasI	AATT	1 cut(s)	385
TatI	WGTACW	3 cut(s)	961, 1014, 1034
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	8 cut(s)	207, 346, 403, 654, 685, 742, 813, 1096
Tru1I	TTAA	2 cut(s)	369, 956
Tru9I	TTAA	2 cut(s)	369, 956
TscAI	CASTG	4 cut(s)	447, 634, 914, 1063
TseFI	GTSAC	2 cut(s)	55, 593
TseI	GCWGC	4 cut(s)	67, 103, 578, 935
Tsp45I	GTSAC	2 cut(s)	55, 593
TspDTI	ATGAA	6 cut(s)	29, 335, 414, 681, 805, 823
TspRI	CASTG	4 cut(s)	447, 634, 914, 1063
Tth111I	GACNNNGTC	1 cut(s)	716
XceI	RCATGY	2 cut(s)	942, 988
XcmI	CCANNNNNNNNNTGG	2 cut(s)	869, 906
XmnI	GAANNNNTTC	1 cut(s)	304
ZrmI	AGTACT	1 cut(s)	1016
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.