Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002832.1

Orthogroup ID

OG0007825

Physical Location & Seq

Genomic Coordinates Reverse (-)

80486 .. 85625

Gene Structure 5140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002832.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgaagacgacgatgacgaagagcgtgaatgcggtggtagcagtcacgttggcgctgctaacgtgcgcgccttggtgcatttactcacagcagccgcaccagcttatggtgaacatgaccaccgtccgaaatgcccccgctctcggcgctttttgcttggatgggagtttgcctgcgtatcatattcacagaggcttcggcgccggagcaagaaactggcttttacagtttgagggtggagggtggtgtaatgatatagagtcttgcttggagagggcgaaaacaagaagaggttctacacgccttatgagcaagtgggaggtcttttctgggattctaagtaataatgcttctcttaatccagatttttacaattggaaccgtgtgaagattcgatattgtgatggagcttcatttgccggagacgcagtgtataagaatgggacaacgttgctctatttcagagggcaaaagatttgggaagccatcattcttgatcttctgcctaaaggtttaggaaaggcacgtaaggctttgttatcaggttgctctgctgggggtttagcagcatttttacattgtgacgacttcactaagtatgtaccaagtaatgccagtgtaaaatgcttgagtgatgctggattctttcttgatgaaagagacataggtttgaatcacacaatgaggtctttctataaagaccttgtctctctacagggtgtagaaaagaatctggataagaactgcaccggatcccttccttttcctgagttgtgtattttcccacagtatgcattgagattcatcacaccgccttttttcatcttgaactcggcttatgatgtttaccagttccatcatggattggtgccatcttcagctgatccacgcggacactggaaccgttgcaaactggatccggcagcatgcaatcctgctcagttagatgtattgcaaggtttcaggcgcgacatgcttgttgctttggcattgttctacaagtactcggcaagaggggggatgtacatcaactcatgctttgctcactgccaaagtgagtcccaggacacatggtttggggttgattctccaagaatacacaacaagaccattgcagaagctgtaggtgactggtattttagcagaaggataactaataaggaagttgactgtgcatacccttgtgacactacctgccataaccttataccagcaaacacaagctcaggtcttgtagaagatctcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

416

Amino Acids

46.33

Weight (kDa)

8.35

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23870 AT5G23870 AT5G23870 AT5G23870
fragaria_vesca	FvH4_7g29640 FvH4_7g29640 FvH4_7g29640
malus_domestica	MD01G1203300.v1.1 MD07G1272700.v1.1
prunus_persica	Prupe.1G518100_v2.0.a1 Prupe.2G296000_v2.0.a1 Prupe.2G296000_v2.0.a1
pyrus_communis	pycom07g24910
rosa_chinensis	RchiOBHm_Chr1g0377651
rosa_laevigata	RLG00000026508
rosa_multiflora	Rmu_co8476537.1_g000001 Rmu_sc0002832.1_g000014
rosa_roxburghii	Rroxscaffold_4G00281140
rosa_rugosa	Rorug01G0403900
rosa_samantha	Rh1AG428600 Rh1BG380800 Rh1CG394800 Rh1DG411800
rosa_wichuraiana	Rw1G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1202
AccB1I	GGYRCC	2 cut(s)	200, 868
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	140
AccII	CGCG	3 cut(s)	68, 891, 969
AciI	CCGC	5 cut(s)	32, 95, 138, 812, 891
AclI	AACGTT	1 cut(s)	449
AclWI	GGATC	5 cut(s)	747, 760, 878, 911, 924
AcuI	CTGAAG	1 cut(s)	861
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	3 cut(s)	603, 1004, 1025
AfiI	CCNNNNNNNGG	2 cut(s)	106, 143
AgsI	TTSAA	2 cut(s)	673, 829
AjnI	CCWGG	1 cut(s)	1062
AluBI	AGCT	5 cut(s)	103, 410, 881, 1121, 1224
AluI	AGCT	5 cut(s)	103, 410, 881, 1121, 1224
Alw26I	GTCTC	3 cut(s)	417, 654, 712
AlwI	GGATC	5 cut(s)	747, 760, 878, 911, 924
AlwNI	CAGNNNCTG	1 cut(s)	1121
ApeKI	GCWGC	4 cut(s)	55, 91, 566, 923
ArsI	GACNNNNNNTTYG	2 cut(s)	1058, 1090
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	6 cut(s)	55, 68, 70, 149, 203, 969
AsuHPI	GGTGA	2 cut(s)	121, 1139
BamHI	GGATCC	2 cut(s)	752, 916
BanI	GGYRCC	2 cut(s)	200, 868
BarI	GAAGNNNNNNTAC	4 cut(s)	280, 312, 334, 366
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	42, 103, 578, 935
BccI	CCATC	5 cut(s)	155, 398, 494, 864, 880
BciT130I	CCWGG	1 cut(s)	1064
BcoDI	GTCTC	3 cut(s)	417, 654, 712
BfmI	CTRYAG	2 cut(s)	713, 1122
BfoI	RGCGCY	3 cut(s)	56, 150, 204
BfuAI	ACCTGC	1 cut(s)	1202
BglII	AGATCT	1 cut(s)	1240
BisI	GCNGC	5 cut(s)	56, 92, 95, 567, 924
BlsI	GCNGC	5 cut(s)	57, 93, 96, 568, 925
BmcAI	AGTACT	1 cut(s)	1004
Bme1390I	CCNGG	1 cut(s)	1064
BmiI	GGNNCC	6 cut(s)	202, 380, 754, 870, 902, 918
BmrFI	CCNGG	1 cut(s)	1064
BmsI	GCATC	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	1225
BpuEI	CTTGAG	1 cut(s)	649
BsaAI	YACGTR	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	1025
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	71, 1062
BsaWI	WCCGGW	1 cut(s)	749
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 143
Bse1I	ACTGG	6 cut(s)	221, 615, 850, 902, 918, 1136
Bse3DI	GCAATG	1 cut(s)	1110
Bse8I	GATNNNNATC	1 cut(s)	1025
BseBI	CCWGG	1 cut(s)	1064
BseDI	CCNNGG	2 cut(s)	71, 1062
BseGI	GGATG	2 cut(s)	166, 1026
BseJI	GATNNNNATC	1 cut(s)	1025
BseLI	CCNNNNNNNGG	2 cut(s)	106, 143
BseMI	GCAATG	1 cut(s)	1110
BseMII	CTCAG	3 cut(s)	759, 953, 1239
BseNI	ACTGG	6 cut(s)	221, 615, 850, 902, 918, 1136
BsePI	GCGCGC	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	42, 103, 578, 935
BseYI	CCCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	730
Bsh1236I	CGCG	3 cut(s)	68, 891, 969
BshNI	GGYRCC	2 cut(s)	200, 868
BsiSI	CCGG	4 cut(s)	204, 420, 750, 920
BslFI	GGGAC	2 cut(s)	457, 1045
BslI	CCNNNNNNNGG	2 cut(s)	106, 143
BsmAI	GTCTC	3 cut(s)	417, 654, 712
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	457, 1045
BsmI	GAATGC	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp143I	GATC	5 cut(s)	496, 752, 883, 916, 1240
BspACI	CCGC	5 cut(s)	32, 95, 138, 812, 891
BspCNI	CTCAG	3 cut(s)	760, 952, 1238
BspFNI	CGCG	3 cut(s)	68, 891, 969
BspLI	GGNNCC	6 cut(s)	202, 380, 754, 870, 902, 918
BspMI	ACCTGC	1 cut(s)	1202
BspPI	GGATC	5 cut(s)	747, 760, 878, 911, 924
BspQI	GCTCTTC	1 cut(s)	14
BspT107I	GGYRCC	2 cut(s)	200, 868
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	1110
BsrGI	TGTACA	1 cut(s)	1023
BsrI	ACTGG	6 cut(s)	221, 615, 850, 902, 918, 1136
BssECI	CCNNGG	2 cut(s)	71, 1062
BssHII	GCGCGC	1 cut(s)	66
BssMI	GATC	5 cut(s)	496, 752, 883, 916, 1240
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	1064
Bst4CI	ACNGT	6 cut(s)	124, 228, 383, 789, 905, 1172
Bst6I	CTCTTC	2 cut(s)	14, 283
BstACI	GRCGYC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	1023
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	68, 174, 928
BstDEI	CTNAG	5 cut(s)	338, 594, 768, 939, 1225
BstF5I	GGATG	2 cut(s)	166, 1026
BstFNI	CGCG	3 cut(s)	68, 891, 969
BstH2I	RGCGCY	3 cut(s)	56, 150, 204
BstHHI	GCGC	6 cut(s)	55, 68, 70, 149, 203, 969
BstKTI	GATC	5 cut(s)	499, 755, 886, 919, 1243
BstMAI	GTCTC	3 cut(s)	417, 654, 712
BstMBI	GATC	5 cut(s)	496, 752, 883, 916, 1240
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 100, 146, 153, 309, 416, 425, 530, 973
BstNI	CCWGG	1 cut(s)	1064
BstNSI	RCATGY	2 cut(s)	930, 976
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	1062
BstSFI	CTRYAG	2 cut(s)	713, 1122
BstUI	CGCG	3 cut(s)	68, 891, 969
BstV1I	GCAGC	4 cut(s)	42, 103, 578, 935
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	3 cut(s)	752, 916, 1240
BstYI	RGATCY	3 cut(s)	752, 916, 1240
BtsCI	GGATG	2 cut(s)	166, 1026
BtsI	GCAGTG	2 cut(s)	435, 1045
BtsIMutI	CAGTG	4 cut(s)	435, 622, 895, 1045
BveI	ACCTGC	1 cut(s)	1202
Cac8I	GCNNGC	3 cut(s)	68, 174, 928
CaiI	CAGNNNCTG	1 cut(s)	1121
CfoI	GCGC	6 cut(s)	55, 68, 70, 149, 203, 969
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	602, 1003, 1024
CviAII	CATG	6 cut(s)	115, 860, 927, 973, 1035, 1071
CviQI	GTAC	3 cut(s)	602, 1003, 1024
DdeI	CTNAG	5 cut(s)	338, 594, 768, 939, 1225
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	5 cut(s)	498, 754, 885, 918, 1242
DpnII	GATC	5 cut(s)	496, 752, 883, 916, 1240
Eam1104I	CTCTTC	2 cut(s)	14, 283
EarI	CTCTTC	2 cut(s)	14, 283
Eco130I	CCWWGG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	1062
EcoT14I	CCWWGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	796
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	6 cut(s)	118, 863, 930, 976, 1038, 1074
FaqI	GGGAC	2 cut(s)	457, 1045
FatI	CATG	6 cut(s)	114, 859, 926, 972, 1034, 1070
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	5 cut(s)	56, 92, 95, 567, 924
FokI	GGATG	2 cut(s)	173, 1033
Fsp4HI	GCNGC	5 cut(s)	56, 92, 95, 567, 924
GlaI	GCGC	6 cut(s)	54, 67, 69, 148, 202, 968
GluI	GCNGC	5 cut(s)	56, 92, 95, 567, 924
GsaI	CCCAGC	1 cut(s)	558
HaeII	RGCGCY	3 cut(s)	56, 150, 204
HapII	CCGG	4 cut(s)	204, 420, 750, 920
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	6 cut(s)	55, 68, 70, 149, 203, 969
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	118, 863, 930, 976, 1038, 1074
Hin6I	GCGC	6 cut(s)	53, 66, 68, 147, 201, 967
HinP1I	GCGC	6 cut(s)	53, 66, 68, 147, 201, 967
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HinfI	GANTC	9 cut(s)	260, 334, 391, 642, 673, 730, 801, 1058, 1085
HpaII	CCGG	4 cut(s)	204, 420, 750, 920
HphI	GGTGA	2 cut(s)	121, 1139
Hpy166II	GTNNAC	3 cut(s)	112, 847, 1168
Hpy188I	TCNGA	2 cut(s)	128, 464
Hpy188III	TCNNGA	6 cut(s)	362, 494, 650, 734, 767, 826
Hpy8I	GTNNAC	3 cut(s)	112, 847, 1168
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	767, 1140
HpyCH4III	ACNGT	6 cut(s)	124, 228, 383, 789, 905, 1172
HpyCH4IV	ACGT	4 cut(s)	47, 62, 449, 526
HpyCH4V	TGCA	8 cut(s)	78, 747, 794, 909, 930, 955, 1115, 1175
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 100, 146, 153, 309, 416, 425, 530, 973
HpyF3I	CTNAG	5 cut(s)	338, 594, 768, 939, 1225
HpySE526I	ACGT	4 cut(s)	47, 62, 449, 526
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	118, 863, 930, 976, 1038, 1074
HspAI	GCGC	6 cut(s)	53, 66, 68, 147, 201, 967
KasI	GGCGCC	1 cut(s)	200
Kzo9I	GATC	5 cut(s)	496, 752, 883, 916, 1240
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	206, 407
Lsp1109I	GCAGC	4 cut(s)	42, 103, 578, 935
LweI	GCATC	1 cut(s)	625
MaeII	ACGT	4 cut(s)	47, 62, 449, 526
MaeIII	GTNAC	4 cut(s)	43, 581, 1127, 1184
MalI	GATC	5 cut(s)	498, 754, 885, 918, 1242
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	5 cut(s)	496, 752, 883, 916, 1240
MboII	GAAGA	7 cut(s)	16, 31, 300, 400, 491, 867, 1250
MfeI	CAATTG	1 cut(s)	373
MflI	RGATCY	3 cut(s)	752, 916, 1240
MluCI	AATT	2 cut(s)	373, 1246
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	269, 1067
MnlI	CCTC	9 cut(s)	185, 226, 233, 267, 284, 313, 458, 678, 1007
Mph1103I	ATGCAT	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	2 cut(s)	357, 1249
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	4 cut(s)	204, 420, 750, 920
MspR9I	CCNGG	1 cut(s)	1064
MunI	CAATTG	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	1064
MvnI	CGCG	3 cut(s)	68, 891, 969
MwoI	GCNNNNNNNGC	9 cut(s)	38, 100, 146, 153, 309, 416, 425, 530, 973
NarI	GGCGCC	1 cut(s)	201
NdeII	GATC	5 cut(s)	496, 752, 883, 916, 1240
NlaIII	CATG	6 cut(s)	118, 863, 930, 976, 1038, 1074
NlaIV	GGNNCC	6 cut(s)	202, 380, 754, 870, 902, 918
NmeAIII	GCCGAG	3 cut(s)	123, 812, 986
NmuCI	GTSAC	4 cut(s)	43, 581, 1127, 1184
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	2 cut(s)	930, 976
PaeI	GCATGC	1 cut(s)	930
PauI	GCGCGC	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	7 cut(s)	334, 391, 642, 673, 730, 801, 1085
PflFI	GACNNNGTC	1 cut(s)	704
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	57, 93, 96, 568, 925
PleI	GAGTC	2 cut(s)	268, 1066
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	2 cut(s)	268, 1066
Ppu21I	YACGTR	1 cut(s)	527
PshAI	GACNNNNGTC	1 cut(s)	122
Psp1406I	AACGTT	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	1062
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	1062
PspN4I	GGNNCC	6 cut(s)	202, 380, 754, 870, 902, 918
PstNI	CAGNNNCTG	1 cut(s)	1121
PsuI	RGATCY	3 cut(s)	752, 916, 1240
PsyI	GACNNNGTC	1 cut(s)	704
PteI	GCGCGC	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	3 cut(s)	603, 1004, 1025
RsaNI	GTAC	3 cut(s)	602, 1003, 1024
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	357, 1249
SatI	GCNGC	5 cut(s)	56, 92, 95, 567, 924
Sau3AI	GATC	5 cut(s)	496, 752, 883, 916, 1240
ScaI	AGTACT	1 cut(s)	1004
SchI	GAGTC	2 cut(s)	269, 1067
ScrFI	CCNGG	1 cut(s)	1064
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	2 cut(s)	713, 1122
SfoI	GGCGCC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
SphI	GCATGC	1 cut(s)	930
Sse9I	AATT	2 cut(s)	373, 1246
SsiI	CCGC	5 cut(s)	32, 95, 138, 812, 891
SspDI	GGCGCC	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	1062
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	6 cut(s)	124, 228, 383, 789, 905, 1172
TaiI	ACGT	4 cut(s)	50, 65, 452, 529
TaqI	TCGA	1 cut(s)	394
TasI	AATT	2 cut(s)	373, 1246
TatI	WGTACW	2 cut(s)	1002, 1023
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	7 cut(s)	334, 391, 642, 673, 730, 801, 1085
Tru1I	TTAA	2 cut(s)	357, 1249
Tru9I	TTAA	2 cut(s)	357, 1249
TscAI	CASTG	4 cut(s)	435, 622, 902, 1052
TseFI	GTSAC	4 cut(s)	43, 581, 1127, 1184
TseI	GCWGC	4 cut(s)	55, 91, 566, 923
Tsp45I	GTSAC	4 cut(s)	43, 581, 1127, 1184
TspDTI	ATGAA	5 cut(s)	17, 402, 669, 793, 811
TspRI	CASTG	4 cut(s)	435, 622, 902, 1052
Tth111I	GACNNNGTC	1 cut(s)	704
Van91I	CCANNNNNTGG	1 cut(s)	106
XceI	RCATGY	2 cut(s)	930, 976
XcmI	CCANNNNNNNNNTGG	2 cut(s)	857, 894
XmnI	GAANNNNTTC	1 cut(s)	292
ZrmI	AGTACT	1 cut(s)	1004
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.