Rmu_co8476537.1_g000001

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8476537.1
Physical Location & Seq
Forward (+)
1 .. 1913
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8476537.1_g000001.1.cds

Sequence Viewer

Length: 770 bp
atttttacaattggaaccgtgtgaagattcgatattgtgatggagcttcatttgccggagacgcagtgtataagaatgggacaacgttgctctatttcagagggcaaaagatttgggaagccatcattcttgatcttctgcctaaaggtttaggaaaggcacgtaaggctttgttatcaggttgctctgctgggggtttagcagcatttttacattgtgacgacttcactaagtatgtaccaagtaatgccagtgtaaaatgcttgagtgatgctggattctttcttgatgaaagagacataggtttgaatcacacaatgaggtctttctataaagaccttgtctctctacagggtgtagaaaagaatctggataagaactgcaccggatcccttccttttcctgagttgtgtattttcccacagtatgcattgagattcatcacaccgccttttttcatcttgaactcggcttatgatgtttaccagttccatcatggattggtgccatcttcagctgatccacgcggacactggaaccgttgcaaactggatccggcagcatgcaatcctgctcagttagatgtattgcaaggtttcaggcgcgacatgcttgttgctttggcattgttctacaagtactcggcaagaggggggatgtacatcaactcatgctttgctcactgccaaagtgagtcccaggacacatggtttggggttgattctccaagaatacacaacaaggtaagtgaaattgactgttacacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

255

Amino Acids

28.69

Weight (kDa)

8.26

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 504
AccII CGCG 2 cut(s) 527, 605
AciI CCGC 2 cut(s) 448, 527
AclI AACGTT 1 cut(s) 85
AclWI GGATC 5 cut(s) 383, 396, 514, 547, 560
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 3 cut(s) 239, 640, 661
AgsI TTSAA 2 cut(s) 309, 465
AjnI CCWGG 1 cut(s) 698
AluBI AGCT 2 cut(s) 46, 517
AluI AGCT 2 cut(s) 46, 517
Alw26I GTCTC 3 cut(s) 53, 290, 348
AlwI GGATC 5 cut(s) 383, 396, 514, 547, 560
ApeKI GCWGC 2 cut(s) 202, 559
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
AspLEI GCGC 1 cut(s) 605
BamHI GGATCC 2 cut(s) 388, 552
BanI GGYRCC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 214, 571
BccI CCATC 4 cut(s) 34, 130, 500, 516
BciT130I CCWGG 1 cut(s) 700
BcoDI GTCTC 3 cut(s) 53, 290, 348
BfmI CTRYAG 1 cut(s) 349
BisI GCNGC 2 cut(s) 203, 560
BlsI GCNGC 2 cut(s) 204, 561
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 1 cut(s) 700
BmiI GGNNCC 5 cut(s) 16, 390, 506, 538, 554
BmrFI CCNGG 1 cut(s) 700
BmsI GCATC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 661
BsaJI CCNNGG 1 cut(s) 698
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bse1I ACTGG 4 cut(s) 251, 486, 538, 554
Bse8I GATNNNNATC 1 cut(s) 661
BseBI CCWGG 1 cut(s) 700
BseDI CCNNGG 1 cut(s) 698
BseGI GGATG 1 cut(s) 662
BseJI GATNNNNATC 1 cut(s) 661
BseMII CTCAG 2 cut(s) 395, 589
BseNI ACTGG 4 cut(s) 251, 486, 538, 554
BseXI GCAGC 2 cut(s) 214, 571
BseYI CCCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 366
Bsh1236I CGCG 2 cut(s) 527, 605
BshNI GGYRCC 1 cut(s) 504
BsiSI CCGG 3 cut(s) 56, 386, 556
BslFI GGGAC 2 cut(s) 93, 681
BsmAI GTCTC 3 cut(s) 53, 290, 348
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 93, 681
Bsp1407I TGTACA 1 cut(s) 659
Bsp143I GATC 4 cut(s) 132, 388, 519, 552
BspACI CCGC 2 cut(s) 448, 527
BspCNI CTCAG 2 cut(s) 396, 588
BspFNI CGCG 2 cut(s) 527, 605
BspLI GGNNCC 5 cut(s) 16, 390, 506, 538, 554
BspPI GGATC 5 cut(s) 383, 396, 514, 547, 560
BspT107I GGYRCC 1 cut(s) 504
BsrGI TGTACA 1 cut(s) 659
BsrI ACTGG 4 cut(s) 251, 486, 538, 554
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 4 cut(s) 132, 388, 519, 552
Bst2UI CCWGG 1 cut(s) 700
Bst4CI ACNGT 4 cut(s) 19, 425, 541, 760
BstAUI TGTACA 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 3 cut(s) 230, 404, 575
BstF5I GGATG 1 cut(s) 662
BstFNI CGCG 2 cut(s) 527, 605
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 4 cut(s) 135, 391, 522, 555
BstMAI GTCTC 3 cut(s) 53, 290, 348
BstMBI GATC 4 cut(s) 132, 388, 519, 552
BstMWI GCNNNNNNNGC 4 cut(s) 52, 61, 166, 609
BstNI CCWGG 1 cut(s) 700
BstNSI RCATGY 2 cut(s) 566, 612
BstSCI CCNGG 1 cut(s) 698
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 2 cut(s) 527, 605
BstV1I GCAGC 2 cut(s) 214, 571
BstX2I RGATCY 2 cut(s) 388, 552
BstYI RGATCY 2 cut(s) 388, 552
BtsCI GGATG 1 cut(s) 662
BtsI GCAGTG 2 cut(s) 71, 681
BtsIMutI CAGTG 4 cut(s) 71, 258, 531, 681
Cac8I GCNNGC 1 cut(s) 564
CfoI GCGC 1 cut(s) 605
CseI GACGC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 238, 639, 660
CviAII CATG 5 cut(s) 496, 563, 609, 671, 707
CviJI RGCY 5 cut(s) 46, 121, 169, 472, 517
CviKI_1 RGCY 5 cut(s) 46, 121, 169, 472, 517
CviQI GTAC 3 cut(s) 238, 639, 660
DdeI CTNAG 3 cut(s) 230, 404, 575
DpnI GATC 4 cut(s) 134, 390, 521, 554
DpnII GATC 4 cut(s) 132, 388, 519, 552
Eco57I CTGAAG 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 698
EcoT22I ATGCAT 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 5 cut(s) 499, 566, 612, 674, 710
FaqI GGGAC 2 cut(s) 93, 681
FatI CATG 5 cut(s) 495, 562, 608, 670, 706
Fnu4HI GCNGC 2 cut(s) 203, 560
FokI GGATG 1 cut(s) 669
Fsp4HI GCNGC 2 cut(s) 203, 560
GlaI GCGC 1 cut(s) 604
GluI GCNGC 2 cut(s) 203, 560
GsaI CCCAGC 1 cut(s) 194
HapII CCGG 3 cut(s) 56, 386, 556
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 605
Hin1II CATG 5 cut(s) 499, 566, 612, 674, 710
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HinfI GANTC 7 cut(s) 27, 278, 309, 366, 437, 694, 721
HpaII CCGG 3 cut(s) 56, 386, 556
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 5 cut(s) 130, 286, 370, 403, 462
Hpy8I GTNNAC 1 cut(s) 483
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 4 cut(s) 19, 425, 541, 760
HpyCH4IV ACGT 2 cut(s) 85, 162
HpyCH4V TGCA 5 cut(s) 383, 430, 545, 566, 591
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 61, 166, 609
HpyF3I CTNAG 3 cut(s) 230, 404, 575
HpySE526I ACGT 2 cut(s) 85, 162
Hsp92II CATG 5 cut(s) 499, 566, 612, 674, 710
HspAI GCGC 1 cut(s) 603
Kzo9I GATC 4 cut(s) 132, 388, 519, 552
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 2 cut(s) 214, 571
LweI GCATC 1 cut(s) 261
MaeII ACGT 2 cut(s) 85, 162
MaeIII GTNAC 2 cut(s) 217, 760
MalI GATC 4 cut(s) 134, 390, 521, 554
MboI GATC 4 cut(s) 132, 388, 519, 552
MboII GAAGA 3 cut(s) 36, 127, 503
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 2 cut(s) 388, 552
MluCI AATT 2 cut(s) 9, 752
MlyI GAGTC 1 cut(s) 703
MnlI CCTC 3 cut(s) 94, 314, 643
Mph1103I ATGCAT 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 517
MspI CCGG 3 cut(s) 56, 386, 556
MspR9I CCNGG 1 cut(s) 700
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 700
MvnI CGCG 2 cut(s) 527, 605
MwoI GCNNNNNNNGC 4 cut(s) 52, 61, 166, 609
NdeII GATC 4 cut(s) 132, 388, 519, 552
NlaIII CATG 5 cut(s) 499, 566, 612, 674, 710
NlaIV GGNNCC 5 cut(s) 16, 390, 506, 538, 554
NmeAIII GCCGAG 2 cut(s) 448, 622
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 2 cut(s) 566, 612
PaeI GCATGC 1 cut(s) 566
PfeI GAWTC 6 cut(s) 27, 278, 309, 366, 437, 721
PflFI GACNNNGTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 204, 561
PleI GAGTC 1 cut(s) 702
PpsI GAGTC 1 cut(s) 702
Ppu21I YACGTR 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 698
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 698
PspN4I GGNNCC 5 cut(s) 16, 390, 506, 538, 554
PsuI RGATCY 2 cut(s) 388, 552
PsyI GACNNNGTC 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 3 cut(s) 239, 640, 661
RsaNI GTAC 3 cut(s) 238, 639, 660
SatI GCNGC 2 cut(s) 203, 560
Sau3AI GATC 4 cut(s) 132, 388, 519, 552
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 1 cut(s) 700
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
SphI GCATGC 1 cut(s) 566
Sse9I AATT 2 cut(s) 9, 752
SsiI CCGC 2 cut(s) 448, 527
StyD4I CCNGG 1 cut(s) 698
TaaI ACNGT 4 cut(s) 19, 425, 541, 760
TaiI ACGT 2 cut(s) 88, 165
TaqI TCGA 1 cut(s) 30
TasI AATT 2 cut(s) 9, 752
TatI WGTACW 2 cut(s) 638, 659
TfiI GAWTC 6 cut(s) 27, 278, 309, 366, 437, 721
TscAI CASTG 4 cut(s) 71, 258, 538, 688
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 2 cut(s) 202, 559
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 38, 305, 429, 447
TspRI CASTG 4 cut(s) 71, 258, 538, 688
Tth111I GACNNNGTC 1 cut(s) 340
XceI RCATGY 2 cut(s) 566, 612
XcmI CCANNNNNNNNNTGG 2 cut(s) 493, 530
ZrmI AGTACT 1 cut(s) 640
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.