Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005618

Physical Location & Seq

Genomic Coordinates Forward (+)

21832928 .. 21836293

Gene Structure 3366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29770.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCGATCCTATGTGGCTGCCCTCTCATAGAATGTGTTTACTGTCTGGCCTGTACTCGGTGGGCTTATAAGCGATGCCTCCACACAGCAGGCCATGACAGTGAGACTTGGGGCCTTTCCAGTGCTGAAGAATTTGAGCCTGTTCCTCGCATCTGCCGCTACATTCTGGCAGTTTACGAAGATGATCTTAGGCAACCACTTTGGGAACCACCTGGTGGATATGGAATTAACCCGGATTGGTTAATTTCTAAAAAAACATATGTAGATACCCGAGGCCAAGCTCCTCCTTATATATTGTATCTTGATCATAATCATGCCGATATAGTTCTTGCGTTTAGAGGCCTTAATTTGGCAAGAGAGAGTGACTATGCAGTTTTATTGGACAATAAGCTGGGGAAGAGGAAATTTGATGGTGGATATGTTCACAATGGGCTACTGGACGCTGCTGGATGGGTTCTTGACAAAGAATGTGGAACTTTGAAAGATTTGGTGGAGAAGTATCCTAAATATACTTTGATATTTGCGGGACACTCCCTAGGTTCGGGTGTAGCAGCATTGTTAACAATGTTGGTGGTGCAGAATAGGGATAAGTTGGGAGACATTGAGAGGAAGAGGGTTAGGGGATATGCGATTGCACCAGCGAGGTGTATGTCATTGAACTTAGCTGTCAGATATGCAGACGTTATCAATTCTGTTGTGCTTCAGGATGACTTCTTACCACGGACGGCCACACCCTTGGAAGACATTTTCAAGTCGCTTTTCTGTCTGCCATGCCTACTATGTCTACAATGTATGCGGGACACATGTATACCCGAGGAGAAGATGCTCAAAGATCCAAGGAGGCTGTATGCACCCGGCCGCCTCTATCATATTGTTGAGAGAAAGCCCTGCAGGTATTGTTATGCATTTGAAATATACTTTGGCAAATATCTCCTCAACTATATCCATAAACTCGGACTTCAATTCATAAGAGCGAGATTCCATTGTTATCCTCGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

334

Amino Acids

38.18

Weight (kDa)

8.47

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	9 - 75	2.7e-23	Lipase 3 N-terminal region
Lipase_3	PF01764	109 - 244	3.6e-26	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49050
fragaria_vesca	FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770
malus_domestica	MD01G1204700.v1.1 MD07G1273200.v1.1
prunus_persica	Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1
pyrus_communis	pycom01g21420 pycom07g24970 pycom07g24980
rosa_chinensis	RchiOBHm_Chr1g0377761
rosa_multiflora	Rmu_co8163758.1_g000001 Rmu_sc0021958.1_g000001 Rmu_sc0024583.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281080
rosa_rugosa	Rorug01G0404800
rosa_samantha	Rh1AG427500 Rh1CG395700
rosa_wichuraiana	Rw1G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	882
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccI	GTMKAC	2 cut(s)	784, 808
AciI	CCGC	4 cut(s)	157, 524, 796, 859
AclWI	GGATC	1 cut(s)	827
AcoI	YGGCCR	2 cut(s)	726, 856
AcsI	RAATTY	2 cut(s)	131, 404
AcuI	CTGAAG	2 cut(s)	147, 686
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	4 cut(s)	57, 215, 349, 541
AflIII	ACRYGT	1 cut(s)	803
AgsI	TTSAA	5 cut(s)	481, 658, 751, 911, 962
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	903, 935
AluBI	AGCT	3 cut(s)	281, 391, 665
AluI	AGCT	3 cut(s)	281, 391, 665
Alw26I	GTCTC	2 cut(s)	98, 591
AlwI	GGATC	1 cut(s)	827
Ama87I	CYCGRG	2 cut(s)	270, 812
AoxI	GGCC	7 cut(s)	48, 91, 112, 274, 340, 726, 856
ApeKI	GCWGC	3 cut(s)	18, 443, 551
ApoI	RAATTY	2 cut(s)	131, 404
AspA2I	CCTAGG	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	2 cut(s)	233, 855
AvaI	CYCGRG	2 cut(s)	270, 812
AvrII	CCTAGG	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	5, 430, 563
BccI	CCATC	2 cut(s)	404, 444
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	2 cut(s)	233, 855
BcoDI	GTCTC	2 cut(s)	98, 591
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	5 cut(s)	19, 157, 444, 552, 859
BlnI	CCTAGG	1 cut(s)	535
BlsI	GCNGC	5 cut(s)	20, 158, 445, 553, 860
Bme1390I	CCNGG	3 cut(s)	213, 233, 855
BmeT110I	CYCGRG	2 cut(s)	270, 812
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	113, 207
BmrFI	CCNGG	3 cut(s)	213, 233, 855
BmsI	GCATC	3 cut(s)	65, 159, 813
BpiI	GAAGAC	1 cut(s)	747
BpuMI	CCSGG	2 cut(s)	233, 855
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	6 cut(s)	271, 535, 719, 735, 813, 836
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 215, 349, 541
Bse1I	ACTGG	2 cut(s)	120, 441
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	6 cut(s)	271, 535, 719, 735, 813, 836
BseGI	GGATG	2 cut(s)	455, 712
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	4 cut(s)	57, 215, 349, 541
BseNI	ACTGG	2 cut(s)	120, 441
BseRI	GAGGAG	3 cut(s)	273, 830, 923
BseX3I	CGGCCG	1 cut(s)	856
BseXI	GCAGC	3 cut(s)	5, 430, 563
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	596
Bsh1285I	CGRYCG	1 cut(s)	859
BshFI	GGCC	7 cut(s)	50, 93, 114, 276, 342, 728, 858
BsiEI	CGRYCG	1 cut(s)	859
BsiHKCI	CYCGRG	2 cut(s)	270, 812
BsiSI	CCGG	2 cut(s)	233, 855
BslFI	GGGAC	2 cut(s)	540, 812
BslI	CCNNNNNNNGG	4 cut(s)	57, 215, 349, 541
BsmAI	GTCTC	2 cut(s)	98, 591
BsmFI	GGGAC	2 cut(s)	540, 812
BsnI	GGCC	7 cut(s)	50, 93, 114, 276, 342, 728, 858
BsoBI	CYCGRG	2 cut(s)	270, 812
Bsp143I	GATC	4 cut(s)	6, 184, 304, 832
BspACI	CCGC	4 cut(s)	157, 524, 796, 859
BspANI	GGCC	7 cut(s)	50, 93, 114, 276, 342, 728, 858
BspLI	GGNNCC	2 cut(s)	113, 207
BspMAI	CTGCAG	1 cut(s)	893
BspMI	ACCTGC	1 cut(s)	882
BspPI	GGATC	1 cut(s)	827
BsrI	ACTGG	2 cut(s)	120, 441
BssECI	CCNNGG	6 cut(s)	271, 535, 719, 735, 813, 836
BssMI	GATC	4 cut(s)	6, 184, 304, 832
BssNAI	GTATAC	1 cut(s)	809
BssT1I	CCWWGG	3 cut(s)	535, 735, 836
Bst1107I	GTATAC	1 cut(s)	809
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	44, 101
Bst6I	CTCTTC	2 cut(s)	392, 605
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	188, 661
BstDSI	CCRYGG	1 cut(s)	719
BstF5I	GGATG	2 cut(s)	455, 712
BstKTI	GATC	4 cut(s)	9, 187, 307, 835
BstMAI	GTCTC	2 cut(s)	98, 591
BstMBI	GATC	4 cut(s)	6, 184, 304, 832
BstMCI	CGRYCG	1 cut(s)	859
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	807
BstSCI	CCNGG	3 cut(s)	211, 231, 853
BstSFI	CTRYAG	1 cut(s)	889
BstV1I	GCAGC	3 cut(s)	5, 430, 563
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	1 cut(s)	832
BstXI	CCANNNNNNTGG	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	832
BstZ17I	GTATAC	1 cut(s)	809
BstZI	CGGCCG	1 cut(s)	856
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	7 cut(s)	50, 93, 114, 276, 342, 728, 858
BtgI	CCRYGG	1 cut(s)	719
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	455, 712
BtsIMutI	CAGTG	2 cut(s)	106, 127
BveI	ACCTGC	1 cut(s)	882
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	54
CspCI	CAANNNNNGTGG	4 cut(s)	451, 486, 552, 587
CviAII	CATG	4 cut(s)	95, 314, 771, 804
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	188, 661
DpnI	GATC	4 cut(s)	8, 186, 306, 834
DpnII	GATC	4 cut(s)	6, 184, 304, 832
DraIII	CACNNNGTG	1 cut(s)	215
EaeI	YGGCCR	2 cut(s)	726, 856
EagI	CGGCCG	1 cut(s)	856
Eam1104I	CTCTTC	2 cut(s)	392, 605
EarI	CTCTTC	2 cut(s)	392, 605
EclXI	CGGCCG	1 cut(s)	856
Eco130I	CCWWGG	3 cut(s)	535, 735, 836
Eco147I	AGGCCT	1 cut(s)	342
Eco52I	CGGCCG	1 cut(s)	856
Eco57I	CTGAAG	2 cut(s)	147, 686
Eco88I	CYCGRG	2 cut(s)	270, 812
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	3 cut(s)	535, 735, 836
EcoT22I	ATGCAT	1 cut(s)	907
ErhI	CCWWGG	3 cut(s)	535, 735, 836
FaeI	CATG	4 cut(s)	98, 317, 774, 807
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	2 cut(s)	540, 812
FatI	CATG	4 cut(s)	94, 313, 770, 803
FauI	CCCGC	2 cut(s)	517, 789
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	2 cut(s)	784, 808
Fnu4HI	GCNGC	5 cut(s)	19, 157, 444, 552, 859
FokI	GGATG	2 cut(s)	462, 719
Fsp4HI	GCNGC	5 cut(s)	19, 157, 444, 552, 859
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	5 cut(s)	19, 157, 444, 552, 859
GsaI	CCCAGC	1 cut(s)	395
HaeIII	GGCC	7 cut(s)	50, 93, 114, 276, 342, 728, 858
HapII	CCGG	2 cut(s)	233, 855
HgaI	GACGC	1 cut(s)	449
Hin1II	CATG	4 cut(s)	98, 317, 774, 807
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	1 cut(s)	978
HpaI	GTTAAC	1 cut(s)	561
HpaII	CCGG	2 cut(s)	233, 855
Hpy166II	GTNNAC	6 cut(s)	40, 175, 424, 561, 785, 809
Hpy188I	TCNGA	2 cut(s)	671, 956
Hpy188III	TCNNGA	3 cut(s)	302, 458, 704
Hpy8I	GTNNAC	6 cut(s)	40, 175, 424, 561, 785, 809
HpyCH4III	ACNGT	2 cut(s)	44, 101
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	7 cut(s)	371, 577, 635, 677, 851, 891, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	188, 661
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	4 cut(s)	98, 317, 774, 807
Ksp22I	TGATCA	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	6, 184, 304, 832
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	3 cut(s)	5, 430, 563
LweI	GCATC	3 cut(s)	65, 159, 813
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	4 cut(s)	8, 186, 306, 834
MboI	GATC	4 cut(s)	6, 184, 304, 832
MboII	GAAGA	6 cut(s)	140, 191, 409, 622, 752, 832
MflI	RGATCY	1 cut(s)	832
MluCI	AATT	7 cut(s)	131, 225, 243, 346, 404, 688, 962
Mph1103I	ATGCAT	1 cut(s)	907
MseI	TTAA	5 cut(s)	228, 242, 345, 560, 1000
MslI	CAYNNNNRTG	2 cut(s)	99, 312
MspI	CCGG	2 cut(s)	233, 855
MspR9I	CCNGG	3 cut(s)	213, 233, 855
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	156
NciI	CCSGG	2 cut(s)	233, 855
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	4 cut(s)	6, 184, 304, 832
NlaIII	CATG	4 cut(s)	98, 317, 774, 807
NlaIV	GGNNCC	2 cut(s)	113, 207
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	1 cut(s)	807
PceI	AGGCCT	1 cut(s)	342
PciI	ACATGT	1 cut(s)	803
PfeI	GAWTC	1 cut(s)	978
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	20, 158, 445, 553, 860
PscI	ACATGT	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	113, 207
PspPI	GGNCC	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	2 cut(s)	99, 312
SaqAI	TTAA	5 cut(s)	228, 242, 345, 560, 1000
SatI	GCNGC	5 cut(s)	19, 157, 444, 552, 859
Sau3AI	GATC	4 cut(s)	6, 184, 304, 832
Sau96I	GGNCC	1 cut(s)	112
SbfI	CCTGCAGG	1 cut(s)	893
ScrFI	CCNGG	3 cut(s)	213, 233, 855
SdaI	CCTGCAGG	1 cut(s)	893
SetI	ASST	8 cut(s)	214, 283, 393, 541, 647, 667, 684, 896
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	3 cut(s)	65, 159, 813
SfcI	CTRYAG	1 cut(s)	889
SmiMI	CAYNNNNRTG	2 cut(s)	99, 312
Sse8387I	CCTGCAGG	1 cut(s)	893
Sse9I	AATT	7 cut(s)	131, 225, 243, 346, 404, 688, 962
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	4 cut(s)	157, 524, 796, 859
SspMI	CTAG	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	211, 231, 853
StyI	CCWWGG	3 cut(s)	535, 735, 836
TaaI	ACNGT	2 cut(s)	44, 101
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	1 cut(s)	5
TasI	AATT	7 cut(s)	131, 225, 243, 346, 404, 688, 962
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	2 cut(s)	159, 861
TfiI	GAWTC	1 cut(s)	978
Tru1I	TTAA	5 cut(s)	228, 242, 345, 560, 1000
Tru9I	TTAA	5 cut(s)	228, 242, 345, 560, 1000
TscAI	CASTG	2 cut(s)	106, 127
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	3 cut(s)	18, 443, 551
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	955
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	2 cut(s)	106, 127
Van91I	CCANNNNNTGG	1 cut(s)	215
XapI	RAATTY	2 cut(s)	131, 404
XceI	RCATGY	1 cut(s)	807
XmaJI	CCTAGG	1 cut(s)	535
XmiI	GTMKAC	2 cut(s)	784, 808
XspI	CTAG	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.