MD01G1204700.v1.1

Lipase 3 N-terminal region

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
30026548 .. 30029357
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1204700.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGTCAATCCTATGGGGGTGTCCTATCCTTGAGTGTGTTTATTGTCTGGCATGTACCCGCTGGGCGTGGAAGCGATGCCTCCACACAGCGGGTCATGACAGTGAGACTTGGGGCATTTCCACTGCTGAAGAATTTGAGCCTGTTCCTCGCCTTTGCCGCTACATTCTTGCTGTTTACGAAGATGACCTTCGATGCCCTCTTTGGGAACCACCCGGTGGGTATGGAATTAACCCAGATTGTTTAATCTTGAAAAAGACATATGAACATACCGGAGGTCTAGCTCCTCCGTATATATTGTATCTTGATCATGATCATGCCGATATAGTTCTTGCCTTCAGAGGCCTTAACTTGGCAAGAGAGAGTGACTATGCAGTTCTGATGGATAATAAGCTGGGTAAGAGGAAATTTGATGGCGGGTATGTTCACAACGGGCTATTGAAGGCTGCTCAATGGGTCATGGATGCAGAATGTGAAATGTTGAAAGATCTGGTGGAGAAGTATCCAAAATATACTTTGACTTTCACAGGACACTCCCTAGGGTCAGGTGTAGCAGCATTGTTAACAATGTTGGTAGTGAAGAACATGGATAGGTTGGGGGACATTGATCGGAAGAGGGTTAGGGGCTATGCTATTGCACCGGCGAGGTGTATGTCATTGAACTTAGCAGTCAGATATGCGGATGTCATCAATTCTGTTGTGCTTCAGGATGACTTTTTACCGCGGACCGCTACACCGTTGGAAGACATTTTCAAGTCACTTTTCTGTTTGCCGTGCATATTGTCCCTACGATGCATGAGGGACACATGTATACCTGAGGAAAAAATGCTCAAAGATCCAAGGAGGCTCTATGCACCTGGCCGCCTCTATCACATTGTTGAGAGAAAGCCTTTTAGGTGTGGAAGATTTCCGCCCGTTGTCAAGACAGCAGTTCCGGTGGATGGGAGATTTGAGCACATCGTTCTTTCTTGTAATGCCACTTCTGACCACGCCATCATTTGGATAGAGAGAGAAGCCCAGAGGGCTCTAGATTTATTATTGGAGAAAGATCAGATCATGGAGATTCCGTCGAAGCAAAAAATGGAGCGGCAGGAGACGGTGGCCAAAGAGCACTCGGAAGAGCACAAGGCTGCATTACAGAGGGCTGTCACATTGGCCGTGCCTCATGCATATTCACCGTCTCCGTATGGAACTTTTGACGAGAAGGACGAGGAAGATCACCCGAATGGATCAAGCGGGGAGTCTTCGGTTGGTTCGACGAAGAAAAGCAAGTCATTCACGGCGCGGTTTTTCGTGAGAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

49.23

Weight (kDa)

6.71

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 10 - 75 4.2e-25 Lipase 3 N-terminal region
Lipase_3 PF01764 109 - 244 3.3e-27 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 215, 996
AccBSI CCGCTC 1 cut(s) 1084
AccI GTMKAC 1 cut(s) 808
AccII CGCG 2 cut(s) 721, 1282
AclWI GGATC 2 cut(s) 827, 1234
AcoI YGGCCR 3 cut(s) 856, 1098, 1152
AcsI RAATTY 2 cut(s) 131, 404
AcuI CTGAAG 3 cut(s) 147, 319, 686
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 6 cut(s) 88, 202, 215, 349, 938, 996
AflIII ACRYGT 1 cut(s) 803
AgsI TTSAA 5 cut(s) 250, 439, 481, 658, 751
AjnI CCWGG 1 cut(s) 853
AluBI AGCT 2 cut(s) 281, 391
AluI AGCT 2 cut(s) 281, 391
Alw21I GWGCWC 3 cut(s) 954, 1110, 1122
Alw26I GTCTC 3 cut(s) 98, 1085, 1182
AlwI GGATC 2 cut(s) 827, 1234
AoxI GGCC 4 cut(s) 340, 856, 1098, 1152
ApeKI GCWGC 3 cut(s) 443, 551, 1127
ApoI RAATTY 2 cut(s) 131, 404
AspA2I CCTAGG 1 cut(s) 535
AspLEI GCGC 1 cut(s) 1282
AspS9I GGNCC 1 cut(s) 723
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 1164, 1208
AvaII GGWCC 1 cut(s) 723
AvrII CCTAGG 1 cut(s) 535
AxyI CCTNAGG 1 cut(s) 813
BalI TGGCCA 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 1024
BarI GAAGNNNNNNTAC 2 cut(s) 961, 993
BbsI GAAGAC 2 cut(s) 747, 1233
Bbv12I GWGCWC 3 cut(s) 954, 1110, 1122
BbvI GCAGC 3 cut(s) 430, 563, 1114
BccI CCATC 4 cut(s) 373, 404, 932, 998
BceAI ACGGC 3 cut(s) 754, 1139, 1293
BciT130I CCWGG 1 cut(s) 855
BciVI GTATCC 1 cut(s) 510
BclI TGATCA 2 cut(s) 304, 310
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 3 cut(s) 98, 1085, 1182
BfaI CTAG 3 cut(s) 278, 536, 1025
BfuI GTATCC 1 cut(s) 510
BglI GCCNNNNNGGC 1 cut(s) 1019
BglII AGATCT 1 cut(s) 484
BisI GCNGC 6 cut(s) 157, 444, 552, 859, 1085, 1128
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 6 cut(s) 158, 445, 553, 860, 1086, 1129
Bme1390I CCNGG 2 cut(s) 213, 855
Bme18I GGWCC 1 cut(s) 723
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 213, 855
BmsI GCATC 4 cut(s) 65, 182, 451, 779
BpiI GAAGAC 2 cut(s) 747, 1233
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 535, 719, 836
BsaWI WCCGGW 2 cut(s) 269, 931
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 202, 215, 349, 938, 996
Bse118I RCCGGY 1 cut(s) 637
Bse21I CCTNAGG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 3 cut(s) 535, 719, 836
BseGI GGATG 4 cut(s) 466, 685, 712, 943
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 6 cut(s) 88, 202, 215, 349, 938, 996
BseMII CTCAG 1 cut(s) 804
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 3 cut(s) 430, 563, 1114
BseYI CCCAGC 2 cut(s) 60, 391
Bsh1236I CGCG 2 cut(s) 721, 1282
BshFI GGCC 4 cut(s) 342, 858, 1100, 1154
BsiHKAI GWGCWC 3 cut(s) 954, 1110, 1122
BsiSI CCGG 4 cut(s) 213, 270, 638, 932
BslFI GGGAC 3 cut(s) 611, 766, 812
BslI CCNNNNNNNGG 6 cut(s) 88, 202, 215, 349, 938, 996
BsmAI GTCTC 3 cut(s) 98, 1085, 1182
BsmBI CGTCTC 2 cut(s) 1085, 1182
BsmFI GGGAC 3 cut(s) 611, 766, 812
BsnI GGCC 4 cut(s) 342, 858, 1100, 1154
Bsp1286I GDGCHC 4 cut(s) 954, 1024, 1110, 1122
Bsp143I GATC 9 cut(s) 304, 310, 484, 604, 832, 1045, 1050, 1213, 1226
BspANI GGCC 4 cut(s) 342, 858, 1100, 1154
BspCNI CTCAG 1 cut(s) 805
BspFNI CGCG 2 cut(s) 721, 1282
BspHI TCATGA 2 cut(s) 94, 307
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 2 cut(s) 827, 1234
BspQI GCTCTTC 1 cut(s) 1110
BsrBI CCGCTC 1 cut(s) 1084
BsrFI RCCGGY 1 cut(s) 637
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 3 cut(s) 535, 719, 836
BssMI GATC 9 cut(s) 304, 310, 484, 604, 832, 1045, 1050, 1213, 1226
BssNAI GTATAC 1 cut(s) 809
BssT1I CCWWGG 2 cut(s) 535, 836
Bst1107I GTATAC 1 cut(s) 809
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 4 cut(s) 101, 735, 1096, 1176
Bst6I CTCTTC 2 cut(s) 605, 1110
BstDEI CTNAG 2 cut(s) 661, 813
BstDSI CCRYGG 1 cut(s) 719
BstF5I GGATG 4 cut(s) 466, 685, 712, 943
BstFNI CGCG 2 cut(s) 721, 1282
BstHHI GCGC 1 cut(s) 1282
BstKTI GATC 9 cut(s) 307, 313, 487, 607, 835, 1048, 1053, 1216, 1229
BstMAI GTCTC 3 cut(s) 98, 1085, 1182
BstMBI GATC 9 cut(s) 304, 310, 484, 604, 832, 1045, 1050, 1213, 1226
BstMWI GCNNNNNNNGC 2 cut(s) 156, 1019
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 54, 807
BstSCI CCNGG 2 cut(s) 211, 853
BstUI CGCG 2 cut(s) 721, 1282
BstV1I GCAGC 3 cut(s) 430, 563, 1114
BstV2I GAAGAC 2 cut(s) 747, 1233
BstX2I RGATCY 2 cut(s) 484, 832
BstYI RGATCY 2 cut(s) 484, 832
BstZ17I GTATAC 1 cut(s) 809
Bsu36I CCTNAGG 1 cut(s) 813
BsuI GTATCC 1 cut(s) 510
BsuRI GGCC 4 cut(s) 342, 858, 1100, 1154
BtgI CCRYGG 1 cut(s) 719
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 4 cut(s) 466, 685, 712, 943
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 106, 120
CciI TCATGA 2 cut(s) 94, 307
CfoI GCGC 1 cut(s) 1282
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 723
Cfr42I CCGCGG 1 cut(s) 722
CpoI CGGWCCG 1 cut(s) 723
Csp6I GTAC 1 cut(s) 54
CspI CGGWCCG 1 cut(s) 723
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 661, 813
DpnI GATC 9 cut(s) 306, 312, 486, 606, 834, 1047, 1052, 1215, 1228
DpnII GATC 9 cut(s) 304, 310, 484, 604, 832, 1045, 1050, 1213, 1226
DraIII CACNNNGTG 1 cut(s) 215
EaeI YGGCCR 3 cut(s) 856, 1098, 1152
Eam1104I CTCTTC 2 cut(s) 605, 1110
EarI CTCTTC 2 cut(s) 605, 1110
EciI GGCGGA 1 cut(s) 897
Eco130I CCWWGG 2 cut(s) 535, 836
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 1024
Eco47I GGWCC 1 cut(s) 723
Eco57I CTGAAG 3 cut(s) 147, 319, 686
Eco81I CCTNAGG 1 cut(s) 813
EcoRII CCWGG 1 cut(s) 853
EcoT14I CCWWGG 2 cut(s) 535, 836
EcoT22I ATGCAT 2 cut(s) 794, 1168
EcoT38I GRGCYC 1 cut(s) 1024
ErhI CCWWGG 2 cut(s) 535, 836
Esp3I CGTCTC 2 cut(s) 1085, 1182
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 3 cut(s) 611, 766, 812
FauI CCCGC 4 cut(s) 65, 82, 407, 1226
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 2 cut(s) 304, 310
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 6 cut(s) 157, 444, 552, 859, 1085, 1128
FokI GGATG 4 cut(s) 473, 692, 719, 950
FriOI GRGCYC 1 cut(s) 1024
Fsp4HI GCNGC 6 cut(s) 157, 444, 552, 859, 1085, 1128
FspBI CTAG 3 cut(s) 278, 536, 1025
GlaI GCGC 1 cut(s) 1281
GluI GCNGC 6 cut(s) 157, 444, 552, 859, 1085, 1128
GsaI CCCAGC 2 cut(s) 64, 395
HaeIII GGCC 4 cut(s) 342, 858, 1100, 1154
HapII CCGG 4 cut(s) 213, 270, 638, 932
HhaI GCGC 1 cut(s) 1282
Hin6I GCGC 1 cut(s) 1280
HinP1I GCGC 1 cut(s) 1280
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 2 cut(s) 1060, 1238
HpaI GTTAAC 1 cut(s) 561
HpaII CCGG 4 cut(s) 213, 270, 638, 932
HphI GGTGA 2 cut(s) 1164, 1208
Hpy166II GTNNAC 4 cut(s) 175, 424, 561, 809
Hpy188I TCNGA 7 cut(s) 338, 378, 609, 671, 982, 1050, 1114
Hpy188III TCNNGA 8 cut(s) 95, 247, 302, 308, 704, 919, 1025, 1291
Hpy8I GTNNAC 4 cut(s) 175, 424, 561, 809
Hpy99I CGWCG 2 cut(s) 1069, 1258
HpyAV CCTTC 4 cut(s) 197, 343, 433, 1195
HpyCH4III ACNGT 4 cut(s) 101, 735, 1096, 1176
HpyCH4V TGCA 8 cut(s) 371, 464, 635, 774, 792, 851, 1130, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 1019
HpyF3I CTNAG 2 cut(s) 661, 813
HspAI GCGC 1 cut(s) 1280
Ksp22I TGATCA 2 cut(s) 304, 310
KspAI GTTAAC 1 cut(s) 561
KspI CCGCGG 1 cut(s) 722
Kzo9I GATC 9 cut(s) 304, 310, 484, 604, 832, 1045, 1050, 1213, 1226
LguI GCTCTTC 1 cut(s) 1110
LmnI GCTCC 2 cut(s) 286, 1081
Lsp1109I GCAGC 3 cut(s) 430, 563, 1114
LweI GCATC 4 cut(s) 65, 182, 451, 779
MaeI CTAG 3 cut(s) 278, 536, 1025
MaeIII GTNAC 3 cut(s) 362, 753, 1144
MalI GATC 9 cut(s) 306, 312, 486, 606, 834, 1047, 1052, 1215, 1228
MbiI CCGCTC 1 cut(s) 1084
MboI GATC 9 cut(s) 304, 310, 484, 604, 832, 1045, 1050, 1213, 1226
MflI RGATCY 2 cut(s) 484, 832
MhlI GDGCHC 4 cut(s) 954, 1024, 1110, 1122
MlsI TGGCCA 1 cut(s) 1100
MluCI AATT 4 cut(s) 131, 225, 404, 688
MluNI TGGCCA 1 cut(s) 1100
MlyI GAGTC 1 cut(s) 1247
MmeI TCCRAC 1 cut(s) 717
Mox20I TGGCCA 1 cut(s) 1100
Mph1103I ATGCAT 2 cut(s) 794, 1168
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 4 cut(s) 228, 242, 345, 560
MslI CAYNNNNRTG 3 cut(s) 99, 312, 1221
Msp20I TGGCCA 1 cut(s) 1100
MspA1I CMGCKG 3 cut(s) 60, 89, 721
MspI CCGG 4 cut(s) 213, 270, 638, 932
MspR9I CCNGG 2 cut(s) 213, 855
MvaI CCWGG 1 cut(s) 855
MvnI CGCG 2 cut(s) 721, 1282
MwoI GCNNNNNNNGC 2 cut(s) 156, 1019
NciI CCSGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 259
NdeII GATC 9 cut(s) 304, 310, 484, 604, 832, 1045, 1050, 1213, 1226
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 3 cut(s) 362, 753, 1144
NsiI ATGCAT 2 cut(s) 794, 1168
NspI RCATGY 2 cut(s) 54, 807
PagI TCATGA 2 cut(s) 94, 307
PceI AGGCCT 1 cut(s) 342
PciI ACATGT 1 cut(s) 803
PciSI GCTCTTC 1 cut(s) 1110
PcsI WCGNNNNNNNCGW 2 cut(s) 1203, 1250
PfeI GAWTC 1 cut(s) 1060
PflMI CCANNNNNTGG 2 cut(s) 215, 996
PkrI GCNGC 6 cut(s) 158, 445, 553, 860, 1086, 1129
PleI GAGTC 1 cut(s) 1246
PpsI GAGTC 1 cut(s) 1246
PscI ACATGT 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 853
PspFI CCCAGC 2 cut(s) 60, 391
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 723
PsuI RGATCY 2 cut(s) 484, 832
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 3 cut(s) 99, 312, 1221
Rsr2I CGGWCCG 1 cut(s) 723
RsrII CGGWCCG 1 cut(s) 723
SacII CCGCGG 1 cut(s) 722
SapI GCTCTTC 1 cut(s) 1110
SaqAI TTAA 4 cut(s) 228, 242, 345, 560
SatI GCNGC 6 cut(s) 157, 444, 552, 859, 1085, 1128
Sau3AI GATC 9 cut(s) 304, 310, 484, 604, 832, 1045, 1050, 1213, 1226
Sau96I GGNCC 1 cut(s) 723
SchI GAGTC 1 cut(s) 1247
ScrFI CCNGG 2 cut(s) 213, 855
SduI GDGCHC 4 cut(s) 954, 1024, 1110, 1122
SfaNI GCATC 4 cut(s) 65, 182, 451, 779
Sfr303I CCGCGG 1 cut(s) 722
SgrAI CRCCGGYG 1 cut(s) 637
SgrBI CCGCGG 1 cut(s) 722
SinI GGWCC 1 cut(s) 723
SmiMI CAYNNNNRTG 3 cut(s) 99, 312, 1221
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 4 cut(s) 131, 225, 404, 688
SseBI AGGCCT 1 cut(s) 342
SspMI CTAG 3 cut(s) 278, 536, 1025
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 211, 853
StyI CCWWGG 2 cut(s) 535, 836
TaaI ACNGT 4 cut(s) 101, 735, 1096, 1176
TaqI TCGA 3 cut(s) 190, 1067, 1253
TasI AATT 4 cut(s) 131, 225, 404, 688
TauI GCSGC 3 cut(s) 159, 861, 1087
TfiI GAWTC 1 cut(s) 1060
Tru1I TTAA 4 cut(s) 228, 242, 345, 560
Tru9I TTAA 4 cut(s) 228, 242, 345, 560
TscAI CASTG 2 cut(s) 106, 127
TseFI GTSAC 3 cut(s) 362, 753, 1144
TseI GCWGC 3 cut(s) 443, 551, 1127
Tsp45I GTSAC 3 cut(s) 362, 753, 1144
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 3 cut(s) 276, 1053, 1170
TspRI CASTG 2 cut(s) 106, 127
Van91I CCANNNNNTGG 2 cut(s) 215, 996
VpaK11BI GGWCC 1 cut(s) 723
XapI RAATTY 2 cut(s) 131, 404
XbaI TCTAGA 1 cut(s) 1024
XceI RCATGY 2 cut(s) 54, 807
XmaJI CCTAGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 808
XspI CTAG 3 cut(s) 278, 536, 1025
Zsp2I ATGCAT 2 cut(s) 794, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.