Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005618

Physical Location & Seq

Genomic Coordinates Reverse (-)

51169967 .. 51173198

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0404800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAGAATTCCCACGATTTGTGCTGCATAGAGGAGGAAGAAGGGGATGGTACTGGTAGGAAGGCCATGACTTCCACTTCTTATCCCGCCGGCGCCTCTGACTTCCGATTGTTTGGGCGGCAAGGCTCAGTTCATGATTGCTTTGGGGGTGGCCAAGCTGCTGATGTTCTGTTGTGGAGACGGCGGCGTGTTTCTATCGGTGCTATTTTTGCCGCCACAGTCTCTTGGCTTCTGTTTGAGCGATCTGGATTATCATGCTTATCAATCTGCTCAGATATCTTGCTGATTTTGGTTGTATTGCAATTTCTTCGAGCCAACTATGCTGTTTTCCGAAATAAACAATTGCAAGCAATACCAGAGCTAGTGGTATCAGAGGAAATGGTTAACAATGCCGCAGCATCATTTCGTGTTAAAATCAACAACGTGCTGCTTATGGCTCATGACATCACTATAGGAAAAGATTTTAAATTGTTTTTCAAGGTTGTGGTTTGTCTGTGGCTCATGTCTGTCATTGGCAGCTTGTTCTCTTTCTTCACGCTCGCTTATATTGGTTCAGTCCTGTCCATAACAATTCCTGCCTTGTACAGCAAATATGAAGGGACTGTGGATAAGTATTGCGGAAAGATCCACCGGCAATTTTCAAGGCATTATAAAATCGTGGATGAAAGTGTTTTTAACAGACTTCCCAGAAATACATCCAAAGACAAAGACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

238

Amino Acids

26.67

Weight (kDa)

8.66

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	54 - 208	5.8e-48	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49050
fragaria_vesca	FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770
malus_domestica	MD01G1204700.v1.1 MD07G1273200.v1.1
prunus_persica	Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1
pyrus_communis	pycom01g21420 pycom07g24970 pycom07g24980
rosa_chinensis	RchiOBHm_Chr1g0377761
rosa_multiflora	Rmu_co8163758.1_g000001 Rmu_sc0021958.1_g000001 Rmu_sc0024583.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281080
rosa_rugosa	Rorug01G0404800
rosa_samantha	Rh1AG427500 Rh1CG395700
rosa_wichuraiana	Rw1G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	6 cut(s)	87, 118, 184, 213, 393, 618
AclWI	GGATC	1 cut(s)	619
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	2 cut(s)	52, 584
AgsI	TTSAA	2 cut(s)	478, 642
AluBI	AGCT	3 cut(s)	158, 361, 519
AluI	AGCT	3 cut(s)	158, 361, 519
Alw26I	GTCTC	2 cut(s)	172, 226
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	2 cut(s)	63, 151
ApeKI	GCWGC	5 cut(s)	24, 158, 395, 427, 516
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	92
BbvI	GCAGC	5 cut(s)	11, 145, 407, 414, 528
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BcoDI	GTCTC	2 cut(s)	172, 226
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	9 cut(s)	25, 119, 159, 185, 213, 393, 396, 428, 517
BlsI	GCNGC	9 cut(s)	26, 120, 160, 186, 214, 394, 397, 429, 518
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	93
Bse118I	RCCGGY	2 cut(s)	89, 630
Bse1I	ACTGG	1 cut(s)	58
BseGI	GGATG	3 cut(s)	52, 667, 695
BseMII	CTCAG	2 cut(s)	141, 285
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	5 cut(s)	11, 145, 407, 414, 528
BshFI	GGCC	2 cut(s)	65, 153
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	90, 631
BslFI	GGGAC	1 cut(s)	613
BsmAI	GTCTC	2 cut(s)	172, 226
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	65, 153
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	2 cut(s)	242, 624
BspACI	CCGC	6 cut(s)	87, 118, 184, 213, 393, 618
BspANI	GGCC	2 cut(s)	65, 153
BspCNI	CTCAG	2 cut(s)	140, 284
BspHI	TCATGA	2 cut(s)	133, 439
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	619
BspT107I	GGYRCC	1 cut(s)	92
BsrFI	RCCGGY	2 cut(s)	89, 630
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	2 cut(s)	89, 630
BssMI	GATC	2 cut(s)	242, 624
BssNI	GRCGYC	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	220, 604
BstACI	GRCGYC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	3 cut(s)	91, 348, 540
BstDEI	CTNAG	2 cut(s)	127, 271
BstF5I	GGATG	3 cut(s)	52, 667, 695
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	245, 627
BstMAI	GTCTC	2 cut(s)	172, 226
BstMBI	GATC	2 cut(s)	242, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 320
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	5 cut(s)	11, 145, 407, 414, 528
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	65, 153
BtsCI	GGATG	3 cut(s)	52, 667, 695
Cac8I	GCNNGC	3 cut(s)	91, 348, 540
CciI	TCATGA	2 cut(s)	133, 439
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	2 cut(s)	89, 630
Csp6I	GTAC	2 cut(s)	51, 583
CviAII	CATG	5 cut(s)	67, 134, 255, 440, 502
CviQI	GTAC	2 cut(s)	51, 583
DdeI	CTNAG	2 cut(s)	127, 271
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	2 cut(s)	244, 626
DpnII	GATC	2 cut(s)	242, 624
DraI	TTTAAA	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	5 cut(s)	70, 137, 258, 443, 505
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	5 cut(s)	66, 133, 254, 439, 501
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	9 cut(s)	25, 119, 159, 185, 213, 393, 396, 428, 517
FokI	GGATG	3 cut(s)	59, 674, 682
Fsp4HI	GCNGC	9 cut(s)	25, 119, 159, 185, 213, 393, 396, 428, 517
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	9 cut(s)	25, 119, 159, 185, 213, 393, 396, 428, 517
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	65, 153
HapII	CCGG	2 cut(s)	90, 631
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	70, 137, 258, 443, 505
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	90, 631
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	5 cut(s)	100, 107, 274, 332, 373
Hpy188III	TCNNGA	3 cut(s)	134, 246, 440
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	3 cut(s)	35, 55, 590
HpyCH4III	ACNGT	2 cut(s)	220, 604
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	27, 301, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 320
HpyF3I	CTNAG	2 cut(s)	127, 271
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	70, 137, 258, 443, 505
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	242, 624
LpnPI	CCDG	8 cut(s)	39, 103, 231, 369, 572, 588, 644, 700
Lsp1109I	GCAGC	5 cut(s)	11, 145, 407, 414, 528
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	423
MalI	GATC	2 cut(s)	244, 626
MboI	GATC	2 cut(s)	242, 624
MboII	GAAGA	3 cut(s)	50, 299, 523
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	1 cut(s)	624
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	6 cut(s)	7, 302, 341, 467, 570, 635
MluNI	TGGCCA	1 cut(s)	153
Mly113I	GGCGCC	1 cut(s)	93
MnlI	CCTC	4 cut(s)	25, 28, 106, 367
Mox20I	TGGCCA	1 cut(s)	153
MreI	CGCCGGCG	1 cut(s)	89
MroNI	GCCGGC	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	5 cut(s)	384, 411, 465, 675, 715
Msp20I	TGGCCA	1 cut(s)	153
MspI	CCGG	2 cut(s)	90, 631
MunI	CAATTG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	209, 320
NaeI	GCCGGC	1 cut(s)	91
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	2 cut(s)	242, 624
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	5 cut(s)	70, 137, 258, 443, 505
NlaIV	GGNNCC	1 cut(s)	94
PagI	TCATGA	2 cut(s)	133, 439
PdiI	GCCGGC	1 cut(s)	91
PkrI	GCNGC	9 cut(s)	26, 120, 160, 186, 214, 394, 397, 429, 518
PluTI	GGCGCC	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	2 cut(s)	52, 584
RsaNI	GTAC	2 cut(s)	51, 583
SaqAI	TTAA	5 cut(s)	384, 411, 465, 675, 715
SatI	GCNGC	9 cut(s)	25, 119, 159, 185, 213, 393, 396, 428, 517
Sau3AI	GATC	2 cut(s)	242, 624
SetI	ASST	5 cut(s)	160, 363, 426, 483, 521
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	450
SfoI	GGCGCC	1 cut(s)	94
SgrAI	CRCCGGYG	1 cut(s)	89
Sse9I	AATT	6 cut(s)	7, 302, 341, 467, 570, 635
SsiI	CCGC	6 cut(s)	87, 118, 184, 213, 393, 618
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	220, 604
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	310
TasI	AATT	6 cut(s)	7, 302, 341, 467, 570, 635
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	4 cut(s)	121, 187, 215, 395
Tru1I	TTAA	5 cut(s)	384, 411, 465, 675, 715
Tru9I	TTAA	5 cut(s)	384, 411, 465, 675, 715
TseI	GCWGC	5 cut(s)	24, 158, 395, 427, 516
TspDTI	ATGAA	3 cut(s)	122, 609, 678
XapI	RAATTY	1 cut(s)	7
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.