Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021958.1

Orthogroup ID

OG0005618

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1692

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021958.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 665 bp

ttaggggatatgcgattgcaccagcgaggtgtatgtcattgaacttagctgtcagatatgcagacgttatcaattctgttgtgcttcaggatgacttcttaccacggacagccacacccttggaagacattttcaagtcacttttctgtttgccgtgcctactatgcctacgatgtatgcgggacacatgtatacctgaggagaagatgctaaaagatccaaggaggctgtatgcacctggccgcctctatcatattgttgagagaaaaccttgcaggttaggaaggtttcccccagttgtcaagacagcagtgcccgtagatgggaggtttgagcacatagttctctcttgcaatgccacttcagatcatgccatcatttggatagagagagaagctcaaagggcactagatttaatgttggagaaagctcaaagtatggagattccaccaaagcaaagaatggagcgtcaggagacagtagcgaaagaacacaccgaggagtataaggctgcattacagagggctgtcacattggccgtgcctcacgcgtactcaccatcaccatacggaacttttgatgagcgggaagaggaggagcactcaagcggggaatcgtctttcggttcaactaagaaaagcaagacatttgtagagcggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

220

Amino Acids

25.16

Weight (kDa)

7.72

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49050
fragaria_vesca	FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770
malus_domestica	MD01G1204700.v1.1 MD07G1273200.v1.1
prunus_persica	Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1
pyrus_communis	pycom01g21420 pycom07g24970 pycom07g24980
rosa_chinensis	RchiOBHm_Chr1g0377761
rosa_multiflora	Rmu_co8163758.1_g000001 Rmu_sc0021958.1_g000001 Rmu_sc0024583.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281080
rosa_rugosa	Rorug01G0404800
rosa_samantha	Rh1AG427500 Rh1CG395700
rosa_wichuraiana	Rw1G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccBSI	CCGCTC	2 cut(s)	585, 657
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	550
AciI	CCGC	5 cut(s)	180, 243, 585, 608, 657
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	2 cut(s)	240, 536
AcuI	CTGAAG	2 cut(s)	70, 347
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	3 cut(s)	322, 323, 380
AflIII	ACRYGT	2 cut(s)	187, 548
AgsI	TTSAA	3 cut(s)	42, 135, 629
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	49, 397, 430
AluI	AGCT	3 cut(s)	49, 397, 430
Alw21I	GWGCWC	2 cut(s)	338, 602
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	2 cut(s)	240, 536
ApeKI	GCWGC	1 cut(s)	511
AsuHPI	GGTGA	2 cut(s)	548, 554
AxyI	CCTNAGG	1 cut(s)	197
BaeGI	GKGCMC	2 cut(s)	317, 408
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	2 cut(s)	338, 602
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	3 cut(s)	316, 382, 567
BceAI	ACGGC	2 cut(s)	138, 523
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	409
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	243, 512
BlsI	GCNGC	2 cut(s)	244, 513
Bme1390I	CCNGG	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	131
BplI	GAGNNNNNCTC	4 cut(s)	381, 413, 586, 618
BpuEI	CTTGAG	1 cut(s)	588
BsaJI	CCNNGG	4 cut(s)	103, 119, 220, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 323, 380
Bse1I	ACTGG	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	4 cut(s)	103, 119, 220, 497
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	3 cut(s)	322, 323, 380
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	4 cut(s)	214, 514, 607, 610
BseSI	GKGCMC	2 cut(s)	317, 408
BseXI	GCAGC	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	550
BshFI	GGCC	2 cut(s)	242, 538
BsiHKAI	GWGCWC	2 cut(s)	338, 602
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	3 cut(s)	322, 323, 380
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	242, 538
Bsp1286I	GDGCHC	4 cut(s)	317, 338, 408, 602
Bsp143I	GATC	2 cut(s)	216, 366
BspACI	CCGC	5 cut(s)	180, 243, 585, 608, 657
BspANI	GGCC	2 cut(s)	242, 538
BspCNI	CTCAG	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	211
BsrBI	CCGCTC	2 cut(s)	585, 657
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	4 cut(s)	103, 119, 220, 497
BssMI	GATC	2 cut(s)	216, 366
BssNAI	GTATAC	1 cut(s)	193
BssT1I	CCWWGG	2 cut(s)	119, 220
Bst1107I	GTATAC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	584
BstDEI	CTNAG	3 cut(s)	45, 197, 632
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	550
BstKTI	GATC	2 cut(s)	219, 369
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	2 cut(s)	216, 366
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 403
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	237
BstSLI	GKGCMC	2 cut(s)	317, 408
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	498
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	216
BstZ17I	GTATAC	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	242, 538
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	266
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	2 cut(s)	188, 370
CviJI	RGCY	9 cut(s)	49, 112, 228, 242, 397, 430, 511, 526, 538
CviKI_1	RGCY	9 cut(s)	49, 112, 228, 242, 397, 430, 511, 526, 538
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	3 cut(s)	45, 197, 632
DpnI	GATC	2 cut(s)	218, 368
DpnII	GATC	2 cut(s)	216, 366
EaeI	YGGCCR	2 cut(s)	240, 536
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco130I	CCWWGG	2 cut(s)	119, 220
Eco57I	CTGAAG	2 cut(s)	70, 347
Eco81I	CCTNAGG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	119, 220
ErhI	CCWWGG	2 cut(s)	119, 220
FaeI	CATG	2 cut(s)	191, 373
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	187, 369
FauI	CCCGC	3 cut(s)	173, 578, 601
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	243, 512
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	243, 512
FspBI	CTAG	1 cut(s)	409
GluI	GCNGC	2 cut(s)	243, 512
HaeIII	GGCC	2 cut(s)	242, 538
HgaI	GACGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	191, 373
HinfI	GANTC	2 cut(s)	444, 613
HphI	GGTGA	2 cut(s)	548, 554
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	55, 366
Hpy188III	TCNNGA	3 cut(s)	88, 303, 472
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	6 cut(s)	19, 61, 235, 275, 353, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 403
HpyF3I	CTNAG	3 cut(s)	45, 197, 632
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	191, 373
Kzo9I	GATC	2 cut(s)	216, 366
LmnI	GCTCC	2 cut(s)	465, 597
LpnPI	CCDG	8 cut(s)	35, 73, 209, 224, 251, 261, 308, 457
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	409
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	137, 528
MalI	GATC	2 cut(s)	218, 368
MbiI	CCGCTC	2 cut(s)	585, 657
MboI	GATC	2 cut(s)	216, 366
MboII	GAAGA	3 cut(s)	136, 216, 601
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	4 cut(s)	317, 338, 408, 602
MluCI	AATT	1 cut(s)	72
MluI	ACGCGT	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	401
MseI	TTAA	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	2 cut(s)	164, 403
NdeII	GATC	2 cut(s)	216, 366
NlaIII	CATG	2 cut(s)	191, 373
NmuCI	GTSAC	2 cut(s)	137, 528
NspI	RCATGY	1 cut(s)	191
PciI	ACATGT	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	444, 613
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	244, 513
PscI	ACATGT	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	2 cut(s)	243, 512
Sau3AI	GATC	2 cut(s)	216, 366
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	4 cut(s)	317, 338, 408, 602
SfaNI	GCATC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	5 cut(s)	180, 243, 585, 608, 657
SspMI	CTAG	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	119, 220
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	1 cut(s)	68
TasI	AATT	1 cut(s)	72
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	444, 613
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	2 cut(s)	137, 528
TseI	GCWGC	1 cut(s)	511
Tsp45I	GTSAC	2 cut(s)	137, 528
TspGWI	ACGGA	2 cut(s)	120, 584
TspRI	CASTG	1 cut(s)	317
Van91I	CCANNNNNTGG	1 cut(s)	380
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.