Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005618

Physical Location & Seq

Genomic Coordinates Forward (+)

28735872 .. 28739353

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G296900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTCAATCCTATGTGGCTGCCCTCTCATTGAGTGCGTTTACTGTCTGGCATGTACCCGCTGGGCTTGGAAGCGATGCCTCCACACAGCGGGTCATGACAGTGAGACTTGGGGCATTGCCACTGCTGAAGAATTCGAGCCTGTTCCTCGCCTTTGCCGCTACATTCTAGCTGTTTATGAAGATGACCTTCGTCAACCCCTTTGGGAGCCCCCTGGTGGGTATGGAATTAAACCAGATTGGTTAATTTTGAAAAAGACATATGAAGATACTCAAGGACAAGCTCCTCCATATATATTATATCTTGATCATGACCATGCTGATATAGTTCTCGCCTTCAGAGGCCTTAACTTGGCAAGAGAGAGTGACTATGCAGTTCTTATGGATAATAAGCTGGGCAAGAAGAAATTTGATGGCGGGTATGTTCACAATGGGCTATTGAAAGCCGCTGAATGGGTTCTGGATGCAGAATGTGAGATTTTGAAAGATTTGGTAGAGAAGTATCCAAATTATACTTTGACTTTCACGGGACACTCCCTAGGGTCCGGTGTAGCAGCATTGTTAACAATGGTGGTGGTGCAGAACAGGGATAGGTTGGGGAACATTGATCGGAAGAGGGTTAGGGGCTATGCTATTGCACCTGCGAGGTGTATGTCATTGAACTTAGCCGTCAGATACGCAGATGTCATCAATTCTGTTGTGCTTCAGGATGACTTCTTACCTCGGACAGCTACACCCTTGGAAGACATTTTCAAGTCACTTTTCTGTTTGCCATGCCTACTGTGCATACGATGCATGAGGGACACATGCATACCTGAGGAGAAGATGCTCAAAGATCCAAGGAGGCTGTACGCACCTGGCCGCCTCTATCACATTGTTGAAAGAAAGCCTTTTAGGTTAGGAAGGTTTCCCCCAGTGGTCAAGACTGCAGTGCCCGTAGATGGGCGATTTGAGCACATAGTTCTTTCTTGTAATGCCACTTCAGACCATGCCATCATTTGGATAGAGAGAGAAGCCCAAAGGGCTCTAAAGTTAATGTTGGAGAAAGATCAAATTATGGAGATACCGCCGAAGCAAAAAATGGAGCGGCAGGAGACGTTAGCTAAAGAACACACTGAGGAGTACAGGGCTGCATTGCAGAGGGCTGTCACGTTGGCCGTGCCTCACGCATATTCACCATCTATCTATGGAACTTTTGATGAGAAGGATGAGGAGGAGTATTCATATGGATCCAGTGGGGAATCTTCTTTTAGTTCCACTAAGAAAAGCAAGACATTTGTTGTGCGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

430

Amino Acids

48.95

Weight (kDa)

6.61

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49050
fragaria_vesca	FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770
malus_domestica	MD01G1204700.v1.1 MD07G1273200.v1.1
prunus_persica	Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1
pyrus_communis	pycom01g21420 pycom07g24970 pycom07g24980
rosa_chinensis	RchiOBHm_Chr1g0377761
rosa_multiflora	Rmu_co8163758.1_g000001 Rmu_sc0021958.1_g000001 Rmu_sc0024583.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281080
rosa_rugosa	Rorug01G0404800
rosa_samantha	Rh1AG427500 Rh1CG395700
rosa_wichuraiana	Rw1G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	646
Acc36I	ACCTGC	1 cut(s)	646
AccB7I	CCANNNNNTGG	1 cut(s)	996
AccBSI	CCGCTC	1 cut(s)	1084
AciI	CCGC	9 cut(s)	58, 89, 157, 414, 444, 859, 1064, 1084, 1282
AclWI	GGATC	3 cut(s)	827, 1221, 1234
AcoI	YGGCCR	2 cut(s)	856, 1152
AcsI	RAATTY	2 cut(s)	131, 404
AcuI	CTGAAG	4 cut(s)	147, 319, 686, 963
AfaI	GTAC	3 cut(s)	55, 848, 1121
AfiI	CCNNNNNNNGG	8 cut(s)	88, 215, 216, 349, 450, 938, 939, 996
AgsI	TTSAA	6 cut(s)	250, 439, 481, 658, 751, 878
AjnI	CCWGG	2 cut(s)	211, 853
AluBI	AGCT	5 cut(s)	170, 281, 391, 728, 1100
AluI	AGCT	5 cut(s)	170, 281, 391, 728, 1100
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	2 cut(s)	98, 1085
AlwI	GGATC	3 cut(s)	827, 1221, 1234
AoxI	GGCC	3 cut(s)	340, 856, 1152
ApeKI	GCWGC	3 cut(s)	18, 551, 1127
ApoI	RAATTY	2 cut(s)	131, 404
Asp700I	GAANNNNTTC	1 cut(s)	453
AspA2I	CCTAGG	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	1164
AvaII	GGWCC	1 cut(s)	540
AvrII	CCTAGG	1 cut(s)	535
AxyI	CCTNAGG	1 cut(s)	813
BaeGI	GKGCMC	1 cut(s)	933
BamHI	GGATCC	1 cut(s)	1226
BanII	GRGCYC	2 cut(s)	210, 1024
BarI	GAAGNNNNNNTAC	2 cut(s)	961, 993
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	954
BbvI	GCAGC	3 cut(s)	5, 563, 1114
BccI	CCATC	4 cut(s)	404, 932, 998, 1183
BceAI	ACGGC	2 cut(s)	650, 1139
BciT130I	CCWGG	2 cut(s)	213, 855
BciVI	GTATCC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	98, 1085
BfaI	CTAG	2 cut(s)	167, 536
BfmI	CTRYAG	1 cut(s)	924
BfuAI	ACCTGC	1 cut(s)	646
BfuI	GTATCC	1 cut(s)	510
BglI	GCCNNNNNGGC	1 cut(s)	1019
BisI	GCNGC	7 cut(s)	19, 157, 444, 552, 859, 1085, 1128
BlnI	CCTAGG	1 cut(s)	535
BlsI	GCNGC	7 cut(s)	20, 158, 445, 553, 860, 1086, 1129
Bme1390I	CCNGG	2 cut(s)	213, 855
Bme18I	GGWCC	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	3 cut(s)	207, 541, 1228
BmrFI	CCNGG	2 cut(s)	213, 855
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	4 cut(s)	65, 451, 779, 813
BmuI	ACTGGG	1 cut(s)	905
BoxI	GACNNNNGTC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	255
BsaJI	CCNNGG	5 cut(s)	211, 535, 719, 735, 836
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	8 cut(s)	88, 215, 216, 349, 450, 938, 939, 996
Bse1I	ACTGG	2 cut(s)	911, 1230
Bse21I	CCTNAGG	1 cut(s)	813
Bse3DI	GCAATG	2 cut(s)	114, 1130
BseBI	CCWGG	2 cut(s)	213, 855
BseDI	CCNNGG	5 cut(s)	211, 535, 719, 735, 836
BseGI	GGATG	3 cut(s)	466, 712, 1210
BseLI	CCNNNNNNNGG	8 cut(s)	88, 215, 216, 349, 450, 938, 939, 996
BseMI	GCAATG	2 cut(s)	114, 1130
BseMII	CTCAG	2 cut(s)	804, 1104
BseNI	ACTGG	2 cut(s)	911, 1230
BseRI	GAGGAG	5 cut(s)	273, 830, 1130, 1223, 1226
BseSI	GKGCMC	1 cut(s)	933
BseXI	GCAGC	3 cut(s)	5, 563, 1114
BseYI	CCCAGC	2 cut(s)	60, 391
BsgI	GTGCAG	1 cut(s)	596
BshFI	GGCC	3 cut(s)	342, 858, 1154
BsiHKAI	GWGCWC	1 cut(s)	954
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	2 cut(s)	540, 812
BslI	CCNNNNNNNGG	8 cut(s)	88, 215, 216, 349, 450, 938, 939, 996
BsmAI	GTCTC	2 cut(s)	98, 1085
BsmBI	CGTCTC	1 cut(s)	1085
BsmFI	GGGAC	2 cut(s)	540, 812
BsnI	GGCC	3 cut(s)	342, 858, 1154
Bsp1286I	GDGCHC	4 cut(s)	210, 933, 954, 1024
Bsp143I	GATC	5 cut(s)	304, 604, 832, 1045, 1226
BspACI	CCGC	9 cut(s)	58, 89, 157, 414, 444, 859, 1064, 1084, 1282
BspANI	GGCC	3 cut(s)	342, 858, 1154
BspCNI	CTCAG	2 cut(s)	805, 1105
BspHI	TCATGA	2 cut(s)	94, 307
BspLI	GGNNCC	3 cut(s)	207, 541, 1228
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	3 cut(s)	827, 1221, 1234
BsrBI	CCGCTC	1 cut(s)	1084
BsrDI	GCAATG	2 cut(s)	114, 1130
BsrI	ACTGG	2 cut(s)	911, 1230
BssECI	CCNNGG	5 cut(s)	211, 535, 719, 735, 836
BssMI	GATC	5 cut(s)	304, 604, 832, 1045, 1226
BssT1I	CCWWGG	3 cut(s)	535, 735, 836
Bst2UI	CCWGG	2 cut(s)	213, 855
Bst4CI	ACNGT	3 cut(s)	44, 101, 780
Bst6I	CTCTTC	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	789
BstDEI	CTNAG	4 cut(s)	661, 813, 1113, 1257
BstF5I	GGATG	3 cut(s)	466, 712, 1210
BstKTI	GATC	5 cut(s)	307, 607, 835, 1048, 1229
BstMAI	GTCTC	2 cut(s)	98, 1085
BstMBI	GATC	5 cut(s)	304, 604, 832, 1045, 1226
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 780, 789, 949, 1019
BstNI	CCWGG	2 cut(s)	213, 855
BstNSI	RCATGY	2 cut(s)	54, 807
BstPAI	GACNNNNGTC	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	211, 853
BstSFI	CTRYAG	1 cut(s)	924
BstSLI	GKGCMC	1 cut(s)	933
BstV1I	GCAGC	3 cut(s)	5, 563, 1114
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	2 cut(s)	832, 1226
BstYI	RGATCY	2 cut(s)	832, 1226
Bsu36I	CCTNAGG	1 cut(s)	813
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	342, 858, 1154
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	466, 712, 1210
BtsI	GCAGTG	2 cut(s)	120, 933
BtsIMutI	CAGTG	6 cut(s)	106, 120, 918, 933, 1110, 1237
BveI	ACCTGC	1 cut(s)	646
CciI	TCATGA	2 cut(s)	94, 307
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	3 cut(s)	54, 847, 1120
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	8 cut(s)	51, 95, 308, 314, 771, 793, 804, 986
CviQI	GTAC	3 cut(s)	54, 847, 1120
DdeI	CTNAG	4 cut(s)	661, 813, 1113, 1257
DpnI	GATC	5 cut(s)	306, 606, 834, 1047, 1228
DpnII	GATC	5 cut(s)	304, 604, 832, 1045, 1226
EaeI	YGGCCR	2 cut(s)	856, 1152
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	3 cut(s)	535, 735, 836
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	2 cut(s)	210, 1024
Eco47I	GGWCC	1 cut(s)	540
Eco57I	CTGAAG	4 cut(s)	147, 319, 686, 963
Eco81I	CCTNAGG	1 cut(s)	813
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	211, 853
EcoT14I	CCWWGG	3 cut(s)	535, 735, 836
EcoT22I	ATGCAT	2 cut(s)	794, 809
EcoT38I	GRGCYC	2 cut(s)	210, 1024
ErhI	CCWWGG	3 cut(s)	535, 735, 836
Esp3I	CGTCTC	1 cut(s)	1085
FaeI	CATG	8 cut(s)	54, 98, 311, 317, 774, 796, 807, 989
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 871, 903
FaqI	GGGAC	2 cut(s)	540, 812
FatI	CATG	8 cut(s)	50, 94, 307, 313, 770, 792, 803, 985
FauI	CCCGC	3 cut(s)	65, 82, 407
FauNDI	CATATG	2 cut(s)	259, 1222
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	7 cut(s)	19, 157, 444, 552, 859, 1085, 1128
FokI	GGATG	3 cut(s)	473, 719, 1217
FriOI	GRGCYC	2 cut(s)	210, 1024
Fsp4HI	GCNGC	7 cut(s)	19, 157, 444, 552, 859, 1085, 1128
FspBI	CTAG	2 cut(s)	167, 536
GluI	GCNGC	7 cut(s)	19, 157, 444, 552, 859, 1085, 1128
GsaI	CCCAGC	2 cut(s)	64, 395
HaeIII	GGCC	3 cut(s)	342, 858, 1154
HapII	CCGG	1 cut(s)	543
Hin1II	CATG	8 cut(s)	54, 98, 311, 317, 774, 796, 807, 989
HincII	GTYRAC	2 cut(s)	194, 561
HindII	GTYRAC	2 cut(s)	194, 561
HinfI	GANTC	1 cut(s)	1238
HpaI	GTTAAC	1 cut(s)	561
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	1 cut(s)	1164
Hpy166II	GTNNAC	4 cut(s)	40, 194, 424, 561
Hpy188I	TCNGA	5 cut(s)	338, 609, 671, 723, 982
Hpy188III	TCNNGA	6 cut(s)	95, 302, 308, 458, 704, 919
Hpy8I	GTNNAC	4 cut(s)	40, 194, 424, 561
HpyAV	CCTTC	4 cut(s)	197, 343, 894, 1195
HpyCH4III	ACNGT	3 cut(s)	44, 101, 780
HpyCH4IV	ACGT	2 cut(s)	1094, 1148
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 780, 789, 949, 1019
HpyF3I	CTNAG	4 cut(s)	661, 813, 1113, 1257
HpySE526I	ACGT	2 cut(s)	1094, 1148
Hsp92II	CATG	8 cut(s)	54, 98, 311, 317, 774, 796, 807, 989
Ksp22I	TGATCA	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	304, 604, 832, 1045, 1226
LmnI	GCTCC	3 cut(s)	205, 286, 1081
Lsp1109I	GCAGC	3 cut(s)	5, 563, 1114
LweI	GCATC	4 cut(s)	65, 451, 779, 813
MaeI	CTAG	2 cut(s)	167, 536
MaeII	ACGT	2 cut(s)	1094, 1148
MaeIII	GTNAC	3 cut(s)	362, 753, 1144
MalI	GATC	5 cut(s)	306, 606, 834, 1047, 1228
MbiI	CCGCTC	1 cut(s)	1084
MboI	GATC	5 cut(s)	304, 604, 832, 1045, 1226
MboII	GAAGA	8 cut(s)	140, 191, 275, 412, 622, 752, 832, 1233
MflI	RGATCY	2 cut(s)	832, 1226
MhlI	GDGCHC	4 cut(s)	210, 933, 954, 1024
MluCI	AATT	7 cut(s)	131, 225, 243, 404, 505, 688, 1050
MmeI	TCCRAC	1 cut(s)	1017
Mph1103I	ATGCAT	2 cut(s)	794, 809
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	5 cut(s)	228, 242, 345, 560, 1031
MslI	CAYNNNNRTG	2 cut(s)	99, 312
MspA1I	CMGCKG	3 cut(s)	60, 89, 446
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	2 cut(s)	213, 855
MvaI	CCWGG	2 cut(s)	213, 855
MwoI	GCNNNNNNNGC	5 cut(s)	156, 780, 789, 949, 1019
NdeI	CATATG	2 cut(s)	259, 1222
NdeII	GATC	5 cut(s)	304, 604, 832, 1045, 1226
NlaIII	CATG	8 cut(s)	54, 98, 311, 317, 774, 796, 807, 989
NlaIV	GGNNCC	3 cut(s)	207, 541, 1228
NmuCI	GTSAC	3 cut(s)	362, 753, 1144
NsiI	ATGCAT	2 cut(s)	794, 809
NspI	RCATGY	2 cut(s)	54, 807
PagI	TCATGA	2 cut(s)	94, 307
PaqCI	CACCTGC	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	1238
PflMI	CCANNNNNTGG	1 cut(s)	996
PkrI	GCNGC	7 cut(s)	20, 158, 445, 553, 860, 1086, 1129
PshAI	GACNNNNGTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	211, 853
PspFI	CCCAGC	2 cut(s)	60, 391
PspGI	CCWGG	2 cut(s)	211, 853
PspN4I	GGNNCC	3 cut(s)	207, 541, 1228
PspPI	GGNCC	1 cut(s)	540
PstI	CTGCAG	1 cut(s)	928
PsuI	RGATCY	2 cut(s)	832, 1226
RsaI	GTAC	3 cut(s)	55, 848, 1121
RsaNI	GTAC	3 cut(s)	54, 847, 1120
RseI	CAYNNNNRTG	2 cut(s)	99, 312
SaqAI	TTAA	5 cut(s)	228, 242, 345, 560, 1031
SatI	GCNGC	7 cut(s)	19, 157, 444, 552, 859, 1085, 1128
Sau3AI	GATC	5 cut(s)	304, 604, 832, 1045, 1226
Sau96I	GGNCC	1 cut(s)	540
ScrFI	CCNGG	2 cut(s)	213, 855
SduI	GDGCHC	4 cut(s)	210, 933, 954, 1024
SfaNI	GCATC	4 cut(s)	65, 451, 779, 813
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	2 cut(s)	99, 312
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	7 cut(s)	131, 225, 243, 404, 505, 688, 1050
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	9 cut(s)	58, 89, 157, 414, 444, 859, 1064, 1084, 1282
SspMI	CTAG	2 cut(s)	167, 536
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	211, 853
StyI	CCWWGG	3 cut(s)	535, 735, 836
TaaI	ACNGT	3 cut(s)	44, 101, 780
TaiI	ACGT	2 cut(s)	1097, 1151
TaqI	TCGA	1 cut(s)	135
TasI	AATT	7 cut(s)	131, 225, 243, 404, 505, 688, 1050
TatI	WGTACW	1 cut(s)	1119
TauI	GCSGC	4 cut(s)	159, 446, 861, 1087
TfiI	GAWTC	1 cut(s)	1238
Tru1I	TTAA	5 cut(s)	228, 242, 345, 560, 1031
Tru9I	TTAA	5 cut(s)	228, 242, 345, 560, 1031
TscAI	CASTG	6 cut(s)	106, 127, 918, 933, 1117, 1237
TseFI	GTSAC	3 cut(s)	362, 753, 1144
TseI	GCWGC	3 cut(s)	18, 551, 1127
Tsp45I	GTSAC	3 cut(s)	362, 753, 1144
TspDTI	ATGAA	3 cut(s)	192, 276, 1209
TspRI	CASTG	6 cut(s)	106, 127, 918, 933, 1117, 1237
Van91I	CCANNNNNTGG	1 cut(s)	996
VpaK11BI	GGWCC	1 cut(s)	540
XapI	RAATTY	2 cut(s)	131, 404
XceI	RCATGY	2 cut(s)	54, 807
XmaJI	CCTAGG	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	2 cut(s)	167, 536
Zsp2I	ATGCAT	2 cut(s)	794, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.