Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8163758.1

Orthogroup ID

OG0005618

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 548

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8163758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 547 bp

atgtcgatcctatgcggctgccctctccttgagtgtgtttactgtctggcatgtactcgttgggcttataagcgatgcctccacacggcaggccatgacagtgagacatggggcctttccagtgccgaagaatttgagcctgtccctcgcatctgccggtacattctagctgtttatgaagatgatcttaggcaaccactttgggaacctcctggtgggtatggaataaacccagattggttaatttcgaaacgaacatatgtagatacccaagggcaagctccaccttatatattgtatcttgatcataatcatgccgatatagttcttgcctttagaggccttaatttggcaagagagagtgactatgcagttttattggacaataagctggggaagaggaaatttgatggtggatacgttcacaacgggctattgaatgcagctggatgggttcttgatgcagaatgtgaaactctgaaagatttggtggggaaatatccaaaatatactttgacattcgcgggacactccctaggttcaggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

182

Amino Acids

20.4

Weight (kDa)

5.64

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49050
fragaria_vesca	FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770
malus_domestica	MD01G1204700.v1.1 MD07G1273200.v1.1
prunus_persica	Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1
pyrus_communis	pycom01g21420 pycom07g24970 pycom07g24980
rosa_chinensis	RchiOBHm_Chr1g0377761
rosa_multiflora	Rmu_co8163758.1_g000001 Rmu_sc0021958.1_g000001 Rmu_sc0024583.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281080
rosa_rugosa	Rorug01G0404800
rosa_samantha	Rh1AG427500 Rh1CG395700
rosa_wichuraiana	Rw1G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AccII	CGCG	1 cut(s)	524
AciI	CCGC	2 cut(s)	15, 524
AcsI	RAATTY	2 cut(s)	131, 404
AfaI	GTAC	2 cut(s)	55, 161
AfiI	CCNNNNNNNGG	3 cut(s)	85, 215, 349
AgsI	TTSAA	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	4 cut(s)	170, 281, 391, 446
AluI	AGCT	4 cut(s)	170, 281, 391, 446
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	3 cut(s)	91, 112, 340
ApeKI	GCWGC	2 cut(s)	18, 443
ApoI	RAATTY	2 cut(s)	131, 404
AspA2I	CCTAGG	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	5, 455
BccI	CCATC	2 cut(s)	404, 444
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	167, 536
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	3 cut(s)	16, 19, 444
BlnI	CCTAGG	1 cut(s)	535
BlsI	GCNGC	3 cut(s)	17, 20, 445
Bme1390I	CCNGG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	113, 207
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	3 cut(s)	65, 159, 451
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	271, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 215, 349
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	271, 535
BseGI	GGATG	1 cut(s)	455
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	85, 215, 349
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	5, 455
BseYI	CCCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	3 cut(s)	93, 114, 342
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	2 cut(s)	128, 540
BslI	CCNNNNNNNGG	3 cut(s)	85, 215, 349
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	128, 540
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	93, 114, 342
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	6, 184, 304
BspACI	CCGC	2 cut(s)	15, 524
BspANI	GGCC	3 cut(s)	93, 114, 342
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	2 cut(s)	113, 207
BspT104I	TTCGAA	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	271, 535
BssMI	GATC	3 cut(s)	6, 184, 304
BssT1I	CCWWGG	2 cut(s)	271, 535
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	44, 101
Bst6I	CTCTTC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	91, 279
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	524
BstKTI	GATC	3 cut(s)	9, 187, 307
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	6, 184, 304
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	2 cut(s)	5, 455
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	93, 114, 342
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	2 cut(s)	106, 127
Cac8I	GCNNGC	2 cut(s)	91, 279
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	54, 160
CviAII	CATG	4 cut(s)	51, 95, 108, 314
CviQI	GTAC	2 cut(s)	54, 160
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	3 cut(s)	8, 186, 306
DpnII	GATC	3 cut(s)	6, 184, 304
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	271, 535
Eco147I	AGGCCT	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	271, 535
ErhI	CCWWGG	2 cut(s)	271, 535
FaeI	CATG	4 cut(s)	54, 98, 111, 317
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	2 cut(s)	128, 540
FatI	CATG	4 cut(s)	50, 94, 107, 313
FauI	CCCGC	1 cut(s)	517
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	16, 19, 444
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	16, 19, 444
FspBI	CTAG	2 cut(s)	167, 536
GluI	GCNGC	3 cut(s)	16, 19, 444
GsaI	CCCAGC	1 cut(s)	395
HaeIII	GGCC	3 cut(s)	93, 114, 342
HapII	CCGG	1 cut(s)	157
Hin1II	CATG	4 cut(s)	54, 98, 111, 317
HpaII	CCGG	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	40, 424
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	2 cut(s)	302, 458
Hpy8I	GTNNAC	2 cut(s)	40, 424
HpyCH4III	ACNGT	2 cut(s)	44, 101
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	371, 443, 464
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	54, 98, 111, 317
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	6, 184, 304
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	2 cut(s)	5, 455
LweI	GCATC	3 cut(s)	65, 159, 451
MaeI	CTAG	2 cut(s)	167, 536
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	3 cut(s)	8, 186, 306
MboI	GATC	3 cut(s)	6, 184, 304
MboII	GAAGA	3 cut(s)	140, 191, 409
MluCI	AATT	4 cut(s)	131, 243, 346, 404
MnlI	CCTC	6 cut(s)	33, 89, 156, 219, 332, 393
MseI	TTAA	2 cut(s)	242, 345
MslI	CAYNNNNRTG	2 cut(s)	99, 312
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	524
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	6, 184, 304
NlaIII	CATG	4 cut(s)	54, 98, 111, 317
NlaIV	GGNNCC	2 cut(s)	113, 207
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	342
PctI	GAATGC	1 cut(s)	445
PkrI	GCNGC	3 cut(s)	17, 20, 445
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	113, 207
PspPI	GGNCC	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	55, 161
RsaNI	GTAC	2 cut(s)	54, 160
RseI	CAYNNNNRTG	2 cut(s)	99, 312
SaqAI	TTAA	2 cut(s)	242, 345
SatI	GCNGC	3 cut(s)	16, 19, 444
Sau3AI	GATC	3 cut(s)	6, 184, 304
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	9 cut(s)	172, 211, 283, 289, 393, 423, 448, 541, 547
SfaNI	GCATC	3 cut(s)	65, 159, 451
SfuI	TTCGAA	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	99, 312
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	4 cut(s)	131, 243, 346, 404
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	15, 524
SspMI	CTAG	2 cut(s)	167, 536
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	271, 535
TaaI	ACNGT	2 cut(s)	44, 101
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	5, 248
TasI	AATT	4 cut(s)	131, 243, 346, 404
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	242, 345
Tru9I	TTAA	2 cut(s)	242, 345
TscAI	CASTG	2 cut(s)	106, 127
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	18, 443
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	106, 127
XapI	RAATTY	2 cut(s)	131, 404
XceI	RCATGY	1 cut(s)	54
XmaJI	CCTAGG	1 cut(s)	535
XspI	CTAG	2 cut(s)	167, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.