Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005618

Physical Location & Seq

Genomic Coordinates Reverse (-)

65561596 .. 65564927

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG427500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCGATCCTATGCGGCTGCCCTCTCCTTGAGTGTGTTTACTGTCTGGCATGTACTCGTTGGGCTTATAAGCGATGCCTCCACACGGCAGGCCATGACAGTGAGACATGGGGCCTTTCCAGTGCCGAAGAATTTGAGCCTGTCCCTCGCATCTGCCGGTACATTCTAGCTGTTTATGAAGATGATCTTAGGCAACCACTTTGGGAACCTCCTGGTGGGTATGGAATAAACCCAGATTGGTTAATTTCGAAACGAACATATGTAGATACCCAAGGGCAAGCTCCACCTTATATATTGTATCTTGATCATAATCATGCCGATATAGTTCTTGCCTTTAGAGGCCTTAATTTGGCCAGAGAGAGTGACTATGCAGTTTTATTGGACAATAAGCTGGGGAAGAGGAAATTTGATGGTGGATACGTTCACAACGGGCTATTGAATGCAGCTGGATGGGTTCTTGATGCAGAATGTGAAACTCTGAAAGATTTGGTGGGGAAATATCCAAAATATACTTTGACATTCGCGGGACACTCCCTAGGTTCAGGTGTAGCAGCATTGTTAACAATGCTGGTGGTGCAGAATAGGGATAGATTGGGAGACATTGAGCGAAAGAGGGTTAGGGGATATGCGATTGCACCAGCGAGGTGTATGTCATTGAACTTAGCTGTCAGATATGCAGACGTTATCAATTCTGTTGTGCTTCAGGATGACTTCTTACCACGGACAGCCACACCCTTGGAAGACATTTTCAAGTCACTTTTCTGTTTGCCGTGCCTACTATGCCTACGATGTATGCGGGACACATGTATACCTGAGGAGAAGATGCTCAAAGATCCAAGGAGGCTGTATGCACCTGGCCGCCTCTATCATATTGTTGAGAGAAAACCTTGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

298

Amino Acids

33.78

Weight (kDa)

7.86

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	9 - 75	1.5e-23	Lipase 3 N-terminal region
Lipase_3	PF01764	109 - 244	3.3e-26	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49050
fragaria_vesca	FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770
malus_domestica	MD01G1204700.v1.1 MD07G1273200.v1.1
prunus_persica	Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1
pyrus_communis	pycom01g21420 pycom07g24970 pycom07g24980
rosa_chinensis	RchiOBHm_Chr1g0377761
rosa_multiflora	Rmu_co8163758.1_g000001 Rmu_sc0021958.1_g000001 Rmu_sc0024583.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281080
rosa_rugosa	Rorug01G0404800
rosa_samantha	Rh1AG427500 Rh1CG395700
rosa_wichuraiana	Rw1G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	808
AccII	CGCG	1 cut(s)	524
AciI	CCGC	4 cut(s)	15, 524, 796, 859
AclWI	GGATC	1 cut(s)	827
AcoI	YGGCCR	2 cut(s)	351, 856
AcsI	RAATTY	2 cut(s)	131, 404
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	55, 161
AfiI	CCNNNNNNNGG	3 cut(s)	85, 215, 349
AflIII	ACRYGT	1 cut(s)	803
AgsI	TTSAA	3 cut(s)	439, 658, 751
AjnI	CCWGG	2 cut(s)	211, 853
AluBI	AGCT	5 cut(s)	170, 281, 391, 446, 665
AluI	AGCT	5 cut(s)	170, 281, 391, 446, 665
Alw26I	GTCTC	2 cut(s)	98, 591
AlwI	GGATC	1 cut(s)	827
AoxI	GGCC	5 cut(s)	91, 112, 340, 351, 856
ApeKI	GCWGC	3 cut(s)	18, 443, 551
ApoI	RAATTY	2 cut(s)	131, 404
AspA2I	CCTAGG	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	535
AxyI	CCTNAGG	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	5, 455, 563
BccI	CCATC	2 cut(s)	404, 444
BceAI	ACGGC	2 cut(s)	102, 754
BciT130I	CCWGG	2 cut(s)	213, 855
BciVI	GTATCC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	98, 591
BfaI	CTAG	2 cut(s)	167, 536
BfuAI	ACCTGC	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	5 cut(s)	16, 19, 444, 552, 859
BlnI	CCTAGG	1 cut(s)	535
BlsI	GCNGC	5 cut(s)	17, 20, 445, 553, 860
Bme1390I	CCNGG	2 cut(s)	213, 855
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	113, 207
BmrFI	CCNGG	2 cut(s)	213, 855
BmsI	GCATC	4 cut(s)	65, 159, 451, 813
BpiI	GAAGAC	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	5 cut(s)	271, 535, 719, 735, 836
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 215, 349
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	120
Bse21I	CCTNAGG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	213, 855
BseDI	CCNNGG	5 cut(s)	271, 535, 719, 735, 836
BseGI	GGATG	2 cut(s)	455, 712
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	85, 215, 349
BseMII	CTCAG	1 cut(s)	804
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	830
BseXI	GCAGC	3 cut(s)	5, 455, 563
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	5 cut(s)	93, 114, 342, 353, 858
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	3 cut(s)	128, 540, 812
BslI	CCNNNNNNNGG	3 cut(s)	85, 215, 349
BsmAI	GTCTC	2 cut(s)	98, 591
BsmFI	GGGAC	3 cut(s)	128, 540, 812
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	5 cut(s)	93, 114, 342, 353, 858
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	6, 184, 304, 832
BspACI	CCGC	4 cut(s)	15, 524, 796, 859
BspANI	GGCC	5 cut(s)	93, 114, 342, 353, 858
BspCNI	CTCAG	1 cut(s)	805
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	2 cut(s)	113, 207
BspMI	ACCTGC	1 cut(s)	882
BspPI	GGATC	1 cut(s)	827
BspT104I	TTCGAA	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	5 cut(s)	271, 535, 719, 735, 836
BssMI	GATC	4 cut(s)	6, 184, 304, 832
BssNAI	GTATAC	1 cut(s)	809
BssT1I	CCWWGG	4 cut(s)	271, 535, 735, 836
Bst1107I	GTATAC	1 cut(s)	809
Bst2UI	CCWGG	2 cut(s)	213, 855
Bst4CI	ACNGT	2 cut(s)	44, 101
Bst6I	CTCTTC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	91, 279
BstDEI	CTNAG	3 cut(s)	188, 661, 813
BstDSI	CCRYGG	1 cut(s)	719
BstF5I	GGATG	2 cut(s)	455, 712
BstFNI	CGCG	1 cut(s)	524
BstKTI	GATC	4 cut(s)	9, 187, 307, 835
BstMAI	GTCTC	2 cut(s)	98, 591
BstMBI	GATC	4 cut(s)	6, 184, 304, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 780
BstNI	CCWGG	2 cut(s)	213, 855
BstNSI	RCATGY	2 cut(s)	54, 807
BstSCI	CCNGG	2 cut(s)	211, 853
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	3 cut(s)	5, 455, 563
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	1 cut(s)	832
BstXI	CCANNNNNNTGG	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	832
BstZ17I	GTATAC	1 cut(s)	809
Bsu36I	CCTNAGG	1 cut(s)	813
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	5 cut(s)	93, 114, 342, 353, 858
BtgI	CCRYGG	1 cut(s)	719
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	455, 712
BtsIMutI	CAGTG	2 cut(s)	106, 127
BveI	ACCTGC	1 cut(s)	882
Cac8I	GCNNGC	2 cut(s)	91, 279
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	54, 160
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	5 cut(s)	51, 95, 108, 314, 804
CviQI	GTAC	2 cut(s)	54, 160
DdeI	CTNAG	3 cut(s)	188, 661, 813
DpnI	GATC	4 cut(s)	8, 186, 306, 834
DpnII	GATC	4 cut(s)	6, 184, 304, 832
EaeI	YGGCCR	2 cut(s)	351, 856
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	4 cut(s)	271, 535, 735, 836
Eco147I	AGGCCT	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	686
Eco81I	CCTNAGG	1 cut(s)	813
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	211, 853
EcoT14I	CCWWGG	4 cut(s)	271, 535, 735, 836
ErhI	CCWWGG	4 cut(s)	271, 535, 735, 836
FaeI	CATG	5 cut(s)	54, 98, 111, 317, 807
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	3 cut(s)	128, 540, 812
FatI	CATG	5 cut(s)	50, 94, 107, 313, 803
FauI	CCCGC	2 cut(s)	517, 789
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	808
Fnu4HI	GCNGC	5 cut(s)	16, 19, 444, 552, 859
FokI	GGATG	2 cut(s)	462, 719
Fsp4HI	GCNGC	5 cut(s)	16, 19, 444, 552, 859
FspBI	CTAG	2 cut(s)	167, 536
GluI	GCNGC	5 cut(s)	16, 19, 444, 552, 859
GsaI	CCCAGC	1 cut(s)	395
HaeIII	GGCC	5 cut(s)	93, 114, 342, 353, 858
HapII	CCGG	1 cut(s)	157
Hin1II	CATG	5 cut(s)	54, 98, 111, 317, 807
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HpaI	GTTAAC	1 cut(s)	561
HpaII	CCGG	1 cut(s)	157
Hpy166II	GTNNAC	4 cut(s)	40, 424, 561, 809
Hpy188I	TCNGA	2 cut(s)	480, 671
Hpy188III	TCNNGA	3 cut(s)	302, 458, 704
Hpy8I	GTNNAC	4 cut(s)	40, 424, 561, 809
HpyCH4III	ACNGT	2 cut(s)	44, 101
HpyCH4IV	ACGT	2 cut(s)	420, 681
HpyCH4V	TGCA	8 cut(s)	371, 443, 464, 577, 635, 677, 851, 891
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 780
HpyF3I	CTNAG	3 cut(s)	188, 661, 813
HpySE526I	ACGT	2 cut(s)	420, 681
Hsp92II	CATG	5 cut(s)	54, 98, 111, 317, 807
Ksp22I	TGATCA	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	6, 184, 304, 832
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	3 cut(s)	5, 455, 563
LweI	GCATC	4 cut(s)	65, 159, 451, 813
MaeI	CTAG	2 cut(s)	167, 536
MaeII	ACGT	2 cut(s)	420, 681
MaeIII	GTNAC	2 cut(s)	362, 753
MalI	GATC	4 cut(s)	8, 186, 306, 834
MboI	GATC	4 cut(s)	6, 184, 304, 832
MboII	GAAGA	5 cut(s)	140, 191, 409, 752, 832
MflI	RGATCY	1 cut(s)	832
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	5 cut(s)	131, 243, 346, 404, 688
MluNI	TGGCCA	1 cut(s)	353
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	3 cut(s)	242, 345, 560
MslI	CAYNNNNRTG	2 cut(s)	99, 312
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	213, 855
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	2 cut(s)	213, 855
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	574, 780
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	4 cut(s)	6, 184, 304, 832
NlaIII	CATG	5 cut(s)	54, 98, 111, 317, 807
NlaIV	GGNNCC	2 cut(s)	113, 207
NmuCI	GTSAC	2 cut(s)	362, 753
NspI	RCATGY	2 cut(s)	54, 807
NspV	TTCGAA	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	342
PciI	ACATGT	1 cut(s)	803
PctI	GAATGC	1 cut(s)	445
PkrI	GCNGC	5 cut(s)	17, 20, 445, 553, 860
PscI	ACATGT	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	211, 853
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	2 cut(s)	211, 853
PspN4I	GGNNCC	2 cut(s)	113, 207
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	832
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	55, 161
RsaNI	GTAC	2 cut(s)	54, 160
RseI	CAYNNNNRTG	2 cut(s)	99, 312
SaqAI	TTAA	3 cut(s)	242, 345, 560
SatI	GCNGC	5 cut(s)	16, 19, 444, 552, 859
Sau3AI	GATC	4 cut(s)	6, 184, 304, 832
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	213, 855
SfaNI	GCATC	4 cut(s)	65, 159, 451, 813
SfuI	TTCGAA	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	99, 312
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	5 cut(s)	131, 243, 346, 404, 688
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	4 cut(s)	15, 524, 796, 859
SspMI	CTAG	2 cut(s)	167, 536
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	211, 853
StyI	CCWWGG	4 cut(s)	271, 535, 735, 836
TaaI	ACNGT	2 cut(s)	44, 101
TaiI	ACGT	2 cut(s)	423, 684
TaqI	TCGA	2 cut(s)	5, 248
TasI	AATT	5 cut(s)	131, 243, 346, 404, 688
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	2 cut(s)	18, 861
Tru1I	TTAA	3 cut(s)	242, 345, 560
Tru9I	TTAA	3 cut(s)	242, 345, 560
TscAI	CASTG	2 cut(s)	106, 127
TseFI	GTSAC	2 cut(s)	362, 753
TseI	GCWGC	3 cut(s)	18, 443, 551
Tsp45I	GTSAC	2 cut(s)	362, 753
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	2 cut(s)	106, 127
XapI	RAATTY	2 cut(s)	131, 404
XceI	RCATGY	2 cut(s)	54, 807
XmaJI	CCTAGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	808
XspI	CTAG	2 cut(s)	167, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.