Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005618

Physical Location & Seq

Genomic Coordinates Forward (+)

64838994 .. 64841307

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTCGATCCTATGCGGCTGCCCTCTCCTTGAGTGTGTTTACTGTCTGGCATGTACTCGTTGGGCTTATAAGCGATGCCTCCACACGGCAGGCCATGACAGTGAGACATGGGGCCTTTCCAGTGCCGAAGAATTTGAGCCTGTCCCTCGCATCTGCCGGTACATTCTAGCTGTTTATGAAGATGATCTTAGGCAACCACTTTGGGAACCTCCTGGTGGGTATGGAATAAACCCAGATTGGTTAATTTCGAAACGAACATATGTAGATACCCAAGGGCAAGCTCCACCTTATATTAGTGACTATGCAGTTTTATTGGACAATAAGCTGGGGAAGAGGAAATTTGATGGTGGATACGTTCACAACGGGCTATTGAATGCAGCTGGATGGGTTCTTGATGCAGAATGTGAAACTCTGAAAGATTTGGTGGGGAAATATCCAAAATATACTTTGACATTCGCGGGACACTCCCTAGGTTCAGGTGTAGCAGCATTGTTAACAATGCTGGTGGTGCAGAATAGGGATAGATTGGGAGACATTGAGCGAAAGAGGGTTAGGGGATATGCGATTGCACCAGCGAGGTGTATGTCATTGAACTTAGCTGTCAGATATGCAGACGTTATCAATTCTGTTGTGCTTCAGGATGACTTCTTACCACGGACAGCCACACCCTTGGAAGACATTTTCAAGTCACTTTTCTGTTTGCCGTGCCTACTATGCCTACGATGTATGCGGGACACATGTATACCTGAGGAGAAGATGCTCAAAGATCCAAGGAGGCTGTATGCACCTGGCCGCCTCTATCATATTGTGAGAGAAAACCTTGCAGGAAGGTTTCCCCCAGTTGTCAAGACAGCAGTGCCCGTAGATGGGAGGTTTGAGCACATAGTTCTCTCTTGCAATGCCACTTCAGATCATGCCATCATTTGGATAGAGAGAGAAGCTCAAAGGGCACTAGATTTAATGTTGGAGAAAGCTCAAAGTATGGAGATTCCACCAAAGCAAAGAATGGAGCGGCAGGAGACAGTAGCGAAAGAACACACCGAGGAGTATAAGGCTGCATTACAGAGGGCTGTCACATTGGCCGTGCCTCACGCGTACTCACCATCACCATACGGAACTTTTGATGAGCGGGAAGAGGAGGAGCACTCAAGCGGGGAATCGTCTTTCGGTTCAACTAAGAAAAGCAAGACATTTGTAGAGCGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

402

Amino Acids

45.46

Weight (kDa)

6.39

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	9 - 75	2.4e-23	Lipase 3 N-terminal region
Lipase_3	PF01764	99 - 222	6.7e-24	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49050
fragaria_vesca	FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770
malus_domestica	MD01G1204700.v1.1 MD07G1273200.v1.1
prunus_persica	Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1
pyrus_communis	pycom01g21420 pycom07g24970 pycom07g24980
rosa_chinensis	RchiOBHm_Chr1g0377761
rosa_multiflora	Rmu_co8163758.1_g000001 Rmu_sc0021958.1_g000001 Rmu_sc0024583.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281080
rosa_rugosa	Rorug01G0404800
rosa_samantha	Rh1AG427500 Rh1CG395700
rosa_wichuraiana	Rw1G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AccB7I	CCANNNNNTGG	1 cut(s)	924
AccBSI	CCGCTC	3 cut(s)	1012, 1129, 1201
AccI	GTMKAC	1 cut(s)	742
AccII	CGCG	2 cut(s)	458, 1094
AciI	CCGC	8 cut(s)	15, 458, 730, 793, 1012, 1129, 1152, 1201
AclWI	GGATC	1 cut(s)	761
AcoI	YGGCCR	2 cut(s)	790, 1080
AcsI	RAATTY	2 cut(s)	131, 338
AcuI	CTGAAG	2 cut(s)	620, 891
AfaI	GTAC	3 cut(s)	55, 161, 1097
AfiI	CCNNNNNNNGG	5 cut(s)	85, 215, 866, 867, 924
AflIII	ACRYGT	2 cut(s)	737, 1092
AgsI	TTSAA	4 cut(s)	373, 592, 685, 1173
AjnI	CCWGG	2 cut(s)	211, 787
AluBI	AGCT	7 cut(s)	170, 281, 325, 380, 599, 941, 974
AluI	AGCT	7 cut(s)	170, 281, 325, 380, 599, 941, 974
Alw21I	GWGCWC	2 cut(s)	882, 1146
Alw26I	GTCTC	3 cut(s)	98, 525, 1013
AlwI	GGATC	1 cut(s)	761
AoxI	GGCC	4 cut(s)	91, 112, 790, 1080
ApeKI	GCWGC	4 cut(s)	18, 377, 485, 1055
ApoI	RAATTY	2 cut(s)	131, 338
AspA2I	CCTAGG	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	1092, 1098
AsuII	TTCGAA	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	747
BaeGI	GKGCMC	2 cut(s)	861, 952
BbsI	GAAGAC	1 cut(s)	681
Bbv12I	GWGCWC	2 cut(s)	882, 1146
BbvI	GCAGC	4 cut(s)	5, 389, 497, 1042
BccI	CCATC	5 cut(s)	338, 378, 860, 926, 1111
BceAI	ACGGC	3 cut(s)	102, 688, 1067
BciT130I	CCWGG	2 cut(s)	213, 789
BciVI	GTATCC	1 cut(s)	344
BcoDI	GTCTC	3 cut(s)	98, 525, 1013
BfaI	CTAG	3 cut(s)	167, 470, 953
BfuI	GTATCC	1 cut(s)	344
BisI	GCNGC	7 cut(s)	16, 19, 378, 486, 793, 1013, 1056
BlnI	CCTAGG	1 cut(s)	469
BlsI	GCNGC	7 cut(s)	17, 20, 379, 487, 794, 1014, 1057
Bme1390I	CCNGG	2 cut(s)	213, 789
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	113, 207
BmrFI	CCNGG	2 cut(s)	213, 789
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	4 cut(s)	65, 159, 385, 747
BmuI	ACTGGG	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	681
BplI	GAGNNNNNCTC	4 cut(s)	925, 957, 1130, 1162
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	50, 1132
BsaJI	CCNNGG	6 cut(s)	271, 469, 653, 669, 770, 1041
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 215, 866, 867, 924
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	2 cut(s)	120, 839
Bse21I	CCTNAGG	1 cut(s)	747
Bse3DI	GCAATG	1 cut(s)	904
BseBI	CCWGG	2 cut(s)	213, 789
BseDI	CCNNGG	6 cut(s)	271, 469, 653, 669, 770, 1041
BseGI	GGATG	2 cut(s)	389, 646
BseLI	CCNNNNNNNGG	5 cut(s)	85, 215, 866, 867, 924
BseMI	GCAATG	1 cut(s)	904
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	2 cut(s)	120, 839
BseRI	GAGGAG	4 cut(s)	764, 1058, 1151, 1154
BseSI	GKGCMC	2 cut(s)	861, 952
BseXI	GCAGC	4 cut(s)	5, 389, 497, 1042
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	458, 1094
BshFI	GGCC	4 cut(s)	93, 114, 792, 1082
BsiHKAI	GWGCWC	2 cut(s)	882, 1146
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	3 cut(s)	128, 474, 746
BslI	CCNNNNNNNGG	5 cut(s)	85, 215, 866, 867, 924
BsmAI	GTCTC	3 cut(s)	98, 525, 1013
BsmFI	GGGAC	3 cut(s)	128, 474, 746
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	4 cut(s)	93, 114, 792, 1082
Bsp119I	TTCGAA	1 cut(s)	248
Bsp1286I	GDGCHC	4 cut(s)	861, 882, 952, 1146
Bsp143I	GATC	4 cut(s)	6, 184, 766, 910
BspACI	CCGC	8 cut(s)	15, 458, 730, 793, 1012, 1129, 1152, 1201
BspANI	GGCC	4 cut(s)	93, 114, 792, 1082
BspCNI	CTCAG	1 cut(s)	739
BspFNI	CGCG	2 cut(s)	458, 1094
BspLI	GGNNCC	2 cut(s)	113, 207
BspPI	GGATC	1 cut(s)	761
BspT104I	TTCGAA	1 cut(s)	248
BsrBI	CCGCTC	3 cut(s)	1012, 1129, 1201
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	120, 839
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	6 cut(s)	271, 469, 653, 669, 770, 1041
BssMI	GATC	4 cut(s)	6, 184, 766, 910
BssNAI	GTATAC	1 cut(s)	743
BssT1I	CCWWGG	4 cut(s)	271, 469, 669, 770
Bst1107I	GTATAC	1 cut(s)	743
Bst2UI	CCWGG	2 cut(s)	213, 789
Bst4CI	ACNGT	3 cut(s)	44, 101, 1024
Bst6I	CTCTTC	2 cut(s)	326, 1128
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	91, 279
BstDEI	CTNAG	4 cut(s)	188, 595, 747, 1176
BstDSI	CCRYGG	1 cut(s)	653
BstF5I	GGATG	2 cut(s)	389, 646
BstFNI	CGCG	2 cut(s)	458, 1094
BstKTI	GATC	4 cut(s)	9, 187, 769, 913
BstMAI	GTCTC	3 cut(s)	98, 525, 1013
BstMBI	GATC	4 cut(s)	6, 184, 766, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	508, 714, 947
BstNI	CCWGG	2 cut(s)	213, 789
BstNSI	RCATGY	2 cut(s)	54, 741
BstSCI	CCNGG	2 cut(s)	211, 787
BstSLI	GKGCMC	2 cut(s)	861, 952
BstUI	CGCG	2 cut(s)	458, 1094
BstV1I	GCAGC	4 cut(s)	5, 389, 497, 1042
BstV2I	GAAGAC	1 cut(s)	681
BstX2I	RGATCY	1 cut(s)	766
BstXI	CCANNNNNNTGG	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	766
BstZ17I	GTATAC	1 cut(s)	743
Bsu36I	CCTNAGG	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	4 cut(s)	93, 114, 792, 1082
BtgI	CCRYGG	1 cut(s)	653
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	389, 646
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	3 cut(s)	106, 127, 861
Cac8I	GCNNGC	2 cut(s)	91, 279
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	54, 160, 1096
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	5 cut(s)	51, 95, 108, 738, 914
CviQI	GTAC	3 cut(s)	54, 160, 1096
DdeI	CTNAG	4 cut(s)	188, 595, 747, 1176
DpnI	GATC	4 cut(s)	8, 186, 768, 912
DpnII	GATC	4 cut(s)	6, 184, 766, 910
EaeI	YGGCCR	2 cut(s)	790, 1080
Eam1104I	CTCTTC	2 cut(s)	326, 1128
EarI	CTCTTC	2 cut(s)	326, 1128
Eco130I	CCWWGG	4 cut(s)	271, 469, 669, 770
Eco57I	CTGAAG	2 cut(s)	620, 891
Eco81I	CCTNAGG	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	211, 787
EcoT14I	CCWWGG	4 cut(s)	271, 469, 669, 770
ErhI	CCWWGG	4 cut(s)	271, 469, 669, 770
FaeI	CATG	5 cut(s)	54, 98, 111, 741, 917
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	3 cut(s)	128, 474, 746
FatI	CATG	5 cut(s)	50, 94, 107, 737, 913
FauI	CCCGC	4 cut(s)	451, 723, 1122, 1145
FauNDI	CATATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	7 cut(s)	16, 19, 378, 486, 793, 1013, 1056
FokI	GGATG	2 cut(s)	396, 653
Fsp4HI	GCNGC	7 cut(s)	16, 19, 378, 486, 793, 1013, 1056
FspBI	CTAG	3 cut(s)	167, 470, 953
GluI	GCNGC	7 cut(s)	16, 19, 378, 486, 793, 1013, 1056
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	4 cut(s)	93, 114, 792, 1082
HapII	CCGG	1 cut(s)	157
Hin1II	CATG	5 cut(s)	54, 98, 111, 741, 917
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	2 cut(s)	988, 1157
HpaI	GTTAAC	1 cut(s)	495
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	2 cut(s)	1092, 1098
Hpy166II	GTNNAC	4 cut(s)	40, 358, 495, 743
Hpy188I	TCNGA	3 cut(s)	414, 605, 910
Hpy188III	TCNNGA	3 cut(s)	392, 638, 847
Hpy8I	GTNNAC	4 cut(s)	40, 358, 495, 743
HpyAV	CCTTC	1 cut(s)	822
HpyCH4III	ACNGT	3 cut(s)	44, 101, 1024
HpyCH4IV	ACGT	2 cut(s)	354, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	508, 714, 947
HpyF3I	CTNAG	4 cut(s)	188, 595, 747, 1176
HpySE526I	ACGT	2 cut(s)	354, 615
Hsp92II	CATG	5 cut(s)	54, 98, 111, 741, 917
KspAI	GTTAAC	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	6, 184, 766, 910
LmnI	GCTCC	3 cut(s)	286, 1009, 1141
Lsp1109I	GCAGC	4 cut(s)	5, 389, 497, 1042
LweI	GCATC	4 cut(s)	65, 159, 385, 747
MaeI	CTAG	3 cut(s)	167, 470, 953
MaeII	ACGT	2 cut(s)	354, 615
MaeIII	GTNAC	3 cut(s)	296, 687, 1072
MalI	GATC	4 cut(s)	8, 186, 768, 912
MbiI	CCGCTC	3 cut(s)	1012, 1129, 1201
MboI	GATC	4 cut(s)	6, 184, 766, 910
MboII	GAAGA	6 cut(s)	140, 191, 343, 686, 766, 1145
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	4 cut(s)	861, 882, 952, 1146
MluCI	AATT	4 cut(s)	131, 243, 338, 622
MluI	ACGCGT	1 cut(s)	1092
MmeI	TCCRAC	1 cut(s)	945
MseI	TTAA	3 cut(s)	242, 494, 959
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	213, 789
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	213, 789
MvnI	CGCG	2 cut(s)	458, 1094
MwoI	GCNNNNNNNGC	3 cut(s)	508, 714, 947
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	4 cut(s)	6, 184, 766, 910
NlaIII	CATG	5 cut(s)	54, 98, 111, 741, 917
NlaIV	GGNNCC	2 cut(s)	113, 207
NmuCI	GTSAC	3 cut(s)	296, 687, 1072
NspI	RCATGY	2 cut(s)	54, 741
NspV	TTCGAA	1 cut(s)	248
PciI	ACATGT	1 cut(s)	737
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	988, 1157
PflMI	CCANNNNNTGG	1 cut(s)	924
PkrI	GCNGC	7 cut(s)	17, 20, 379, 487, 794, 1014, 1057
PscI	ACATGT	1 cut(s)	737
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	211, 787
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	211, 787
PspN4I	GGNNCC	2 cut(s)	113, 207
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	3 cut(s)	55, 161, 1097
RsaNI	GTAC	3 cut(s)	54, 160, 1096
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	242, 494, 959
SatI	GCNGC	7 cut(s)	16, 19, 378, 486, 793, 1013, 1056
Sau3AI	GATC	4 cut(s)	6, 184, 766, 910
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	213, 789
SduI	GDGCHC	4 cut(s)	861, 882, 952, 1146
SfaNI	GCATC	4 cut(s)	65, 159, 385, 747
SfuI	TTCGAA	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	29, 1147
SmoI	CTYRAG	2 cut(s)	29, 1147
Sse9I	AATT	4 cut(s)	131, 243, 338, 622
SsiI	CCGC	8 cut(s)	15, 458, 730, 793, 1012, 1129, 1152, 1201
SspMI	CTAG	3 cut(s)	167, 470, 953
StyD4I	CCNGG	2 cut(s)	211, 787
StyI	CCWWGG	4 cut(s)	271, 469, 669, 770
TaaI	ACNGT	3 cut(s)	44, 101, 1024
TaiI	ACGT	2 cut(s)	357, 618
TaqI	TCGA	2 cut(s)	5, 248
TasI	AATT	4 cut(s)	131, 243, 338, 622
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	3 cut(s)	18, 795, 1015
TfiI	GAWTC	2 cut(s)	988, 1157
Tru1I	TTAA	3 cut(s)	242, 494, 959
Tru9I	TTAA	3 cut(s)	242, 494, 959
TscAI	CASTG	3 cut(s)	106, 127, 861
TseFI	GTSAC	3 cut(s)	296, 687, 1072
TseI	GCWGC	4 cut(s)	18, 377, 485, 1055
Tsp45I	GTSAC	3 cut(s)	296, 687, 1072
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	2 cut(s)	670, 1128
TspRI	CASTG	3 cut(s)	106, 127, 861
Van91I	CCANNNNNTGG	1 cut(s)	924
XapI	RAATTY	2 cut(s)	131, 338
XceI	RCATGY	2 cut(s)	54, 741
XmaJI	CCTAGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	742
XspI	CTAG	3 cut(s)	167, 470, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.