Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005618

Physical Location & Seq

Genomic Coordinates Forward (+)

25458107 .. 25459691

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCATTGAACTTAGCTGTCAGATATGCAGACGTCATCAATTCTGTTGTGCTTCAGGATGACTTCTTACCGCGGACTGCTACACCCTTGGAAGACATTTTCAAGTCACTTTTCTGTTTGCCGTGCATATTGTGCCTACGATGCATGAGGGACACATGTATACCTGAGGAGAAGATGCTCAAAGATCCAAGGAGGCTCTATGCACCTGGCCGCCTTTATCACATTGTTGAGAGAAAGCCTTTTAGGTGTGGAAGATTTCCCCCCGTTGTCAAGACAGCAGTTCCGGTGGATGGGAGATTTGAGCACATCGTTCTTTCTTGTAATGCCACTTCCGACCACGCCATCATTTGGATAGAGAGAGAAGCCCAAAGGGCTCTGGATTTAATGTTGCAGAAAGATCATATTATGGAGATTCCGTCGAAGCAAAGAATGGAGCGGCAGGAGACATTAGCCAAAGAACACACAGAAGAGTACAAGGCTGCATTACAGAGGGCTGTCACATTGGCCGTGCCTCATGCATATTCACCATCGCCGTACGGAACTTTTGACGAGAAGGACGAGGAAGATCAATCGTATGGATCAAGCGGGGAATCTTCGTTTGGTTCGACTAAGAAAAGCAAGTCCTTCGCAGCGCGGTTTTTCGAGAGAAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

219

Amino Acids

25.05

Weight (kDa)

7.0

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49050
fragaria_vesca	FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770 FvH4_7g29770
malus_domestica	MD01G1204700.v1.1 MD07G1273200.v1.1
prunus_persica	Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1 Prupe.2G296900_v2.0.a1
pyrus_communis	pycom01g21420 pycom07g24970 pycom07g24980
rosa_chinensis	RchiOBHm_Chr1g0377761
rosa_multiflora	Rmu_co8163758.1_g000001 Rmu_sc0021958.1_g000001 Rmu_sc0024583.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281080
rosa_rugosa	Rorug01G0404800
rosa_samantha	Rh1AG427500 Rh1CG395700
rosa_wichuraiana	Rw1G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	2 cut(s)	73, 634
AciI	CCGC	6 cut(s)	71, 73, 211, 436, 585, 634
AclWI	GGATC	2 cut(s)	179, 586
AcoI	YGGCCR	2 cut(s)	208, 504
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	473, 536
AfiI	CCNNNNNNNGG	2 cut(s)	290, 348
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	10, 103
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	179, 586
AoxI	GGCC	2 cut(s)	208, 504
ApeKI	GCWGC	2 cut(s)	479, 629
AspLEI	GCGC	1 cut(s)	634
AsuHPI	GGTGA	1 cut(s)	516
AxyI	CCTNAGG	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	376
BarI	GAAGNNNNNNTAC	2 cut(s)	313, 345
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	466, 641
BccI	CCATC	3 cut(s)	284, 350, 535
BceAI	ACGGC	3 cut(s)	106, 491, 517
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	437
BglI	GCCNNNNNGGC	1 cut(s)	371
BisI	GCNGC	4 cut(s)	211, 437, 480, 630
BlsI	GCNGC	4 cut(s)	212, 438, 481, 631
Bme1390I	CCNGG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	131, 165
BpiI	GAAGAC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	71, 87, 188
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 348
Bse21I	CCTNAGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	71, 87, 188
BseGI	GGATG	2 cut(s)	64, 295
BseLI	CCNNNNNNNGG	2 cut(s)	290, 348
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	466, 641
Bsh1236I	CGCG	2 cut(s)	73, 634
BshFI	GGCC	2 cut(s)	210, 506
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	284
BsiWI	CGTACG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	290, 348
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	210, 506
Bsp1286I	GDGCHC	2 cut(s)	306, 376
Bsp143I	GATC	4 cut(s)	184, 397, 565, 578
BspACI	CCGC	6 cut(s)	71, 73, 211, 436, 585, 634
BspANI	GGCC	2 cut(s)	210, 506
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	2 cut(s)	73, 634
BspPI	GGATC	2 cut(s)	179, 586
BsrBI	CCGCTC	1 cut(s)	436
BssECI	CCNNGG	3 cut(s)	71, 87, 188
BssMI	GATC	4 cut(s)	184, 397, 565, 578
BssNAI	GTATAC	1 cut(s)	161
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	87, 188
Bst1107I	GTATAC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	13, 165, 609
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	64, 295
BstFNI	CGCG	2 cut(s)	73, 634
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	4 cut(s)	187, 400, 568, 581
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	4 cut(s)	184, 397, 565, 578
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 141, 371
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	2 cut(s)	73, 634
BstV1I	GCAGC	2 cut(s)	466, 641
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BstZ17I	GTATAC	1 cut(s)	161
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	210, 506
BtgI	CCRYGG	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	64, 295
CfoI	GCGC	1 cut(s)	634
Cfr42I	CCGCGG	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	472, 535
CviAII	CATG	3 cut(s)	145, 156, 515
CviQI	GTAC	2 cut(s)	472, 535
DdeI	CTNAG	3 cut(s)	13, 165, 609
DpnI	GATC	4 cut(s)	186, 399, 567, 580
DpnII	GATC	4 cut(s)	184, 397, 565, 578
EaeI	YGGCCR	2 cut(s)	208, 504
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	87, 188
Eco24I	GRGCYC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	87, 188
EcoT22I	ATGCAT	2 cut(s)	146, 520
EcoT38I	GRGCYC	1 cut(s)	376
ErhI	CCWWGG	2 cut(s)	87, 188
FaeI	CATG	3 cut(s)	148, 159, 518
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	144, 155, 514
FauI	CCCGC	1 cut(s)	578
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	4 cut(s)	211, 437, 480, 630
FokI	GGATG	2 cut(s)	71, 302
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	4 cut(s)	211, 437, 480, 630
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	4 cut(s)	211, 437, 480, 630
HaeIII	GGCC	2 cut(s)	210, 506
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	634
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	148, 159, 518
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HinfI	GANTC	2 cut(s)	412, 590
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	516
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	23, 334
Hpy188III	TCNNGA	4 cut(s)	56, 271, 377, 643
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	547, 634
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	7 cut(s)	29, 126, 144, 203, 391, 482, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 141, 371
HpyF3I	CTNAG	3 cut(s)	13, 165, 609
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	148, 159, 518
HspAI	GCGC	1 cut(s)	632
KspI	CCGCGG	1 cut(s)	74
Kzo9I	GATC	4 cut(s)	184, 397, 565, 578
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	7 cut(s)	41, 177, 192, 219, 297, 362, 425
Lsp1109I	GCAGC	2 cut(s)	466, 641
LweI	GCATC	2 cut(s)	131, 165
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	105, 496
MalI	GATC	4 cut(s)	186, 399, 567, 580
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	4 cut(s)	184, 397, 565, 578
MboII	GAAGA	6 cut(s)	104, 184, 264, 479, 575, 585
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	306, 376
MluCI	AATT	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	6 cut(s)	141, 160, 186, 483, 522, 553
Mph1103I	ATGCAT	2 cut(s)	146, 520
MseI	TTAA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	2 cut(s)	73, 634
MwoI	GCNNNNNNNGC	3 cut(s)	132, 141, 371
NdeII	GATC	4 cut(s)	184, 397, 565, 578
NlaIII	CATG	3 cut(s)	148, 159, 518
NmuCI	GTSAC	2 cut(s)	105, 496
NsiI	ATGCAT	2 cut(s)	146, 520
NspI	RCATGY	1 cut(s)	159
PciI	ACATGT	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	555, 602
PfeI	GAWTC	2 cut(s)	412, 590
Pfl23II	CGTACG	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	4 cut(s)	212, 438, 481, 631
PscI	ACATGT	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspLI	CGTACG	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	473, 536
RsaNI	GTAC	2 cut(s)	472, 535
SacII	CCGCGG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	4 cut(s)	211, 437, 480, 630
Sau3AI	GATC	4 cut(s)	184, 397, 565, 578
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	306, 376
SetI	ASST	5 cut(s)	19, 36, 166, 208, 248
SfaNI	GCATC	2 cut(s)	131, 165
Sfr303I	CCGCGG	1 cut(s)	74
SgrBI	CCGCGG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	6 cut(s)	71, 73, 211, 436, 585, 634
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	87, 188
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	419, 605, 642
TasI	AATT	1 cut(s)	40
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	2 cut(s)	213, 439
TfiI	GAWTC	2 cut(s)	412, 590
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseFI	GTSAC	2 cut(s)	105, 496
TseI	GCWGC	2 cut(s)	479, 629
Tsp45I	GTSAC	2 cut(s)	105, 496
TspGWI	ACGGA	2 cut(s)	405, 552
Van91I	CCANNNNNTGG	1 cut(s)	348
XceI	RCATGY	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	160
ZraI	GACGTC	1 cut(s)	34
Zsp2I	ATGCAT	2 cut(s)	146, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.