MD07G1273200.v1.1

Lipase 3 N-terminal region

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
33922972 .. 33925856
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1273200.v1.1.491

Sequence Viewer

Length: 1293 bp
ATGTCAATCCTATGTGCGTGTCCTGTCCTTGAGTGTGTTTATTGTCTGGCATGTACCCGCTGGGCGTGGAAGCGATGCCTCCACACAGCGGGTCATGACAGTGAGACTTGGGGCCTTTCCACTGCTGAAGAATTTGAGCCTGTTCCTCGCCTTTGCCGCTACATTCTAGCAGTTTACGAAGATGACCTTCGATGCCCTCTTTGGGAACCACCCGGTGGGTATGGAATTAACCCAGATTGGTTAATCTTGAAAAAGACTTATGAAGATACCGGAGGTCTAGCTCCTCCTTATATATTGTATCTTGATCACAATCATGCCGATATAGTTCTTGCCTTCAGAGGCCTTAACTTGGCAAGAGAGAGTGACTATGCAGTTCTGATGGATAATAAGCTCGGCCAGAGGAAATTTGATGGCGGGTATGTTCACAACGGGCTATTGAAATCTGCTCAATGGGTTATGGATGCAGAATGTGAAATTTTGAAAGATCTGGTGCAGAATTATCCAAATTATACTTTGACTTTCGCGGGACACTCCCTAGGGTCAGGTGTAGCAGCATTGTTAACAATGGTGGTAGTGAAGAACAGGGATAGGTTGGGGGACATTGATCGGAAGAGGGTTAGGGGCTATGCTATTGCACCGGCAAGGTGTATGTCATTGAACCTAGCTGTCAGATATGCAGACGTCATCAATTCTGTTGTGCTTCAGGATGACTTCTTACCGCGGACTGCTACACCCTTGGAAGACATTTTCAAGTCACTTTTCTGTTTGCCTTGCATATTGTGCCTACGATGCATGAGGGACACATGTATACCTGAGGAGAAGATGCTCAAAGATCCAAGGAGGCTCTATGCACCTGGCCGCCTTTATCACATTGTTGAGAGAAAGCCTTTTAGGTGTGGAAGATTTCCCCCCGTTGTCAAGACAGCAGTTCCCGTGGACGGGAGATTTGAGCACATCGTTCTTTCTTGTAATGCCACTTCTGACCACGCCATCATTTGGATAGAGAGAGAAGCCCAAAGGGCTCTGGATTTAATGTTGCAGAAAGATCATATTATGGAGATTCCGTCGAAGCAAAGAATGGAGCGGCAGGAGACATTAGCCAAAGAACACACAGAAGAGTACAAGGCTGCATTACAGAGGGCTGTCACATTGGCCGTGCCTCATGCATATTCACCGTCTCCGTACGGAACTTTTGACGAGAAGGACGAGGAAGATCACTCATATGGATCAAGCGGGGAATCTTCGTTTGGATCGACTAAGAAAAGCAAGTCCTTCACAGCGCGGTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

48.85

Weight (kDa)

6.51

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 10 - 75 7.6e-25 Lipase 3 N-terminal region
Lipase_3 PF01764 109 - 244 2.5e-26 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 684
AccB7I CCANNNNNTGG 2 cut(s) 215, 996
AccBSI CCGCTC 1 cut(s) 1084
AccI GTMKAC 1 cut(s) 808
AccII CGCG 3 cut(s) 524, 721, 1282
AclWI GGATC 3 cut(s) 827, 1234, 1258
AcoI YGGCCR 3 cut(s) 394, 856, 1152
AcsI RAATTY 3 cut(s) 131, 404, 474
AcuI CTGAAG 3 cut(s) 147, 319, 686
AcyI GRCGYC 1 cut(s) 681
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 3 cut(s) 55, 1121, 1184
AfiI CCNNNNNNNGG 7 cut(s) 88, 202, 215, 349, 938, 939, 996
AflIII ACRYGT 1 cut(s) 803
AgsI TTSAA 5 cut(s) 250, 439, 481, 658, 751
AjnI CCWGG 1 cut(s) 853
AjuI GAANNNNNNNTTGG 2 cut(s) 1230, 1262
AluBI AGCT 3 cut(s) 281, 391, 665
AluI AGCT 3 cut(s) 281, 391, 665
Alw21I GWGCWC 1 cut(s) 954
Alw26I GTCTC 3 cut(s) 98, 1085, 1182
AlwI GGATC 3 cut(s) 827, 1234, 1258
AoxI GGCC 5 cut(s) 112, 340, 394, 856, 1152
ApeKI GCWGC 2 cut(s) 551, 1127
ApoI RAATTY 3 cut(s) 131, 404, 474
ArsI GACNNNNNNTTYG 2 cut(s) 929, 961
AspA2I CCTAGG 1 cut(s) 535
AspLEI GCGC 1 cut(s) 1282
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 1164
AvrII CCTAGG 1 cut(s) 535
AxyI CCTNAGG 1 cut(s) 813
BanII GRGCYC 1 cut(s) 1024
BarI GAAGNNNNNNTAC 2 cut(s) 961, 993
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 954
BbvI GCAGC 2 cut(s) 563, 1114
BccI CCATC 3 cut(s) 373, 404, 998
BceAI ACGGC 1 cut(s) 1139
BciT130I CCWGG 1 cut(s) 855
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 3 cut(s) 98, 1085, 1182
BfaI CTAG 5 cut(s) 167, 278, 536, 662, 1291
BglI GCCNNNNNGGC 1 cut(s) 1019
BglII AGATCT 1 cut(s) 484
BisI GCNGC 5 cut(s) 157, 552, 859, 1085, 1128
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 5 cut(s) 158, 553, 860, 1086, 1129
Bme1390I CCNGG 2 cut(s) 213, 855
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 113, 207
BmrFI CCNGG 2 cut(s) 213, 855
BmsI GCATC 5 cut(s) 65, 182, 451, 779, 813
BpiI GAAGAC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 681
BsaJI CCNNGG 5 cut(s) 535, 719, 735, 836, 933
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 7 cut(s) 88, 202, 215, 349, 938, 939, 996
Bse118I RCCGGY 1 cut(s) 637
Bse21I CCTNAGG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 5 cut(s) 535, 719, 735, 836, 933
BseGI GGATG 2 cut(s) 466, 712
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 7 cut(s) 88, 202, 215, 349, 938, 939, 996
BseMII CTCAG 1 cut(s) 804
BseRI GAGGAG 2 cut(s) 273, 830
BseXI GCAGC 2 cut(s) 563, 1114
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 3 cut(s) 524, 721, 1282
BshFI GGCC 5 cut(s) 114, 342, 396, 858, 1154
BsiHKAI GWGCWC 1 cut(s) 954
BsiSI CCGG 3 cut(s) 213, 270, 638
BsiWI CGTACG 1 cut(s) 1182
BslFI GGGAC 3 cut(s) 540, 611, 812
BslI CCNNNNNNNGG 7 cut(s) 88, 202, 215, 349, 938, 939, 996
BsmAI GTCTC 3 cut(s) 98, 1085, 1182
BsmBI CGTCTC 1 cut(s) 1182
BsmFI GGGAC 3 cut(s) 540, 611, 812
BsnI GGCC 5 cut(s) 114, 342, 396, 858, 1154
Bsp1286I GDGCHC 2 cut(s) 954, 1024
Bsp143I GATC 8 cut(s) 304, 484, 604, 832, 1045, 1213, 1226, 1250
BspANI GGCC 5 cut(s) 114, 342, 396, 858, 1154
BspCNI CTCAG 1 cut(s) 805
BspFNI CGCG 3 cut(s) 524, 721, 1282
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 113, 207
BspPI GGATC 3 cut(s) 827, 1234, 1258
BsrBI CCGCTC 1 cut(s) 1084
BsrFI RCCGGY 1 cut(s) 637
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 5 cut(s) 535, 719, 735, 836, 933
BssMI GATC 8 cut(s) 304, 484, 604, 832, 1045, 1213, 1226, 1250
BssNAI GTATAC 1 cut(s) 809
BssNI GRCGYC 1 cut(s) 681
BssT1I CCWWGG 3 cut(s) 535, 735, 836
Bst1107I GTATAC 1 cut(s) 809
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 2 cut(s) 101, 1176
Bst6I CTCTTC 2 cut(s) 605, 1110
BstACI GRCGYC 1 cut(s) 681
BstAPI GCANNNNNTGC 1 cut(s) 780
BstDEI CTNAG 2 cut(s) 813, 1257
BstDSI CCRYGG 2 cut(s) 719, 933
BstF5I GGATG 2 cut(s) 466, 712
BstFNI CGCG 3 cut(s) 524, 721, 1282
BstHHI GCGC 1 cut(s) 1282
BstKTI GATC 8 cut(s) 307, 487, 607, 835, 1048, 1216, 1229, 1253
BstMAI GTCTC 3 cut(s) 98, 1085, 1182
BstMBI GATC 8 cut(s) 304, 484, 604, 832, 1045, 1213, 1226, 1250
BstMWI GCNNNNNNNGC 4 cut(s) 156, 780, 789, 1019
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 54, 807
BstSCI CCNGG 2 cut(s) 211, 853
BstUI CGCG 3 cut(s) 524, 721, 1282
BstV1I GCAGC 2 cut(s) 563, 1114
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 2 cut(s) 484, 832
BstYI RGATCY 2 cut(s) 484, 832
BstZ17I GTATAC 1 cut(s) 809
Bsu36I CCTNAGG 1 cut(s) 813
BsuRI GGCC 5 cut(s) 114, 342, 396, 858, 1154
BtgI CCRYGG 2 cut(s) 719, 933
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 466, 712
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 106, 120
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 1282
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 112
Cfr42I CCGCGG 1 cut(s) 722
Csp6I GTAC 3 cut(s) 54, 1120, 1183
CviAII CATG 6 cut(s) 51, 95, 314, 793, 804, 1163
CviQI GTAC 3 cut(s) 54, 1120, 1183
DdeI CTNAG 2 cut(s) 813, 1257
DpnI GATC 8 cut(s) 306, 486, 606, 834, 1047, 1215, 1228, 1252
DpnII GATC 8 cut(s) 304, 484, 604, 832, 1045, 1213, 1226, 1250
DraIII CACNNNGTG 1 cut(s) 215
EaeI YGGCCR 3 cut(s) 394, 856, 1152
Eam1104I CTCTTC 2 cut(s) 605, 1110
EarI CTCTTC 2 cut(s) 605, 1110
Eco130I CCWWGG 3 cut(s) 535, 735, 836
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 1024
Eco57I CTGAAG 3 cut(s) 147, 319, 686
Eco81I CCTNAGG 1 cut(s) 813
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 853
EcoT14I CCWWGG 3 cut(s) 535, 735, 836
EcoT22I ATGCAT 2 cut(s) 794, 1168
EcoT38I GRGCYC 1 cut(s) 1024
ErhI CCWWGG 3 cut(s) 535, 735, 836
Esp3I CGTCTC 1 cut(s) 1182
FaeI CATG 6 cut(s) 54, 98, 317, 796, 807, 1166
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 3 cut(s) 540, 611, 812
FatI CATG 6 cut(s) 50, 94, 313, 792, 803, 1162
FauI CCCGC 5 cut(s) 65, 82, 407, 517, 1226
FauNDI CATATG 1 cut(s) 1222
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 157, 552, 859, 1085, 1128
FokI GGATG 2 cut(s) 473, 719
FriOI GRGCYC 1 cut(s) 1024
Fsp4HI GCNGC 5 cut(s) 157, 552, 859, 1085, 1128
FspBI CTAG 5 cut(s) 167, 278, 536, 662, 1291
GlaI GCGC 1 cut(s) 1281
GluI GCNGC 5 cut(s) 157, 552, 859, 1085, 1128
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 5 cut(s) 114, 342, 396, 858, 1154
HapII CCGG 3 cut(s) 213, 270, 638
HhaI GCGC 1 cut(s) 1282
Hin1I GRCGYC 1 cut(s) 681
Hin1II CATG 6 cut(s) 54, 98, 317, 796, 807, 1166
Hin6I GCGC 1 cut(s) 1280
HinP1I GCGC 1 cut(s) 1280
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 2 cut(s) 1060, 1238
HpaI GTTAAC 1 cut(s) 561
HpaII CCGG 3 cut(s) 213, 270, 638
HphI GGTGA 1 cut(s) 1164
Hpy166II GTNNAC 5 cut(s) 175, 424, 561, 809, 937
Hpy188I TCNGA 5 cut(s) 338, 378, 609, 671, 982
Hpy188III TCNNGA 6 cut(s) 95, 247, 302, 704, 919, 1025
Hpy8I GTNNAC 5 cut(s) 175, 424, 561, 809, 937
Hpy99I CGWCG 1 cut(s) 1069
HpyAV CCTTC 4 cut(s) 197, 343, 1195, 1282
HpyCH4III ACNGT 2 cut(s) 101, 1176
HpyCH4IV ACGT 1 cut(s) 681
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 780, 789, 1019
HpyF3I CTNAG 2 cut(s) 813, 1257
HpySE526I ACGT 1 cut(s) 681
Hsp92I GRCGYC 1 cut(s) 681
Hsp92II CATG 6 cut(s) 54, 98, 317, 796, 807, 1166
HspAI GCGC 1 cut(s) 1280
Ksp22I TGATCA 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 561
KspI CCGCGG 1 cut(s) 722
Kzo9I GATC 8 cut(s) 304, 484, 604, 832, 1045, 1213, 1226, 1250
LmnI GCTCC 2 cut(s) 286, 1081
Lsp1109I GCAGC 2 cut(s) 563, 1114
LweI GCATC 5 cut(s) 65, 182, 451, 779, 813
MaeI CTAG 5 cut(s) 167, 278, 536, 662, 1291
MaeII ACGT 1 cut(s) 681
MaeIII GTNAC 3 cut(s) 362, 753, 1144
MalI GATC 8 cut(s) 306, 486, 606, 834, 1047, 1215, 1228, 1252
MbiI CCGCTC 1 cut(s) 1084
MboI GATC 8 cut(s) 304, 484, 604, 832, 1045, 1213, 1226, 1250
MflI RGATCY 2 cut(s) 484, 832
MhlI GDGCHC 2 cut(s) 954, 1024
MluCI AATT 7 cut(s) 131, 225, 404, 474, 496, 505, 688
Mph1103I ATGCAT 2 cut(s) 794, 1168
MseI TTAA 5 cut(s) 228, 242, 345, 560, 1031
MslI CAYNNNNRTG 3 cut(s) 99, 312, 1221
MspA1I CMGCKG 3 cut(s) 60, 89, 721
MspI CCGG 3 cut(s) 213, 270, 638
MspR9I CCNGG 2 cut(s) 213, 855
MvaI CCWGG 1 cut(s) 855
MvnI CGCG 3 cut(s) 524, 721, 1282
MwoI GCNNNNNNNGC 4 cut(s) 156, 780, 789, 1019
NciI CCSGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 1222
NdeII GATC 8 cut(s) 304, 484, 604, 832, 1045, 1213, 1226, 1250
NlaIII CATG 6 cut(s) 54, 98, 317, 796, 807, 1166
NlaIV GGNNCC 2 cut(s) 113, 207
NmeAIII GCCGAG 1 cut(s) 372
NmuCI GTSAC 3 cut(s) 362, 753, 1144
NsiI ATGCAT 2 cut(s) 794, 1168
NspI RCATGY 2 cut(s) 54, 807
PagI TCATGA 1 cut(s) 94
PceI AGGCCT 1 cut(s) 342
PciI ACATGT 1 cut(s) 803
PcsI WCGNNNNNNNCGW 2 cut(s) 1203, 1250
PfeI GAWTC 2 cut(s) 1060, 1238
Pfl23II CGTACG 1 cut(s) 1182
PflMI CCANNNNNTGG 2 cut(s) 215, 996
PkrI GCNGC 5 cut(s) 158, 553, 860, 1086, 1129
PscI ACATGT 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 853
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 1 cut(s) 853
PspLI CGTACG 1 cut(s) 1182
PspN4I GGNNCC 2 cut(s) 113, 207
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 2 cut(s) 484, 832
RsaI GTAC 3 cut(s) 55, 1121, 1184
RsaNI GTAC 3 cut(s) 54, 1120, 1183
RseI CAYNNNNRTG 3 cut(s) 99, 312, 1221
SacII CCGCGG 1 cut(s) 722
SaqAI TTAA 5 cut(s) 228, 242, 345, 560, 1031
SatI GCNGC 5 cut(s) 157, 552, 859, 1085, 1128
Sau3AI GATC 8 cut(s) 304, 484, 604, 832, 1045, 1213, 1226, 1250
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 213, 855
SduI GDGCHC 2 cut(s) 954, 1024
SfaNI GCATC 5 cut(s) 65, 182, 451, 779, 813
Sfr303I CCGCGG 1 cut(s) 722
SgrBI CCGCGG 1 cut(s) 722
SmiMI CAYNNNNRTG 3 cut(s) 99, 312, 1221
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 7 cut(s) 131, 225, 404, 474, 496, 505, 688
SseBI AGGCCT 1 cut(s) 342
SspMI CTAG 5 cut(s) 167, 278, 536, 662, 1291
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 211, 853
StyI CCWWGG 3 cut(s) 535, 735, 836
TaaI ACNGT 2 cut(s) 101, 1176
TaiI ACGT 1 cut(s) 684
TaqI TCGA 3 cut(s) 190, 1067, 1253
TasI AATT 7 cut(s) 131, 225, 404, 474, 496, 505, 688
TatI WGTACW 1 cut(s) 1119
TauI GCSGC 3 cut(s) 159, 861, 1087
TfiI GAWTC 2 cut(s) 1060, 1238
Tru1I TTAA 5 cut(s) 228, 242, 345, 560, 1031
Tru9I TTAA 5 cut(s) 228, 242, 345, 560, 1031
TscAI CASTG 2 cut(s) 106, 127
TseFI GTSAC 3 cut(s) 362, 753, 1144
TseI GCWGC 2 cut(s) 551, 1127
Tsp45I GTSAC 3 cut(s) 362, 753, 1144
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 3 cut(s) 1053, 1170, 1200
TspRI CASTG 2 cut(s) 106, 127
Van91I CCANNNNNTGG 2 cut(s) 215, 996
XapI RAATTY 3 cut(s) 131, 404, 474
XceI RCATGY 2 cut(s) 54, 807
XmaJI CCTAGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 808
XspI CTAG 5 cut(s) 167, 278, 536, 662, 1291
ZraI GACGTC 1 cut(s) 682
Zsp2I ATGCAT 2 cut(s) 794, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.