FvH4_7g30961

Protein timeless homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015696
Physical Location & Seq
Forward (+)
22451361 .. 22454322
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30961.t1

Sequence Viewer

Length: 612 bp
ATGGAGTTGTCTAGAATGGATGAAATAATTGATACCCTTGCAGTAGAGCATTCTTATAGAACTGCAAATCAATTCAAGAGCCCTGCAACTTGTTCTGGATTTGCTCATCAGCCTGCTGCTTCAGTTGATTTGAAAGATTTGATCAACTTGTTGAGGCGCGACGTTTTGCAGACTGGGGATGTTTTAAAGGAAGTTTTCAAGTGGGATACTGTATTTAAGGATTTAGTACCTATTATTGAGCAGTACCAGGAGGAGCGCAGCTTGTCAATTAGTCAGGCCACTGTTAAGGAACACCACTCGATCCAGAAGAGTCGTGTCATCTTATTTCAGATCGCGGAGTTTGTTAATTCTTTCCAGTATCATAGGCATTCAAGTTCTAAGGGAACCACAAATTTTGGATGTTTATATGATGGTGGAGTAATGTTGAGCACGGACGGTAGATCTTTTCATATGGATGGAGTTACCATAGAGCCACCAGAAGACCACCCTTGGTTCCTAAACTTTCATGGATTGAAGTTGCAATACAATTCTGAAGATGTATGGATTTACGTGTCATTCAGTTTGCCGGAGGCGATTGAGGAGATCGAGTTTCTAGAAGCAGAAGAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIMELESS TIMELESS_C

Protein Analysis

204

Amino Acids

23.32

Weight (kDa)

4.89

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 159, 335
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 2 cut(s) 105, 552
AfaI GTAC 2 cut(s) 228, 245
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 5 cut(s) 76, 133, 199, 372, 514
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw21I GWGCWC 1 cut(s) 431
AlwI GGATC 1 cut(s) 295
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 2 cut(s) 116, 258
ApoI RAATTY 1 cut(s) 391
AspLEI GCGC 2 cut(s) 159, 258
BanII GRGCYC 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 506, 538
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 103, 270
BccI CCATC 2 cut(s) 404, 449
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 199
BclI TGATCA 1 cut(s) 141
BfaI CTAG 3 cut(s) 12, 593, 610
BfuI GTATCC 1 cut(s) 199
BglII AGATCT 1 cut(s) 440
BisI GCNGC 2 cut(s) 117, 259
BlsI GCNGC 2 cut(s) 118, 260
Bme1390I CCNGG 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 385, 494
BmrFI CCNGG 1 cut(s) 248
BmrI ACTGGG 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bse1I ACTGG 2 cut(s) 178, 355
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 4 cut(s) 25, 184, 404, 460
BseNI ACTGG 2 cut(s) 178, 355
BseRI GAGGAG 2 cut(s) 266, 593
BseXI GCAGC 2 cut(s) 103, 270
Bsh1236I CGCG 2 cut(s) 159, 335
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 566
BsmI GAATGC 2 cut(s) 49, 367
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 83, 431
Bsp143I GATC 5 cut(s) 141, 300, 330, 440, 582
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 278
BspFNI CGCG 2 cut(s) 159, 335
BspLI GGNNCC 2 cut(s) 385, 494
BspPI GGATC 1 cut(s) 295
BsrI ACTGG 2 cut(s) 178, 355
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 5 cut(s) 141, 300, 330, 440, 582
BssT1I CCWWGG 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 211, 283, 437
Bst6I CTCTTC 2 cut(s) 302, 597
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 4 cut(s) 25, 184, 404, 460
BstFNI CGCG 2 cut(s) 159, 335
BstHHI GCGC 2 cut(s) 159, 258
BstKTI GATC 5 cut(s) 144, 303, 333, 443, 585
BstMBI GATC 5 cut(s) 141, 300, 330, 440, 582
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstUI CGCG 2 cut(s) 159, 335
BstV1I GCAGC 2 cut(s) 103, 270
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 4 cut(s) 25, 184, 404, 460
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 2 cut(s) 159, 258
Csp6I GTAC 2 cut(s) 227, 244
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 1 cut(s) 506
CviJI RGCY 5 cut(s) 81, 112, 261, 278, 472
CviKI_1 RGCY 5 cut(s) 81, 112, 261, 278, 472
CviQI GTAC 2 cut(s) 227, 244
DdeI CTNAG 1 cut(s) 378
DpnI GATC 5 cut(s) 143, 302, 332, 442, 584
DpnII GATC 5 cut(s) 141, 300, 330, 440, 582
DraI TTTAAA 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 302, 597
EarI CTCTTC 2 cut(s) 302, 597
Eco130I CCWWGG 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 83
Eco57I CTGAAG 2 cut(s) 105, 552
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 488
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 1 cut(s) 509
FaiI YATR 9 cut(s) 57, 363, 406, 408, 450, 452, 467, 507, 541
FatI CATG 1 cut(s) 505
FauNDI CATATG 1 cut(s) 450
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 117, 259
FokI GGATG 4 cut(s) 32, 191, 411, 467
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 117, 259
FspBI CTAG 3 cut(s) 12, 593, 610
GlaI GCGC 2 cut(s) 158, 257
GluI GCNGC 2 cut(s) 117, 259
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 566
HhaI GCGC 2 cut(s) 159, 258
Hin1II CATG 1 cut(s) 509
Hin6I GCGC 2 cut(s) 157, 256
HinP1I GCGC 2 cut(s) 157, 256
HinfI GANTC 1 cut(s) 310
HpaII CCGG 1 cut(s) 566
Hpy188I TCNGA 2 cut(s) 330, 532
Hpy188III TCNNGA 5 cut(s) 12, 76, 96, 304, 593
Hpy99I CGWCG 1 cut(s) 164
HpyCH4III ACNGT 3 cut(s) 211, 283, 437
HpyCH4IV ACGT 2 cut(s) 162, 549
HpyCH4V TGCA 5 cut(s) 41, 65, 86, 169, 520
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 2 cut(s) 162, 549
Hsp92II CATG 1 cut(s) 509
HspAI GCGC 2 cut(s) 157, 256
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 5 cut(s) 141, 300, 330, 440, 582
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 2 cut(s) 103, 270
MaeI CTAG 3 cut(s) 12, 593, 610
MaeII ACGT 2 cut(s) 162, 549
MaeIII GTNAC 1 cut(s) 460
MalI GATC 5 cut(s) 143, 302, 332, 442, 584
MboI GATC 5 cut(s) 141, 300, 330, 440, 582
MboII GAAGA 3 cut(s) 319, 491, 545
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 2 cut(s) 83, 431
MluCI AATT 6 cut(s) 27, 71, 267, 346, 391, 526
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 5 cut(s) 147, 244, 562, 571, 598
MseI TTAA 4 cut(s) 185, 216, 285, 345
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 2 cut(s) 49, 367
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 2 cut(s) 159, 335
NdeI CATATG 1 cut(s) 450
NdeII GATC 5 cut(s) 141, 300, 330, 440, 582
NlaIII CATG 1 cut(s) 509
NlaIV GGNNCC 2 cut(s) 385, 494
PctI GAATGC 2 cut(s) 49, 367
PkrI GCNGC 2 cut(s) 118, 260
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Ppu21I YACGTR 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 385, 494
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 2 cut(s) 228, 245
RsaNI GTAC 2 cut(s) 227, 244
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 4 cut(s) 185, 216, 285, 345
SatI GCNGC 2 cut(s) 117, 259
Sau3AI GATC 5 cut(s) 141, 300, 330, 440, 582
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 2 cut(s) 83, 431
SetI ASST 5 cut(s) 165, 232, 263, 552, 609
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 6 cut(s) 27, 71, 267, 346, 391, 526
SsiI CCGC 1 cut(s) 335
SspMI CTAG 3 cut(s) 12, 593, 610
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 3 cut(s) 211, 283, 437
TaiI ACGT 2 cut(s) 165, 552
TaqI TCGA 2 cut(s) 299, 585
TasI AATT 6 cut(s) 27, 71, 267, 346, 391, 526
Tru1I TTAA 4 cut(s) 185, 216, 285, 345
Tru9I TTAA 4 cut(s) 185, 216, 285, 345
TscAI CASTG 1 cut(s) 286
TseI GCWGC 2 cut(s) 116, 258
TspDTI ATGAA 3 cut(s) 36, 437, 494
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 1 cut(s) 286
XapI RAATTY 1 cut(s) 391
XbaI TCTAGA 2 cut(s) 11, 592
XspI CTAG 3 cut(s) 12, 593, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.