Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015696

Physical Location & Seq

Genomic Coordinates Forward (+)

20176031 .. 20176566

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAGGGATCGTGCAACCGGTCGTGCTCGTGGATTCGGGTTTGTTGTCTTTGCGGATCCTGCGGTTGCAGAAAGAGTTGTCATGGATAAGCACATGATCGATTGCCGCACATTTAGGTGGAAGCAAAGAAGGCTGTTCCTAAGGAGGATCGAACGTTTTAAACAGAACCGGGGTTGTCAATGGTTCCCCGGGTCCTGGACGCACAAAAAAGATTTTTGTTGGAGGTTTAGCATCCACAGTGACCGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0008150 GO:0008187 GO:0008266 GO:0009987 GO:0030154 GO:0032502 GO:0032991 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048863 GO:0048864 GO:0048869 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

84

Amino Acids

10.22

Weight (kDa)

11.25

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30961
malus_domestica	MD00G1000100.v1.1 MD10G1108000.v1.1 MD17G1252100.v1.1
prunus_persica	Prupe.1G291300_v2.0.a1 Prupe.7G065200_v2.0.a1
pyrus_communis	pycom11g17820
rosa_chinensis	RchiOBHm_Chr6g0273961
rosa_multiflora	Rmu_sc0002299.1_g000004 Rmu_sc0006493.1_g000007 Rmu_sc0024602.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049870
rosa_rugosa	Rorug01G0485500 Rorug05G0082700
rosa_samantha	Rh2DG235300 Rh6BG083700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	53, 62, 106
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	4 cut(s)	15, 50, 63, 155
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgeI	ACCGGT	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	28
AlwI	GGATC	4 cut(s)	15, 50, 63, 155
Ama87I	CYCGRG	1 cut(s)	188
AsiGI	ACCGGT	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	3 cut(s)	170, 189, 190
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	192
AxyI	CCTNAGG	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	196
BcnI	CCSGG	3 cut(s)	170, 189, 190
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	4 cut(s)	170, 189, 190, 196
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	3 cut(s)	57, 185, 193
BmrFI	CCNGG	4 cut(s)	170, 189, 190, 196
BmsI	GCATC	1 cut(s)	240
BpuMI	CCSGG	3 cut(s)	170, 189, 190
Bsa29I	ATCGAT	1 cut(s)	99
BsaJI	CCNNGG	3 cut(s)	169, 187, 188
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse118I	RCCGGY	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	196
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	169, 187, 188
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	22
BshTI	ACCGGT	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	18, 169, 189
BslI	CCNNNNNNNGG	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	7, 55, 96, 147
BspACI	CCGC	3 cut(s)	53, 62, 106
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	57, 185, 193
BspPI	GGATC	4 cut(s)	15, 50, 63, 155
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	169, 187, 188
BssMI	GATC	4 cut(s)	7, 55, 96, 147
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	4 cut(s)	10, 58, 99, 150
BstMBI	GATC	4 cut(s)	7, 55, 96, 147
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 130
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	4 cut(s)	168, 187, 188, 194
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	99
Bsu36I	CCTNAGG	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	192
Cfr9I	CCCGGG	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	99
CseI	GACGC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	17
CviAII	CATG	2 cut(s)	82, 94
CviJI	RGCY	1 cut(s)	133
CviKI_1	RGCY	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	4 cut(s)	9, 57, 98, 149
DpnII	GATC	4 cut(s)	7, 55, 96, 147
DraI	TTTAAA	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	194
FaeI	CATG	2 cut(s)	85, 97
FaiI	YATR	2 cut(s)	83, 95
FatI	CATG	2 cut(s)	81, 93
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	106
HapII	CCGG	3 cut(s)	18, 169, 189
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	85, 97
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	3 cut(s)	18, 169, 189
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	14, 68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 130
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	85, 97
Kzo9I	GATC	4 cut(s)	7, 55, 96, 147
LpnPI	CCDG	6 cut(s)	31, 72, 181, 182, 202, 208
LweI	GCATC	1 cut(s)	240
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	4 cut(s)	9, 57, 98, 149
MboI	GATC	4 cut(s)	7, 55, 96, 147
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	2 cut(s)	138, 216
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	115
MspI	CCGG	3 cut(s)	18, 169, 189
MspR9I	CCNGG	4 cut(s)	170, 189, 190, 196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	59, 130
NciI	CCSGG	3 cut(s)	170, 189, 190
NdeII	GATC	4 cut(s)	7, 55, 96, 147
NlaIII	CATG	2 cut(s)	85, 97
NlaIV	GGNNCC	3 cut(s)	57, 185, 193
NmuCI	GTSAC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	57, 185, 193
PspPI	GGNCC	1 cut(s)	192
PspPPI	RGGWCCY	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	4 cut(s)	7, 55, 96, 147
Sau96I	GGNCC	1 cut(s)	192
ScrFI	CCNGG	4 cut(s)	170, 189, 190, 196
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	3 cut(s)	119, 157, 227
SfaNI	GCATC	1 cut(s)	240
SinI	GGWCC	1 cut(s)	192
SmaI	CCCGGG	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	115
SsiI	CCGC	3 cut(s)	53, 62, 106
StyD4I	CCNGG	4 cut(s)	168, 187, 188, 194
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	99, 150
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	192
XmaI	CCCGGG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.