Rh6BG083700

Protein timeless homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015696
Physical Location & Seq
Reverse (-)
13114289 .. 13115323
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG083700.1

Sequence Viewer

Length: 612 bp
ATGGATCCGGATCTGGGCAAGCTTTTTATCGGCGGGATATGCGAAGACTCAGATGGATTCGGATCTGAGCAAGCTCTGTATCGGCAGGAATTCATGGGAGACGTCGGAGGACAATCTGAAGGAGTACTTCGGCAACTACCGCAACGTTTTGCAGACGGTGGTTATGAGAGACAGGATCACTCAAAGGCCCAGAGGTATGGCTTATCGGTGATCTGTAACGGCCTCGGAATCGCCCTAGACGACGACGACGGAAACCGGATCGGCTACAGAAAGCACAAGTACTGCTTAGATAATTTGAAGGATTTGCTGAGGTTCTTGAGGCGCGATGATCCGCAGAACCGGGATGTTTTCAAGGAAGTATGCAAGTGGAATATTGTATCTAAGGATTTGATACCTATTATTGAGCACTGCCAAGATGATCGTAGCTTGGTTTTAAATGCAGTGAAGGTTCTGGTGTTCTTAACTATGCCAGTTGAGCCTACAGCAAATGACATTTTACAACAAATTGAATTTTTATGGGAGTTGAAGTCTTCAATTACGTCTAGTGACATTGTTGCGGTTATAGTATCGCTTCAATTACGTCTACAAGTTTTTTTCTTTGTTGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIMELESS TIMELESS_C

Protein Analysis

203

Amino Acids

23.07

Weight (kDa)

4.9

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIMELESS PF04821 89 - 193 8e-26 Timeless protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 583
AccII CGCG 1 cut(s) 324
AccIII TCCGGA 1 cut(s) 7
AciI CCGC 4 cut(s) 33, 140, 332, 557
AclI AACGTT 1 cut(s) 145
AclWI GGATC 6 cut(s) 12, 18, 70, 183, 266, 323
AcsI RAATTY 2 cut(s) 89, 509
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 2 cut(s) 126, 281
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 6 cut(s) 298, 352, 509, 526, 534, 575
AluBI AGCT 3 cut(s) 22, 74, 426
AluI AGCT 3 cut(s) 22, 74, 426
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 93, 163
AlwI GGATC 6 cut(s) 12, 18, 70, 183, 266, 323
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 2 cut(s) 186, 220
ApoI RAATTY 2 cut(s) 89, 509
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 220
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 51, 522
Bbv12I GWGCWC 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 308
BccI CCATC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 235
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 93, 163
BfaI CTAG 2 cut(s) 236, 543
BfmI CTRYAG 2 cut(s) 265, 480
BmcAI AGTACT 2 cut(s) 126, 281
Bme1390I CCNGG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 341
BpiI GAAGAC 2 cut(s) 51, 522
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 341
BsaBI GATNNNNATC 2 cut(s) 9, 61
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 2 cut(s) 7, 255
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 470
Bse8I GATNNNNATC 2 cut(s) 9, 61
BseAI TCCGGA 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 349
BseJI GATNNNNATC 2 cut(s) 9, 61
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 57, 63, 299
BseNI ACTGG 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 188, 222
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 3 cut(s) 8, 256, 340
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 93, 163
BsmBI CGTCTC 1 cut(s) 93
BsnI GGCC 2 cut(s) 188, 222
Bsp1286I GDGCHC 1 cut(s) 408
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 8 cut(s) 4, 10, 62, 175, 210, 258, 328, 418
BspACI CCGC 4 cut(s) 33, 140, 332, 557
BspANI GGCC 2 cut(s) 188, 222
BspCNI CTCAG 3 cut(s) 58, 62, 300
BspEI TCCGGA 1 cut(s) 7
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 6 cut(s) 12, 18, 70, 183, 266, 323
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 8 cut(s) 4, 10, 62, 175, 210, 258, 328, 418
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 20, 72
BstDEI CTNAG 5 cut(s) 49, 66, 286, 308, 381
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 8 cut(s) 7, 13, 65, 178, 213, 261, 331, 421
BstMAI GTCTC 2 cut(s) 93, 163
BstMBI GATC 8 cut(s) 4, 10, 62, 175, 210, 258, 328, 418
BstMWI GCNNNNNNNGC 3 cut(s) 39, 139, 475
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 2 cut(s) 265, 480
BstUI CGCG 1 cut(s) 324
BstV2I GAAGAC 2 cut(s) 51, 522
BstX2I RGATCY 3 cut(s) 4, 10, 62
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 3 cut(s) 4, 10, 62
BsuRI GGCC 2 cut(s) 188, 222
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 2 cut(s) 406, 447
BtsIMutI CAGTG 2 cut(s) 406, 447
Cac8I GCNNGC 2 cut(s) 20, 72
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 125, 280
CviAII CATG 1 cut(s) 94
CviJI RGCY 8 cut(s) 22, 74, 188, 201, 222, 264, 426, 478
CviKI_1 RGCY 8 cut(s) 22, 74, 188, 201, 222, 264, 426, 478
CviQI GTAC 2 cut(s) 125, 280
DdeI CTNAG 5 cut(s) 49, 66, 286, 308, 381
DpnI GATC 8 cut(s) 6, 12, 64, 177, 212, 260, 330, 420
DpnII GATC 8 cut(s) 4, 10, 62, 175, 210, 258, 328, 418
DraI TTTAAA 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 8 cut(s) 40, 95, 165, 198, 361, 467, 517, 563
FalI AAGNNNNNCTT 4 cut(s) 111, 143, 269, 301
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 26
FblI GTMKAC 1 cut(s) 583
FokI GGATG 1 cut(s) 356
FspBI CTAG 2 cut(s) 236, 543
GlaI GCGC 1 cut(s) 323
HaeIII GGCC 2 cut(s) 188, 222
HapII CCGG 3 cut(s) 8, 256, 340
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 47, 57, 228
HpaII CCGG 3 cut(s) 8, 256, 340
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 584
Hpy188I TCNGA 6 cut(s) 52, 62, 67, 107, 118, 227
Hpy188III TCNNGA 2 cut(s) 8, 316
Hpy8I GTNNAC 1 cut(s) 584
Hpy99I CGWCG 4 cut(s) 107, 245, 248, 251
HpyAV CCTTC 3 cut(s) 113, 292, 439
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 4 cut(s) 102, 145, 539, 580
HpyCH4V TGCA 3 cut(s) 152, 363, 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 139, 475
HpyF3I CTNAG 5 cut(s) 49, 66, 286, 308, 381
HpySE526I ACGT 4 cut(s) 102, 145, 539, 580
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 322
Kpn2I TCCGGA 1 cut(s) 7
Kzo9I GATC 8 cut(s) 4, 10, 62, 175, 210, 258, 328, 418
LpnPI CCDG 8 cut(s) 21, 71, 158, 203, 269, 353, 437, 483
MaeI CTAG 2 cut(s) 236, 543
MaeII ACGT 4 cut(s) 102, 145, 539, 580
MaeIII GTNAC 2 cut(s) 215, 545
MalI GATC 8 cut(s) 6, 12, 64, 177, 212, 260, 330, 420
MboI GATC 8 cut(s) 4, 10, 62, 175, 210, 258, 328, 418
MboII GAAGA 2 cut(s) 56, 522
MflI RGATCY 3 cut(s) 4, 10, 62
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 7 cut(s) 89, 292, 504, 509, 534, 575, 607
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 5 cut(s) 101, 186, 233, 303, 312
MroI TCCGGA 1 cut(s) 7
MseI TTAA 4 cut(s) 434, 461, 606, 610
MspI CCGG 3 cut(s) 8, 256, 340
MspR9I CCNGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 39, 139, 475
NciI CCSGG 1 cut(s) 341
NdeII GATC 8 cut(s) 4, 10, 62, 175, 210, 258, 328, 418
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 545
PacI TTAATTAA 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 2 cut(s) 57, 228
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp1406I AACGTT 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 3 cut(s) 4, 10, 62
RsaI GTAC 2 cut(s) 126, 281
RsaNI GTAC 2 cut(s) 125, 280
SaqAI TTAA 4 cut(s) 434, 461, 606, 610
Sau3AI GATC 8 cut(s) 4, 10, 62, 175, 210, 258, 328, 418
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 2 cut(s) 126, 281
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 408
SfcI CTRYAG 2 cut(s) 265, 480
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 7 cut(s) 89, 292, 504, 509, 534, 575, 607
SsiI CCGC 4 cut(s) 33, 140, 332, 557
SspI AATATT 1 cut(s) 373
SspMI CTAG 2 cut(s) 236, 543
StyD4I CCNGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 4 cut(s) 105, 148, 542, 583
TasI AATT 7 cut(s) 89, 292, 504, 509, 534, 575, 607
TatI WGTACW 2 cut(s) 124, 279
TfiI GAWTC 2 cut(s) 57, 228
Tru1I TTAA 4 cut(s) 434, 461, 606, 610
Tru9I TTAA 4 cut(s) 434, 461, 606, 610
TscAI CASTG 2 cut(s) 413, 447
TseFI GTSAC 1 cut(s) 545
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 2 cut(s) 413, 447
XapI RAATTY 2 cut(s) 89, 509
XmiI GTMKAC 1 cut(s) 583
XspI CTAG 2 cut(s) 236, 543
ZraI GACGTC 1 cut(s) 103
ZrmI AGTACT 2 cut(s) 126, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.