Rorug01G0485500

Protein timeless homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004338
Physical Location & Seq
Forward (+)
57206289 .. 57211763
5475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0485500.1

Sequence Viewer

Length: 2139 bp
ATGGCGTCTCTACCTTTGAAGAAGAACTACAGGTGCGTCCCCTCTCTGCAACCGTTCTACTCCGGCGGCGCCTTTGCCGTCTCATCCGACGGTTCCTTCATCGCCTGCGCTTCCGACGAGTCCATTAACATCGTCGATGCCTCCAACTCCTCTGTACGCTCCACTCTGGAAGGCGACTCCGAGGCCGTCACTGCTTTAACCCTCAGCCCCGACGACAAATTCCTCTTCTCTTCTGGCCACAGTCGCCTCATTAGGGTTTGGGACCTCTCCACCTTCAAATGCGTCCGCTCTTGGAAGGGTCATGATGGGCCTGTGATGGGAATGGCTTGTCACCCATCCGGGGGATATCTTGCCACCGCCGGAGCCGATAAGAAGGTTATAGTTTGGGATGTTGCCGGTAGCTTTGCCACTCATCACTTTAAAGGTCACCAAGGGGTTGTTTCTAGTCTTCTCTTTCATCCAGATCCTACTAAGCAAATTCTTTTCTCCGCAAGTCATGATACAACTGTGAACGTCTGGGATCTAGATACTAAGAAGCGTGTCGCAACACTTACTGAGCATAACTCAACGGTAACATCTATGGCATTATCCGAAGATGGGCGCACGTTGCTCACAGCTGGAAGAGATAAGGTTGTGATCTTGTGGAACCTTGATGACTACAACTGCTTGAAGACTGTAACAACATATGAAGCCCTTGAAGCTGTGTGTGTAATTCCTTCTGGAACTCTTTTATCTTCCCGTTTCGGTTCATCCAAGCAGCGGAATGGAAAGAAAAGCAAGTCACCTGCAATATGTTTTATAACAGTTGGTGACCGTGGGATCGTACGAATTTGGAATTCTGAAGGTGCAGTTTGCCTATTTGAGCAGAAGTCCTCAGATGTTACTATCACCTCTGATGACGATGAATCGAAAAGGGGCTTTACTGCAGCTTTACTGCTACCATCAGATCAAGGGCTGCTTTGTGTGACAGCTGATCAGGAGTTCCTTTTATATTCTCCTGTTGAAAGCCCTGAAGGGACCTTTGAATTTGTTCTAAGCAAAAGACTTGTAGGAAATAATGGAGAGATTCTGGATATGAAATTTCTAGGTGATGAGGAACAATTTATCGCTGTCGCCACAAATACTGAACAGGTACGAGTGTTTGATGTTGCATCCATGTCATGTTCTCATGTATTGGCCGGTCATACTGAAATTGTTATGTGCCTTGACACCTGCGTATCAAGTTCCGGAAGAACACTTATAGTGACAGGAAGCAAGGATAATAGTGTTAGGTTGTGGGAATCAGAAAGCAGATGTTGCCTTGGTGTTGGCATAGGTCACATGGGATCTGTTGGAGCTATTGCTTTCTCAAAGAAGCAGAGGGACTTCTTTGTCAGTGGTAGTAGTGATCATACCCTCAAGGTCTGGAGTTTGGATGGTATCTCAGACAATGTGGAAAAGCCAATAAATTTGAAAGCAAAAGCTGTTGTAGCAGCCCACGATAAGGATATCAATTCAGTAGCTGTTGCACCAAATGATAGTTTAGTTTGTAGTGGTTCACAGGACCGCACTGCTTGTGTTTGGAGGCTTCCAGATCTTGTACCAGTAGTTGTACTTAAGGGTCATAAAAGAGGGGTTTGGTCTGTAGAGTTTTCTCCAGTTGATCAATGCATTCTGACTACATCTGGTGATAAAACAATAAAGATATGGGCTATATCAGATGGCTCGTGCTTAAAATCATTTGAAGGACACATGTCAAGTGTATATCGAGCATCATTTCTTACTCGTGGGACCCAATTTATTTCTTCTGATGCTGATGGTTTGGTGAAGCTGTGGATGGTAAAAACAAATGAATGCATTGCTACATATGATCAGCATGAGGACAAGGTTTGGGCATTGACTGTTGGAAAGAAGACAGAAATGGTTGCAACTGGCAGCGGTGATGCTGCCATCAATCTGTGGTATGATTGTACTGCCTCTGATAAAGAGGAAGCTTTCCGCAGAGAGGAGGAAGGCGTCCTGAAAAGTCAAGAACTAGAAAATGCTGTCAAAGATGCTGACTATACTAAAGCAATCCAAATTGCATTTAAGCTTCGCAGGCCTCATAAACTTTACGAGTGTTTTCATGAACTTTTCAGAGAGGGGATGAAAAGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIMELESS TIMELESS_C

Protein Analysis

712

Amino Acids

77.7

Weight (kDa)

5.92

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 25 - 100 3.1e-11 WDHD1 first WD40 domain
Beta-prop_DCAF4 PF23761 25 - 131 1.4e-06 DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_WDR5 PF25175 26 - 155 1.3e-22 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 26 - 130 1.2e-12 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 26 - 230 1.5e-36 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 27 - 131 4.9e-19 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 27 - 95 1.5e-06 WDR36/Utp21 second beta-propeller domain
WDR55 PF24796 28 - 130 1.8e-07 WDR55
Beta-prop_TEP1_2nd PF25047 29 - 223 3.5e-18 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 30 - 250 1e-26 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 30 - 245 4.6e-39 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 33 - 218 5.8e-16 WDR36/Utp21 first beta-propeller
WD40_Gbeta PF25391 49 - 245 8.9e-20 G protein beta WD-40 repeat protein
WD40 PF00400 53 - 88 5.6e-06 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 57 - 240 4.1e-37 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 64 - 203 7.6e-17 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 72 - 175 3.4e-11 MABP1/WDR62 second WD40 domain
WD40 PF00400 93 - 130 3e-09 WD domain, G-beta repeat
Beta-prop_EML PF23409 96 - 232 1.2e-09 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 99 - 246 1.3e-15 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 104 - 184 2.8e-10 WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st PF24780 108 - 228 1.2e-09 MABP1/WDR62 first WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 111 - 220 2.7e-11 WDR90/POC16, second beta-propeller
WDR55 PF24796 113 - 229 6.7e-11 WDR55
Beta-prop_WDR41 PF25178 117 - 219 1.4e-07 WDR41
Beta-prop_WDR3_1st PF25173 123 - 225 9.1e-22 WDR3 first beta-propeller domain
WD40 PF00400 138 - 174 2.7e-06 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 139 - 216 3.1e-11 WDR3 second beta-propeller domain
EIF3I PF24805 141 - 388 2.6e-10 EIF3I
Beta-prop_Aladin PF25460 142 - 244 5.1e-07 Aladin seven-bladed propeller
Beta-prop_IFT140_1st PF23383 147 - 223 2.2e-06 IFT140 first beta-propeller
WD40_MABP1-WDR62_2nd PF24782 155 - 217 7.8e-06 MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st PF24817 156 - 233 2.9e-10 WDHD1 first WD40 domain
WD40 PF00400 179 - 216 2.5e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 263 - 522 8.4e-20 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 314 - 471 3.6e-19 WDR5 beta-propeller domain
WD40_Gbeta PF25391 318 - 471 3.8e-09 G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd PF24782 319 - 471 2.9e-08 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 349 - 474 4.5e-07 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 351 - 472 6.4e-18 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 352 - 471 2.8e-15 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 353 - 474 4.5e-11 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 354 - 472 1.4e-11 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 367 - 473 1.3e-08 WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd PF24782 368 - 606 1.6e-16 MABP1/WDR62 second WD40 domain
WD40 PF00400 387 - 426 3.1e-07 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 414 - 608 2.1e-16 TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 431 - 574 7.2e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 440 - 569 1.5e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2 PF23414 448 - 625 6.8e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 453 - 577 1.2e-16 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 457 - 648 3.3e-30 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 484 - 647 1.4e-22 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 486 - 647 4.3e-24 Prp19 WD40 domain
Beta-prop_SCAP PF24017 486 - 610 5.9e-09 SCAP Beta-propeller
WD40_WDHD1_1st PF24817 486 - 577 3.3e-12 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 488 - 647 1.1e-32 WDR3 first beta-propeller domain
WD40 PF00400 489 - 521 2.5e-06 WD domain, G-beta repeat
EIF3I PF24805 490 - 593 6.1e-11 EIF3I
Beta-prop_WDR36-Utp21_2nd PF25168 491 - 652 1.2e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 491 - 649 1.3e-34 WDR5 beta-propeller domain
Beta-prop_EML PF23409 492 - 586 6.5e-08 Echinoderm microtubule-associated protein first beta-propeller
WDR55 PF24796 494 - 646 2.3e-14 WDR55
Beta-prop_EML PF23409 514 - 657 2e-11 Echinoderm microtubule-associated protein first beta-propeller
WD40 PF00400 528 - 563 2.8e-08 WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd PF23393 548 - 655 6.7e-06 WDR90/POC16, second beta-propeller
WD40_Gbeta PF25391 548 - 652 2.4e-13 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 549 - 648 1.6e-15 THOC3 beta-propeller domain
EIF3I PF24805 574 - 648 1.5e-08 EIF3I
Utp13 PF08625 670 - 706 1.9e-07 Utp13 specific WD40 associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 800
AarI CACCTGC 2 cut(s) 793, 1220
AasI GACNNNNNNGTC 1 cut(s) 1370
Acc36I ACCTGC 2 cut(s) 793, 1220
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 1 cut(s) 288
AccIII TCCGGA 1 cut(s) 1226
AciI CCGC 8 cut(s) 66, 286, 357, 489, 760, 1546, 1917, 1978
AclWI GGATC 4 cut(s) 458, 528, 827, 1333
AcoI YGGCCR 2 cut(s) 235, 1176
AcsI RAATTY 7 cut(s) 218, 477, 828, 835, 1025, 1079, 1447
AcuI CTGAAG 2 cut(s) 861, 1032
AcyI GRCGYC 3 cut(s) 5, 69, 1995
AfaI GTAC 6 cut(s) 156, 825, 1134, 1581, 1593, 1951
AfiI CCNNNNNNNGG 8 cut(s) 253, 317, 340, 341, 597, 759, 1483, 1984
AflII CTTAAG 1 cut(s) 1595
AflIII ACRYGT 1 cut(s) 1731
AgsI TTSAA 8 cut(s) 19, 277, 670, 698, 1004, 1025, 1453, 1724
Alw26I GTCTC 2 cut(s) 12, 85
AlwI GGATC 4 cut(s) 458, 528, 827, 1333
AlwNI CAGNNNCTG 1 cut(s) 1502
Aor13HI TCCGGA 1 cut(s) 1226
AoxI GGCC 5 cut(s) 183, 235, 308, 1176, 2078
ApeKI GCWGC 6 cut(s) 757, 926, 955, 1472, 1914, 1925
ApoI RAATTY 7 cut(s) 218, 477, 828, 835, 1025, 1079, 1447
Asp700I GAANNNNTTC 1 cut(s) 1029
AspLEI GCGC 3 cut(s) 71, 110, 603
AspS9I GGNCC 5 cut(s) 262, 308, 1017, 1543, 1770
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 9 cut(s) 323, 419, 774, 821, 880, 1100, 1679, 1816, 1931
AvaII GGWCC 4 cut(s) 262, 1017, 1543, 1770
BaeI ACNNNNGTAYC 6 cut(s) 492, 525, 1124, 1157, 1200, 1233
BalI TGGCCA 1 cut(s) 237
BanI GGYRCC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 11, 43
BauI CACGAG 2 cut(s) 1705, 1764
BbsI GAAGAC 3 cut(s) 440, 677, 1898
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 6 cut(s) 769, 938, 942, 1484, 1912, 1926
BceAI ACGGC 2 cut(s) 62, 170
BclI TGATCA 4 cut(s) 973, 1387, 1642, 1849
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 12, 85
BfaI CTAG 4 cut(s) 444, 524, 1085, 2015
BfmI CTRYAG 3 cut(s) 28, 924, 1623
BfoI RGCGCY 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 1595
BfuAI ACCTGC 2 cut(s) 793, 1220
BglII AGATCT 1 cut(s) 1573
BisI GCNGC 7 cut(s) 67, 758, 927, 956, 1473, 1915, 1926
BlsI GCNGC 7 cut(s) 68, 759, 928, 957, 1474, 1916, 1927
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 4 cut(s) 262, 1017, 1543, 1770
BmgT120I GGNCC 5 cut(s) 262, 308, 1017, 1543, 1770
BmiI GGNNCC 8 cut(s) 70, 94, 263, 364, 647, 1018, 1771, 1772
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 6 cut(s) 127, 1160, 1760, 1780, 1912, 2023
BoxI GACNNNNGTC 1 cut(s) 1732
BpiI GAAGAC 3 cut(s) 440, 677, 1898
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 2 cut(s) 1426, 1620
Bpu10I CCTNAGC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 1382
BpuMI CCSGG 1 cut(s) 340
BsaHI GRCGYC 3 cut(s) 5, 69, 1995
BsaJI CCNNGG 5 cut(s) 180, 339, 430, 814, 1300
BsaWI WCCGGW 1 cut(s) 1226
Bsc4I CCNNNNNNNGG 8 cut(s) 253, 317, 340, 341, 597, 759, 1483, 1984
Bse118I RCCGGY 2 cut(s) 395, 1178
Bse1I ACTGG 3 cut(s) 1583, 1637, 1915
Bse3DI GCAATG 1 cut(s) 1836
BseAI TCCGGA 1 cut(s) 1226
BseDI CCNNGG 5 cut(s) 180, 339, 430, 814, 1300
BseGI GGATG 9 cut(s) 83, 335, 394, 457, 749, 1151, 1420, 1821, 2130
BseLI CCNNNNNNNGG 8 cut(s) 253, 317, 340, 341, 597, 759, 1483, 1984
BseMI GCAATG 1 cut(s) 1836
BseMII CTCAG 4 cut(s) 217, 546, 888, 1437
BseNI ACTGG 3 cut(s) 1583, 1637, 1915
BseRI GAGGAG 2 cut(s) 139, 2000
BseXI GCAGC 6 cut(s) 769, 938, 942, 1484, 1912, 1926
BsgI GTGCAG 1 cut(s) 867
BshFI GGCC 5 cut(s) 185, 237, 310, 1178, 2080
BshNI GGYRCC 1 cut(s) 68
BsiSI CCGG 6 cut(s) 63, 339, 360, 396, 1179, 1227
BsiWI CGTACG 1 cut(s) 823
BslFI GGGAC 5 cut(s) 23, 275, 1030, 1376, 1783
BslI CCNNNNNNNGG 8 cut(s) 253, 317, 340, 341, 597, 759, 1483, 1984
BsmAI GTCTC 2 cut(s) 12, 85
BsmBI CGTCTC 2 cut(s) 12, 85
BsmFI GGGAC 5 cut(s) 23, 275, 1030, 1376, 1783
BsmI GAATGC 2 cut(s) 1650, 1838
BsnI GGCC 5 cut(s) 185, 237, 310, 1178, 2080
Bsp13I TCCGGA 1 cut(s) 1226
BspACI CCGC 8 cut(s) 66, 286, 357, 489, 760, 1546, 1917, 1978
BspANI GGCC 5 cut(s) 185, 237, 310, 1178, 2080
BspCNI CTCAG 4 cut(s) 216, 547, 887, 1436
BspEI TCCGGA 1 cut(s) 1226
BspHI TCATGA 3 cut(s) 301, 496, 2104
BspLI GGNNCC 8 cut(s) 70, 94, 263, 364, 647, 1018, 1771, 1772
BspMAI CTGCAG 1 cut(s) 928
BspMI ACCTGC 2 cut(s) 793, 1220
BspPI GGATC 4 cut(s) 458, 528, 827, 1333
BspT107I GGYRCC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 1595
BsrBI CCGCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 1836
BsrFI RCCGGY 2 cut(s) 395, 1178
BsrI ACTGG 3 cut(s) 1583, 1637, 1915
BssAI RCCGGY 2 cut(s) 395, 1178
BssECI CCNNGG 5 cut(s) 180, 339, 430, 814, 1300
BssNI GRCGYC 3 cut(s) 5, 69, 1995
BssSI CACGAG 2 cut(s) 1705, 1764
BssT1I CCWWGG 2 cut(s) 430, 1300
Bst2BI CACGAG 2 cut(s) 1705, 1764
Bst4CI ACNGT 9 cut(s) 54, 92, 242, 508, 571, 676, 805, 815, 1882
Bst6I CTCTTC 3 cut(s) 230, 235, 616
BstACI GRCGYC 3 cut(s) 5, 69, 1995
BstAFI CTTAAG 1 cut(s) 1595
BstAPI GCANNNNNTGC 1 cut(s) 1296
BstC8I GCNNGC 2 cut(s) 106, 2078
BstDEI CTNAG 7 cut(s) 203, 471, 531, 555, 874, 1034, 1423
BstDSI CCRYGG 1 cut(s) 814
BstEII GGTNACC 2 cut(s) 425, 809
BstF5I GGATG 9 cut(s) 83, 335, 394, 457, 749, 1151, 1420, 1821, 2130
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 3 cut(s) 71, 110, 603
BstMAI GTCTC 2 cut(s) 12, 85
BstMWI GCNNNNNNNGC 7 cut(s) 191, 243, 607, 698, 1296, 1469, 2077
BstNSI RCATGY 1 cut(s) 1735
BstPAI GACNNNNGTC 1 cut(s) 1732
BstPI GGTNACC 2 cut(s) 425, 809
BstSCI CCNGG 1 cut(s) 338
BstSFI CTRYAG 3 cut(s) 28, 924, 1623
BstV1I GCAGC 6 cut(s) 769, 938, 942, 1484, 1912, 1926
BstV2I GAAGAC 3 cut(s) 440, 677, 1898
BstX2I RGATCY 4 cut(s) 463, 520, 1325, 1573
BstYI RGATCY 4 cut(s) 463, 520, 1325, 1573
BsuRI GGCC 5 cut(s) 185, 237, 310, 1178, 2080
BtgI CCRYGG 1 cut(s) 814
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 9 cut(s) 83, 335, 394, 457, 749, 1151, 1420, 1821, 2130
BtsI GCAGTG 2 cut(s) 189, 1548
BtsIMutI CAGTG 3 cut(s) 189, 1381, 1548
BveI ACCTGC 2 cut(s) 793, 1220
Cac8I GCNNGC 2 cut(s) 106, 2078
CaiI CAGNNNCTG 1 cut(s) 1502
CciI TCATGA 3 cut(s) 301, 496, 2104
CfoI GCGC 3 cut(s) 71, 110, 603
Cfr10I RCCGGY 2 cut(s) 395, 1178
Cfr13I GGNCC 5 cut(s) 262, 308, 1017, 1543, 1770
CseI GACGC 3 cut(s) 25, 271, 1984
Csp6I GTAC 6 cut(s) 155, 824, 1133, 1580, 1592, 1950
CviAII CATG 9 cut(s) 302, 497, 1156, 1161, 1169, 1321, 1732, 1856, 2105
CviQI GTAC 6 cut(s) 155, 824, 1133, 1580, 1592, 1950
DdeI CTNAG 7 cut(s) 203, 471, 531, 555, 874, 1034, 1423
DinI GGCGCC 1 cut(s) 70
DraI TTTAAA 1 cut(s) 421
DrdI GACNNNNNNGTC 1 cut(s) 1370
DseDI GACNNNNNNGTC 1 cut(s) 1370
EaeI YGGCCR 2 cut(s) 235, 1176
Eam1104I CTCTTC 3 cut(s) 230, 235, 616
EarI CTCTTC 3 cut(s) 230, 235, 616
Eco130I CCWWGG 2 cut(s) 430, 1300
Eco147I AGGCCT 1 cut(s) 2080
Eco32I GATATC 2 cut(s) 347, 1489
Eco47I GGWCC 4 cut(s) 262, 1017, 1543, 1770
Eco57I CTGAAG 2 cut(s) 861, 1032
Eco91I GGTNACC 2 cut(s) 425, 809
EcoO109I RGGNCCY 3 cut(s) 262, 1017, 1770
EcoO65I GGTNACC 2 cut(s) 425, 809
EcoRI GAATTC 1 cut(s) 835
EcoRV GATATC 2 cut(s) 347, 1489
EcoT14I CCWWGG 2 cut(s) 430, 1300
EcoT22I ATGCAT 2 cut(s) 1652, 1838
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 430, 1300
Esp3I CGTCTC 2 cut(s) 12, 85
FaeI CATG 9 cut(s) 305, 500, 1159, 1164, 1172, 1324, 1735, 1859, 2108
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 5 cut(s) 23, 275, 1030, 1376, 1783
FatI CATG 9 cut(s) 301, 496, 1155, 1160, 1168, 1320, 1731, 1855, 2104
FauNDI CATATG 2 cut(s) 685, 1846
FbaI TGATCA 4 cut(s) 973, 1387, 1642, 1849
Fnu4HI GCNGC 7 cut(s) 67, 758, 927, 956, 1473, 1915, 1926
FokI GGATG 8 cut(s) 70, 322, 401, 444, 736, 1138, 1427, 1828
Fsp4HI GCNGC 7 cut(s) 67, 758, 927, 956, 1473, 1915, 1926
FspBI CTAG 4 cut(s) 444, 524, 1085, 2015
GlaI GCGC 3 cut(s) 70, 109, 602
GluI GCNGC 7 cut(s) 67, 758, 927, 956, 1473, 1915, 1926
GsuI CTGGAG 2 cut(s) 1426, 1620
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 5 cut(s) 185, 237, 310, 1178, 2080
HapII CCGG 6 cut(s) 63, 339, 360, 396, 1179, 1227
HgaI GACGC 3 cut(s) 25, 271, 1984
HhaI GCGC 3 cut(s) 71, 110, 603
Hin1I GRCGYC 3 cut(s) 5, 69, 1995
Hin1II CATG 9 cut(s) 305, 500, 1159, 1164, 1172, 1324, 1735, 1859, 2108
Hin6I GCGC 3 cut(s) 69, 108, 601
HinP1I GCGC 3 cut(s) 69, 108, 601
HindIII AAGCTT 2 cut(s) 1971, 2069
HinfI GANTC 5 cut(s) 119, 176, 905, 1066, 1280
HpaII CCGG 6 cut(s) 63, 339, 360, 396, 1179, 1227
HphI GGTGA 9 cut(s) 323, 419, 774, 821, 880, 1100, 1679, 1816, 1931
Hpy166II GTNNAC 2 cut(s) 511, 1538
Hpy8I GTNNAC 2 cut(s) 511, 1538
Hpy99I CGWCG 4 cut(s) 92, 119, 137, 215
HpyCH4III ACNGT 9 cut(s) 54, 92, 242, 508, 571, 676, 805, 815, 1882
HpyCH4IV ACGT 2 cut(s) 513, 605
HpyF10VI GCNNNNNNNGC 7 cut(s) 191, 243, 607, 698, 1296, 1469, 2077
HpyF3I CTNAG 7 cut(s) 203, 471, 531, 555, 874, 1034, 1423
HpySE526I ACGT 2 cut(s) 513, 605
Hsp92I GRCGYC 3 cut(s) 5, 69, 1995
Hsp92II CATG 9 cut(s) 305, 500, 1159, 1164, 1172, 1324, 1735, 1859, 2108
HspAI GCGC 3 cut(s) 69, 108, 601
KasI GGCGCC 1 cut(s) 68
KflI GGGWCCC 1 cut(s) 1770
Kpn2I TCCGGA 1 cut(s) 1226
Ksp22I TGATCA 4 cut(s) 973, 1387, 1642, 1849
LmnI GCTCC 3 cut(s) 164, 362, 1334
Lsp1109I GCAGC 6 cut(s) 769, 938, 942, 1484, 1912, 1926
LweI GCATC 6 cut(s) 127, 1160, 1760, 1780, 1912, 2023
MaeI CTAG 4 cut(s) 444, 524, 1085, 2015
MaeII ACGT 2 cut(s) 513, 605
MbiI CCGCTC 1 cut(s) 288
MflI RGATCY 4 cut(s) 463, 520, 1325, 1573
MlsI TGGCCA 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 237
Mly113I GGCGCC 1 cut(s) 69
MlyI GAGTC 2 cut(s) 128, 170
MmeI TCCRAC 5 cut(s) 111, 138, 168, 1312, 1864
Mox20I TGGCCA 1 cut(s) 237
Mph1103I ATGCAT 2 cut(s) 1652, 1838
MroI TCCGGA 1 cut(s) 1226
MroXI GAANNNNTTC 1 cut(s) 1029
MscI TGGCCA 1 cut(s) 237
MseI TTAA 6 cut(s) 126, 197, 420, 1596, 1712, 2067
Msp20I TGGCCA 1 cut(s) 237
MspA1I CMGCKG 4 cut(s) 617, 760, 971, 1917
MspCI CTTAAG 1 cut(s) 1595
MspI CCGG 6 cut(s) 63, 339, 360, 396, 1179, 1227
MspR9I CCNGG 1 cut(s) 340
Mva1269I GAATGC 2 cut(s) 1650, 1838
MwoI GCNNNNNNNGC 7 cut(s) 191, 243, 607, 698, 1296, 1469, 2077
NarI GGCGCC 1 cut(s) 69
NciI CCSGG 1 cut(s) 340
NdeI CATATG 2 cut(s) 685, 1846
NlaIII CATG 9 cut(s) 305, 500, 1159, 1164, 1172, 1324, 1735, 1859, 2108
NlaIV GGNNCC 8 cut(s) 70, 94, 263, 364, 647, 1018, 1771, 1772
NmuCI GTSAC 8 cut(s) 187, 329, 425, 780, 809, 964, 1243, 1316
NsiI ATGCAT 2 cut(s) 1652, 1838
NspI RCATGY 1 cut(s) 1735
PagI TCATGA 3 cut(s) 301, 496, 2104
PaqCI CACCTGC 2 cut(s) 793, 1220
PceI AGGCCT 1 cut(s) 2080
PciI ACATGT 1 cut(s) 1731
PctI GAATGC 2 cut(s) 1650, 1838
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 3 cut(s) 905, 1066, 1280
Pfl23II CGTACG 1 cut(s) 823
PkrI GCNGC 7 cut(s) 68, 759, 928, 957, 1474, 1916, 1927
PleI GAGTC 2 cut(s) 127, 170
PluTI GGCGCC 1 cut(s) 72
PpsI GAGTC 2 cut(s) 127, 170
PpuMI RGGWCCY 3 cut(s) 262, 1017, 1770
PscI ACATGT 1 cut(s) 1731
PshAI GACNNNNGTC 1 cut(s) 1732
PsiI TTATAA 1 cut(s) 800
Psp5II RGGWCCY 3 cut(s) 262, 1017, 1770
PspEI GGTNACC 2 cut(s) 425, 809
PspLI CGTACG 1 cut(s) 823
PspN4I GGNNCC 8 cut(s) 70, 94, 263, 364, 647, 1018, 1771, 1772
PspPI GGNCC 5 cut(s) 262, 308, 1017, 1543, 1770
PspPPI RGGWCCY 3 cut(s) 262, 1017, 1770
PstI CTGCAG 1 cut(s) 928
PstNI CAGNNNCTG 1 cut(s) 1502
PsuI RGATCY 4 cut(s) 463, 520, 1325, 1573
PvuII CAGCTG 2 cut(s) 617, 971
RsaI GTAC 6 cut(s) 156, 825, 1134, 1581, 1593, 1951
RsaNI GTAC 6 cut(s) 155, 824, 1133, 1580, 1592, 1950
SaqAI TTAA 6 cut(s) 126, 197, 420, 1596, 1712, 2067
SatI GCNGC 7 cut(s) 67, 758, 927, 956, 1473, 1915, 1926
Sau96I GGNCC 5 cut(s) 262, 308, 1017, 1543, 1770
SchI GAGTC 2 cut(s) 128, 170
ScrFI CCNGG 1 cut(s) 340
SfaNI GCATC 6 cut(s) 127, 1160, 1760, 1780, 1912, 2023
SfcI CTRYAG 3 cut(s) 28, 924, 1623
SfoI GGCGCC 1 cut(s) 70
SinI GGWCC 4 cut(s) 262, 1017, 1543, 1770
SmlI CTYRAG 2 cut(s) 1397, 1595
SmoI CTYRAG 2 cut(s) 1397, 1595
SseBI AGGCCT 1 cut(s) 2080
SsiI CCGC 8 cut(s) 66, 286, 357, 489, 760, 1546, 1917, 1978
SspDI GGCGCC 1 cut(s) 68
SspMI CTAG 4 cut(s) 444, 524, 1085, 2015
StuI AGGCCT 1 cut(s) 2080
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 2 cut(s) 430, 1300
TaaI ACNGT 9 cut(s) 54, 92, 242, 508, 571, 676, 805, 815, 1882
TaiI ACGT 2 cut(s) 516, 608
TaqI TCGA 3 cut(s) 135, 908, 1747
TatI WGTACW 2 cut(s) 1591, 1949
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 3 cut(s) 905, 1066, 1280
Tru1I TTAA 6 cut(s) 126, 197, 420, 1596, 1712, 2067
Tru9I TTAA 6 cut(s) 126, 197, 420, 1596, 1712, 2067
TscAI CASTG 3 cut(s) 196, 1381, 1555
TseFI GTSAC 8 cut(s) 187, 329, 425, 780, 809, 964, 1243, 1316
TseI GCWGC 6 cut(s) 757, 926, 955, 1472, 1914, 1925
Tsp45I GTSAC 8 cut(s) 187, 329, 425, 780, 809, 964, 1243, 1316
TspDTI ATGAA 9 cut(s) 88, 446, 702, 738, 918, 1091, 1845, 2093, 2121
TspRI CASTG 3 cut(s) 196, 1381, 1555
Vha464I CTTAAG 1 cut(s) 1595
VpaK11BI GGWCC 4 cut(s) 262, 1017, 1543, 1770
XapI RAATTY 7 cut(s) 218, 477, 828, 835, 1025, 1079, 1447
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 1 cut(s) 1735
XmnI GAANNNNTTC 1 cut(s) 1029
XspI CTAG 4 cut(s) 444, 524, 1085, 2015
Zsp2I ATGCAT 2 cut(s) 1652, 1838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.