Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015442.1

Orthogroup ID

OG0004338

Physical Location & Seq

Genomic Coordinates Reverse (-)

13964 .. 16266

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015442.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

atgtttaaggtaaaaattgaacaagaacttaccaatgtctgtattgaagcaaagattgcaatggtcttgtatctgccaaggaaggaatcggcgaggaaccctccaagcaaacaaaggaggaaggatgtgcctaaaaagtctgtgacaatatttgcttcaatacagacattgggcactgctgcattagcaatatcagtaaaattgccgcagctgcgcccacctcattgtgatattactgctgccaacaacaactgcaaacaagccaataagctccaaatgggaattctttacttggctttatatataattgcattagggactggtgggttgaaatcaagtgtttcaggatttggaactgatcaatttgatgaaaaagatgacagagagaaagcgcagatggcatatttcttcaatagatttttctttttcattagcactggaaccttggtggcagtcacagtccttgtctacatacaagacaaagtggacagaagctgggcctatggaatttgttccatttcaatgttcatagccatcttggtgtttttttcggggactaaaagatacagatataagaaaagcttgggaagtcccatagttcaaatttttcaggttattgtggctgctataaggaagagaaagatgccacttccatttgacgttgccttgttgtatgagaattatcccgaggcttcaagaactggtcacacagatcagttccgtttcatggacaaggcatctattgtggcagaagaagattcccagagaaatgaaccagcaggttctgttccgaacccatggactttatgctcagttacaagagtggaggaggtgaaaatgatggtgaaactacttccgatatgggccacgaccatcatcttttggacaacatacggacagatgatgaccttctcagtagaacaagcatccaccatggagagatccattggaaagtttcaaatcccagctggctctctcacagtcttctttgtgttggccatattgatcacattggctgttaatgaccgtctcattatgcctatttggaagaaatggaagggccagccaggtttcaccgatctacagagaattgcacttggccttgttctatcgactcttggaatggcagcggcagcactaaccgagaggaagcggctatcagtggctaaagaaatgagaactatgagtacaggtcctctgcctattagtgtgtacttgttaatcccacaattcttcttggtgggttctggtgaagctttcatctacactggccagctcgatttctttatcactcaatcaccaaaaggaatgaaaactatgagcacaggactcttcctgagcactttatcactaggcttgtttttcagtagcttcttggtttcaattgtgaggaggttcaccggaagcaaagatgggcaaggatggctggcagacaatatcaactatggaaggcttgactgtttctatggacttttgagcgttttaagtgtcattaattttgtagcatatctagtttgtgcaagatggtacaagccaagaaaacctaacaaaccatccaacggttcctcagctgaggataggtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

528

Amino Acids

59.14

Weight (kDa)

9.69

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26690 AT2G26690 AT2G26690
fragaria_vesca	FvH4_1g03370
malus_domestica	MD15G1173800.v1.1
prunus_persica	Prupe.7G241900_v2.0.a1 Prupe.7G241900_v2.0.a1 Prupe.7G242000_v2.0.a1
pyrus_communis	pycom02g02740 pycom15g15560 pycom15g15570
rosa_chinensis	RchiOBHm_Chr2g0088601 RchiOBHm_Chr2g0088621
rosa_laevigata	RLG00000015969 RLG00000015970
rosa_multiflora	Rmu_sc0010700.1_g000001 Rmu_sc0010700.1_g000005 Rmu_sc0015442.1_g000005
rosa_roxburghii	Rroxscaffold_2G00152500
rosa_rugosa	Rorug01G0485500
rosa_samantha	Rh2AG040800 Rh2AG040900 Rh2BG039500 Rh2BG039600 Rh2BG039700 Rh2CG040300 Rh2CG040400 Rh2DG039900 Rh2DG040000
rosa_wichuraiana	Rw2G003170 Rw2G003350 Rw2G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	468
AciI	CCGC	3 cut(s)	206, 1130, 1153
AclWI	GGATC	1 cut(s)	936
AcoI	YGGCCR	2 cut(s)	996, 1270
AcsI	RAATTY	3 cut(s)	282, 507, 603
AfaI	GTAC	3 cut(s)	1189, 1214, 1529
AfiI	CCNNNNNNNGG	2 cut(s)	727, 1559
AjnI	CCWGG	1 cut(s)	1066
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	9 cut(s)	211, 271, 495, 582, 968, 1256, 1276, 1371, 1571
AluI	AGCT	9 cut(s)	211, 271, 495, 582, 968, 1256, 1276, 1371, 1571
Alw21I	GWGCWC	2 cut(s)	1325, 1343
Alw26I	GTCTC	1 cut(s)	1034
AlwI	GGATC	1 cut(s)	936
AlwNI	CAGNNNCTG	2 cut(s)	495, 785
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	6 cut(s)	498, 864, 996, 1060, 1099, 1270
ApeKI	GCWGC	7 cut(s)	179, 208, 211, 239, 623, 1127, 1133
ApoI	RAATTY	3 cut(s)	282, 507, 603
AseI	ATTAAT	1 cut(s)	1494
Asp700I	GAANNNNTTC	1 cut(s)	511
AspLEI	GCGC	2 cut(s)	216, 394
AspS9I	GGNCC	4 cut(s)	498, 864, 1060, 1193
AsuHPI	GGTGA	6 cut(s)	844, 856, 1066, 1262, 1290, 1390
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	1193
BaeGI	GKGCMC	1 cut(s)	176
BalI	TGGCCA	2 cut(s)	998, 1272
BbsI	GAAGAC	1 cut(s)	976
Bbv12I	GWGCWC	2 cut(s)	1325, 1343
BbvCI	CCTCAGC	2 cut(s)	1567, 1572
BbvI	GCAGC	7 cut(s)	166, 198, 220, 226, 610, 1139, 1145
BccI	CCATC	8 cut(s)	391, 542, 835, 881, 1406, 1416, 1518, 1561
BciT130I	CCWGG	1 cut(s)	1068
BclI	TGATCA	2 cut(s)	358, 1005
BcoDI	GTCTC	1 cut(s)	1034
BfaI	CTAG	2 cut(s)	1352, 1511
BfmI	CTRYAG	1 cut(s)	1082
BfuAI	ACCTGC	1 cut(s)	770
Bme1390I	CCNGG	1 cut(s)	1068
Bme18I	GGWCC	1 cut(s)	1193
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	4 cut(s)	498, 864, 1060, 1193
BmiI	GGNNCC	3 cut(s)	98, 442, 1564
BmrFI	CCNGG	1 cut(s)	1068
BmsI	GCATC	3 cut(s)	633, 746, 935
BpiI	GAAGAC	1 cut(s)	976
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
Bpu10I	CCTNAGC	3 cut(s)	1337, 1567, 1572
BsaJI	CCNNGG	5 cut(s)	77, 444, 687, 797, 933
BsaWI	WCCGGW	1 cut(s)	1400
Bsc4I	CCNNNNNNNGG	2 cut(s)	727, 1559
Bse1I	ACTGG	4 cut(s)	325, 442, 706, 1273
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	1068
BseDI	CCNNGG	5 cut(s)	77, 444, 687, 797, 933
BseGI	GGATG	4 cut(s)	130, 926, 1427, 1553
BseLI	CCNNNNNNNGG	2 cut(s)	727, 1559
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	5 cut(s)	825, 927, 1328, 1563, 1581
BseNI	ACTGG	4 cut(s)	325, 442, 706, 1273
BseRI	GAGGAG	2 cut(s)	842, 1405
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	7 cut(s)	166, 198, 220, 226, 610, 1139, 1145
BseYI	CCCAGC	2 cut(s)	495, 964
BshFI	GGCC	6 cut(s)	500, 866, 998, 1062, 1101, 1272
BsiHKAI	GWGCWC	2 cut(s)	1325, 1343
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	1401
BslFI	GGGAC	3 cut(s)	331, 568, 576
BslI	CCNNNNNNNGG	2 cut(s)	727, 1559
BsmAI	GTCTC	1 cut(s)	1034
BsmBI	CGTCTC	1 cut(s)	1034
BsmFI	GGGAC	3 cut(s)	331, 568, 576
BsnI	GGCC	6 cut(s)	500, 866, 998, 1062, 1101, 1272
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	176, 1325, 1343
Bsp143I	GATC	5 cut(s)	358, 712, 941, 1005, 1078
Bsp19I	CCATGG	2 cut(s)	797, 933
BspACI	CCGC	3 cut(s)	206, 1130, 1153
BspANI	GGCC	6 cut(s)	500, 866, 998, 1062, 1101, 1272
BspCNI	CTCAG	5 cut(s)	824, 926, 1329, 1564, 1580
BspLI	GGNNCC	3 cut(s)	98, 442, 1564
BspMI	ACCTGC	1 cut(s)	770
BspPI	GGATC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	4 cut(s)	325, 442, 706, 1273
BssECI	CCNNGG	5 cut(s)	77, 444, 687, 797, 933
BssMI	GATC	5 cut(s)	358, 712, 941, 1005, 1078
BssT1I	CCWWGG	4 cut(s)	77, 444, 797, 933
Bst2UI	CCWGG	1 cut(s)	1068
Bst4CI	ACNGT	5 cut(s)	460, 982, 1028, 1460, 1562
Bst6I	CTCTTC	2 cut(s)	629, 1337
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	4 cut(s)	970, 1064, 1274, 1428
BstDEI	CTNAG	5 cut(s)	811, 913, 1337, 1567, 1572
BstDSI	CCRYGG	2 cut(s)	797, 933
BstF5I	GGATG	4 cut(s)	130, 926, 1427, 1553
BstHHI	GCGC	2 cut(s)	216, 394
BstKTI	GATC	5 cut(s)	361, 715, 944, 1008, 1081
BstMAI	GTCTC	1 cut(s)	1034
BstMBI	GATC	5 cut(s)	358, 712, 941, 1005, 1078
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 185, 211, 398, 1133, 1423
BstNI	CCWGG	1 cut(s)	1068
BstSCI	CCNGG	1 cut(s)	1066
BstSFI	CTRYAG	1 cut(s)	1082
BstSLI	GKGCMC	1 cut(s)	176
BstV1I	GCAGC	7 cut(s)	166, 198, 220, 226, 610, 1139, 1145
BstV2I	GAAGAC	1 cut(s)	976
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BsuRI	GGCC	6 cut(s)	500, 866, 998, 1062, 1101, 1272
BtgI	CCRYGG	2 cut(s)	797, 933
BtsCI	GGATG	4 cut(s)	130, 926, 1427, 1553
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	4 cut(s)	174, 435, 1167, 1266
BveI	ACCTGC	1 cut(s)	770
Cac8I	GCNNGC	4 cut(s)	970, 1064, 1274, 1428
CaiI	CAGNNNCTG	2 cut(s)	495, 785
CfoI	GCGC	2 cut(s)	216, 394
Cfr13I	GGNCC	4 cut(s)	498, 864, 1060, 1193
Csp6I	GTAC	3 cut(s)	1188, 1213, 1528
CviAII	CATG	3 cut(s)	727, 798, 934
CviQI	GTAC	3 cut(s)	1188, 1213, 1528
DdeI	CTNAG	5 cut(s)	811, 913, 1337, 1567, 1572
DpnI	GATC	5 cut(s)	360, 714, 943, 1007, 1080
DpnII	GATC	5 cut(s)	358, 712, 941, 1005, 1078
EaeI	YGGCCR	2 cut(s)	996, 1270
Eam1104I	CTCTTC	2 cut(s)	629, 1337
EarI	CTCTTC	2 cut(s)	629, 1337
Eco130I	CCWWGG	4 cut(s)	77, 444, 797, 933
Eco47I	GGWCC	1 cut(s)	1193
Eco88I	CYCGRG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	1193
EcoRI	GAATTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	1066
EcoT14I	CCWWGG	4 cut(s)	77, 444, 797, 933
ErhI	CCWWGG	4 cut(s)	77, 444, 797, 933
Esp3I	CGTCTC	1 cut(s)	1034
FaeI	CATG	3 cut(s)	730, 801, 937
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	3 cut(s)	331, 568, 576
FatI	CATG	3 cut(s)	726, 797, 933
FbaI	TGATCA	2 cut(s)	358, 1005
FblI	GTMKAC	1 cut(s)	468
FokI	GGATG	4 cut(s)	137, 913, 1434, 1540
FspBI	CTAG	2 cut(s)	1352, 1511
GlaI	GCGC	2 cut(s)	215, 393
GsaI	CCCAGC	2 cut(s)	499, 968
HaeIII	GGCC	6 cut(s)	500, 866, 998, 1062, 1101, 1272
HapII	CCGG	1 cut(s)	1401
HhaI	GCGC	2 cut(s)	216, 394
Hin1II	CATG	3 cut(s)	730, 801, 937
Hin6I	GCGC	2 cut(s)	214, 392
HinP1I	GCGC	2 cut(s)	214, 392
HindIII	AAGCTT	2 cut(s)	580, 1254
HinfI	GANTC	4 cut(s)	86, 758, 1114, 1329
HpaII	CCGG	1 cut(s)	1401
HphI	GGTGA	6 cut(s)	844, 856, 1066, 1262, 1290, 1390
Hpy166II	GTNNAC	4 cut(s)	469, 487, 1213, 1398
Hpy188I	TCNGA	2 cut(s)	792, 858
Hpy188III	TCNNGA	4 cut(s)	345, 686, 696, 1336
Hpy8I	GTNNAC	4 cut(s)	469, 487, 1213, 1398
HpyAV	CCTTC	5 cut(s)	76, 115, 919, 1051, 1443
HpyCH4III	ACNGT	5 cut(s)	460, 982, 1028, 1460, 1562
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	6 cut(s)	59, 182, 255, 311, 1094, 1520
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 185, 211, 398, 1133, 1423
HpyF3I	CTNAG	5 cut(s)	811, 913, 1337, 1567, 1572
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	3 cut(s)	730, 801, 937
HspAI	GCGC	2 cut(s)	214, 392
Ksp22I	TGATCA	2 cut(s)	358, 1005
Kzo9I	GATC	5 cut(s)	358, 712, 941, 1005, 1078
LmnI	GCTCC	1 cut(s)	276
Lsp1109I	GCAGC	7 cut(s)	166, 198, 220, 226, 610, 1139, 1145
LweI	GCATC	3 cut(s)	633, 746, 935
MaeI	CTAG	2 cut(s)	1352, 1511
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	4 cut(s)	142, 454, 704, 814
MalI	GATC	5 cut(s)	360, 714, 943, 1007, 1080
MboI	GATC	5 cut(s)	358, 712, 941, 1005, 1078
MboII	GAAGA	8 cut(s)	400, 646, 764, 767, 976, 1060, 1225, 1324
MfeI	CAATTG	1 cut(s)	1383
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	3 cut(s)	176, 1325, 1343
MlsI	TGGCCA	2 cut(s)	998, 1272
MluNI	TGGCCA	2 cut(s)	998, 1272
MlyI	GAGTC	2 cut(s)	1108, 1323
MmeI	TCCRAC	1 cut(s)	1581
Mox20I	TGGCCA	2 cut(s)	998, 1272
MroXI	GAANNNNTTC	1 cut(s)	511
MscI	TGGCCA	2 cut(s)	998, 1272
MseI	TTAA	6 cut(s)	6, 1020, 1220, 1484, 1494, 1585
MslI	CAYNNNNRTG	2 cut(s)	521, 539
Msp20I	TGGCCA	2 cut(s)	998, 1272
MspA1I	CMGCKG	4 cut(s)	211, 968, 1130, 1571
MspI	CCGG	1 cut(s)	1401
MspR9I	CCNGG	1 cut(s)	1068
MunI	CAATTG	1 cut(s)	1383
MvaI	CCWGG	1 cut(s)	1068
MwoI	GCNNNNNNNGC	6 cut(s)	56, 185, 211, 398, 1133, 1423
NcoI	CCATGG	2 cut(s)	797, 933
NdeII	GATC	5 cut(s)	358, 712, 941, 1005, 1078
NlaIII	CATG	3 cut(s)	730, 801, 937
NlaIV	GGNNCC	3 cut(s)	98, 442, 1564
NmuCI	GTSAC	3 cut(s)	142, 454, 704
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	86, 758
PleI	GAGTC	2 cut(s)	1108, 1323
PpsI	GAGTC	2 cut(s)	1108, 1323
PpuMI	RGGWCCY	1 cut(s)	1193
PshBI	ATTAAT	1 cut(s)	1494
Psp5II	RGGWCCY	1 cut(s)	1193
Psp6I	CCWGG	1 cut(s)	1066
PspFI	CCCAGC	2 cut(s)	495, 964
PspGI	CCWGG	1 cut(s)	1066
PspN4I	GGNNCC	3 cut(s)	98, 442, 1564
PspPI	GGNCC	4 cut(s)	498, 864, 1060, 1193
PspPPI	RGGWCCY	1 cut(s)	1193
PsrI	GAACNNNNNNTAC	2 cut(s)	1171, 1203
PstNI	CAGNNNCTG	2 cut(s)	495, 785
PsuI	RGATCY	1 cut(s)	941
PvuII	CAGCTG	3 cut(s)	211, 968, 1571
RsaI	GTAC	3 cut(s)	1189, 1214, 1529
RsaNI	GTAC	3 cut(s)	1188, 1213, 1528
RseI	CAYNNNNRTG	2 cut(s)	521, 539
SaqAI	TTAA	6 cut(s)	6, 1020, 1220, 1484, 1494, 1585
Sau3AI	GATC	5 cut(s)	358, 712, 941, 1005, 1078
Sau96I	GGNCC	4 cut(s)	498, 864, 1060, 1193
SchI	GAGTC	2 cut(s)	1108, 1323
ScrFI	CCNGG	1 cut(s)	1068
SduI	GDGCHC	3 cut(s)	176, 1325, 1343
SfaNI	GCATC	3 cut(s)	633, 746, 935
SfcI	CTRYAG	1 cut(s)	1082
SinI	GGWCC	1 cut(s)	1193
SmiMI	CAYNNNNRTG	2 cut(s)	521, 539
SsiI	CCGC	3 cut(s)	206, 1130, 1153
SspI	AATATT	1 cut(s)	150
SspMI	CTAG	2 cut(s)	1352, 1511
StyD4I	CCNGG	1 cut(s)	1066
StyI	CCWWGG	4 cut(s)	77, 444, 797, 933
TaaI	ACNGT	5 cut(s)	460, 982, 1028, 1460, 1562
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	2 cut(s)	1112, 1278
TatI	WGTACW	2 cut(s)	1187, 1212
TauI	GCSGC	3 cut(s)	208, 1133, 1156
TfiI	GAWTC	2 cut(s)	86, 758
Tru1I	TTAA	6 cut(s)	6, 1020, 1220, 1484, 1494, 1585
Tru9I	TTAA	6 cut(s)	6, 1020, 1220, 1484, 1494, 1585
TscAI	CASTG	4 cut(s)	181, 442, 1167, 1273
TseFI	GTSAC	3 cut(s)	142, 454, 704
TseI	GCWGC	7 cut(s)	179, 208, 211, 239, 623, 1127, 1133
Tsp45I	GTSAC	3 cut(s)	142, 454, 704
TspDTI	ATGAA	7 cut(s)	384, 418, 517, 715, 786, 1249, 1325
TspGWI	ACGGA	2 cut(s)	710, 909
TspRI	CASTG	4 cut(s)	181, 442, 1167, 1273
VpaK11BI	GGWCC	1 cut(s)	1193
VspI	ATTAAT	1 cut(s)	1494
XapI	RAATTY	3 cut(s)	282, 507, 603
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	2 cut(s)	1352, 1511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.